Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:44:56 (732511): wrapper (7.7.26015): starting
17:44:56 (732511): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 17:44:56] Arguments: --nthreads 9
[2025-11-25 17:44:56] Threads: 9
[2025-11-25 17:44:56] Checking for CVMFS
[2025-11-25 17:44:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:44:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:44:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:44:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:44:57] 2.13.2.0 6699 35014 238452 153300 2 148 29695360 40960000 23440 16776704 0 89426610 99.611 90919358 37797 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:44:57] CVMFS is ok
[2025-11-25 17:44:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:44:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:44:57] Further information can be found at the LHC@home message board.
[2025-11-25 17:44:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:44:57] Checking for apptainer binary...
[2025-11-25 17:44:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:44:57] Running /usr/bin/apptainer --version
[2025-11-25 17:44:57] apptainer version 1.4.4-1.el9
[2025-11-25 17:44:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:44:57] c-212-4.aglt2.org
[2025-11-25 17:44:57] apptainer works
[2025-11-25 17:44:57] Set ATHENA_PROC_NUMBER=9
[2025-11-25 17:44:57] Set ATHENA_CORE_NUMBER=9
[2025-11-25 17:44:57] Starting ATLAS job with PandaID=6896450827
[2025-11-25 17:44:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:04:50]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:04:50] 2025-11-26 12:03:34,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:04:50] 2025-11-26 12:03:34,545 | INFO     | time since job start (47897s) is within the limit (172800.0s)
[2025-11-26 07:04:50] 2025-11-26 12:03:36,551 | INFO     | time since job start (47899s) is within the limit (172800.0s)
[2025-11-26 07:04:50] 2025-11-26 12:03:36,831 | INFO     | monitor loop #2775: job 0:6896450827 is in state 'finished'
[2025-11-26 07:04:50] 2025-11-26 12:03:36,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:04:50] 2025-11-26 12:03:38,564 | INFO     | time since job start (47901s) is within the limit (172800.0s)
[2025-11-26 07:04:50] 2025-11-26 12:03:39,338 | INFO     | monitor loop #2776: job 0:6896450827 is in state 'finished'
[2025-11-26 07:04:50] 2025-11-26 12:03:39,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:04:50] 2025-11-26 12:03:40,571 | INFO     | time since job start (47903s) is within the limit (172800.0s)
[2025-11-26 07:04:50] 2025-11-26 12:03:41,848 | INFO     | monitor loop #2777: job 0:6896450827 is in state 'finished'
[2025-11-26 07:04:50] 2025-11-26 12:03:41,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:04:50] 2025-11-26 12:03:42,583 | INFO     | time since job start (47905s) is within the limit (172800.0s)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,241 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 07:04:50] 2025-11-26 12:03:44,260 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3063.045541666668
[2025-11-26 07:04:50] 2025-11-26 12:03:44,276 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896450827/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,277 | INFO     | extracted standard info from prmon json
[2025-11-26 07:04:50] 2025-11-26 12:03:44,277 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:04:50] 2025-11-26 12:03:44,277 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:04:50] 2025-11-26 12:03:44,306 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:04:50] 2025-11-26 12:03:44,307 | INFO     | sum of square deviations: 149428603493.4238
[2025-11-26 07:04:50] 2025-11-26 12:03:44,388 | INFO     | monitor loop #2778: job 0:6896450827 is in state 'finished'
[2025-11-26 07:04:50] 2025-11-26 12:03:44,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,405 | INFO     | sum of deviations: 589252925417.1216
[2025-11-26 07:04:50] 2025-11-26 12:03:44,406 | INFO     | mean x: 1764134653.3545918
[2025-11-26 07:04:50] 2025-11-26 12:03:44,406 | INFO     | mean y: 2901082.6326530613
[2025-11-26 07:04:50] 2025-11-26 12:03:44,406 | INFO     | intersect: -6953742297.660071
[2025-11-26 07:04:50] 2025-11-26 12:03:44,407 | INFO     | chi2: 22.15279828935191
[2025-11-26 07:04:50] 2025-11-26 12:03:44,407 | INFO     | sum of square deviations: 146588323916.1155
[2025-11-26 07:04:50] 2025-11-26 12:03:44,436 | INFO     | sum of deviations: 861793742572.1278
[2025-11-26 07:04:50] 2025-11-26 12:03:44,436 | INFO     | mean x: 1764134500.8664956
[2025-11-26 07:04:50] 2025-11-26 12:03:44,436 | INFO     | mean y: 2915708.433889602
[2025-11-26 07:04:50] 2025-11-26 12:03:44,437 | INFO     | intersect: -10368442891.534454
[2025-11-26 07:04:50] 2025-11-26 12:03:44,437 | INFO     | chi2: 18.39185374431277
[2025-11-26 07:04:50] 2025-11-26 12:03:44,437 | INFO     | current chi2=18.39185374431277 (change=16.977288809815498 %)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,437 | INFO     | right removable region: 778
[2025-11-26 07:04:50] 2025-11-26 12:03:44,438 | INFO     | sum of square deviations: 146587436976.1157
[2025-11-26 07:04:50] 2025-11-26 12:03:44,475 | INFO     | sum of deviations: 300304923781.5502
[2025-11-26 07:04:50] 2025-11-26 12:03:44,475 | INFO     | mean x: 1764134805.8664956
[2025-11-26 07:04:50] 2025-11-26 12:03:44,475 | INFO     | mean y: 2916588.1206675223
[2025-11-26 07:04:50] 2025-11-26 12:03:44,475 | INFO     | intersect: -3611160984.5872693
[2025-11-26 07:04:50] 2025-11-26 12:03:44,482 | INFO     | chi2: 18.877794911680404
[2025-11-26 07:04:50] 2025-11-26 12:03:44,482 | INFO     | current chi2=18.877794911680404 (change=14.783700618290233 %)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,483 | INFO     | left removable region: 10
[2025-11-26 07:04:50] 2025-11-26 12:03:44,483 | INFO     | sum of square deviations: 140465289614.59238
[2025-11-26 07:04:50] 2025-11-26 12:03:44,520 | INFO     | sum of deviations: 481203503033.2041
[2025-11-26 07:04:50] 2025-11-26 12:03:44,520 | INFO     | mean x: 1764134775.389323
[2025-11-26 07:04:50] 2025-11-26 12:03:44,520 | INFO     | mean y: 2941759.390625
[2025-11-26 07:04:50] 2025-11-26 12:03:44,520 | INFO     | intersect: -6040599930.298436
[2025-11-26 07:04:50] 2025-11-26 12:03:44,529 | INFO     | chi2: 13.686141499923831
[2025-11-26 07:04:50] 2025-11-26 12:03:44,529 | INFO     | current memory leak: 3.43 B/s (using 768 data points, chi2=13.69)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,530 | INFO     | could have reported an average CPU frequency of 3161 MHz (30 samples)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | ..............................
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . Timing measurements:
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . get job = 0 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . initial setup = 3 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . payload setup = 16 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . stage-in = 0 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . payload execution = 47829 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . stage-out = 9 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | . log creation = 4 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,531 | INFO     | ..............................
[2025-11-26 07:04:50] 2025-11-26 12:03:44,602 | INFO     | time since job start (47907s) is within the limit (172800.0s)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,957 | INFO     | 
[2025-11-26 07:04:50] 2025-11-26 12:03:44,957 | INFO     | job summary report
[2025-11-26 07:04:50] 2025-11-26 12:03:44,957 | INFO     | --------------------------------------------------
[2025-11-26 07:04:50] 2025-11-26 12:03:44,957 | INFO     | PanDA job id: 6896450827
[2025-11-26 07:04:50] 2025-11-26 12:03:44,957 | INFO     | task id: 47556149
[2025-11-26 07:04:50] 2025-11-26 12:03:44,957 | INFO     | errors: (none)
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | pilot state: finished 
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | transexitcode: 0
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | exeerrorcode: 0
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | exeerrordiag: 
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | exitcode: 0
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | exitmsg: OK
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | cpuconsumptiontime: 200981 s
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | nevents: 1000
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | neventsw: 0
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | pid: 744095
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | pgrp: 744095
[2025-11-26 07:04:50] 2025-11-26 12:03:44,958 | INFO     | corecount: 9
[2025-11-26 07:04:50] 2025-11-26 12:03:44,959 | INFO     | event service: False
[2025-11-26 07:04:50] 2025-11-26 12:03:44,959 | INFO     | sizes: {0: 2284314, 11: 2284604, 47851: 2331398, 47862: 2340392, 47863: 2340448, 47882: 2340694}
[2025-11-26 07:04:50] 2025-11-26 12:03:44,959 | INFO     | --------------------------------------------------
[2025-11-26 07:04:50] 2025-11-26 12:03:44,959 | INFO     | 
[2025-11-26 07:04:50] 2025-11-26 12:03:44,959 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 07:04:50] 2025-11-26 12:03:45,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:04:50] 2025-11-26 12:03:45,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:04:50] 2025-11-26 12:03:45,021 | INFO     | job 6896450827 has completed (purged errors)
[2025-11-26 07:04:50] 2025-11-26 12:03:45,021 | INFO     | overall cleanup function is called
[2025-11-26 07:04:50] 2025-11-26 12:03:46,054 | INFO     | --- collectZombieJob: --- 10, [744095]
[2025-11-26 07:04:50] 2025-11-26 12:03:46,054 | INFO     | zombie collector waiting for pid 744095
[2025-11-26 07:04:50] 2025-11-26 12:03:46,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:04:50] 2025-11-26 12:03:46,054 | INFO     | collected zombie processes
[2025-11-26 07:04:50] 2025-11-26 12:03:46,054 | INFO     | will attempt to kill all subprocesses of pid=744095
[2025-11-26 07:04:50] 2025-11-26 12:03:48,012 | INFO     | process IDs to be killed: [744095] (in reverse order)
[2025-11-26 07:04:50] 2025-11-26 12:03:48,199 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:04:50] 2025-11-26 12:03:48,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:04:50] 2025-11-26 12:03:48,235 | INFO     | did not find any defunct processes belonging to 744095
[2025-11-26 07:04:50] 2025-11-26 12:03:48,269 | INFO     | did not find any defunct processes belonging to 744095
[2025-11-26 07:04:50] 2025-11-26 12:03:48,276 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:04:50] 2025-11-26 12:03:48,276 | INFO     | ready for new job
[2025-11-26 07:04:50] 2025-11-26 12:03:48,276 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:04:50] 2025-11-26 12:03:48,307 | INFO     | ***************************************
[2025-11-26 07:04:50] 2025-11-26 12:03:48,307 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:04:50] 2025-11-26 12:03:48,308 | INFO     | ***************************************
[2025-11-26 07:04:50] 2025-11-26 12:03:48,308 | INFO     | 
[2025-11-26 07:04:50] 2025-11-26 12:03:48,375 | INFO     | architecture information:
[2025-11-26 07:04:50] 2025-11-26 12:03:48,395 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:04:50] 2025-11-26 12:03:48,482 | INFO     | cat /etc/os-release:
[2025-11-26 07:04:50] NAME="CentOS Linux"
[2025-11-26 07:04:50] VERSION="7 (Core)"
[2025-11-26 07:04:50] ID="centos"
[2025-11-26 07:04:50] ID_LIKE="rhel fedora"
[2025-11-26 07:04:50] VERSION_ID="7"
[2025-11-26 07:04:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:04:50] ANSI_COLOR="0;31"
[2025-11-26 07:04:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:04:50] HOME_URL="https://www.centos.org/"
[2025-11-26 07:04:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:04:50] 
[2025-11-26 07:04:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:04:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:04:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:04:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:04:50] 
[2025-11-26 07:04:50] 2025-11-26 12:03:48,482 | INFO     | ***************************************
[2025-11-26 07:04:50] 2025-11-26 12:03:48,987 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 07:04:50] 2025-11-26 12:03:49,109 | INFO     | sufficient remaining disk space (121282494464 B)
[2025-11-26 07:04:50] 2025-11-26 12:03:49,109 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:04:50] 2025-11-26 12:03:49,110 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:04:50] 2025-11-26 12:03:49,110 | INFO     | update_server=False
[2025-11-26 07:04:50] 2025-11-26 12:03:49,110 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:04:50] 2025-11-26 12:03:49,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:04:50] 2025-11-26 12:03:49,166 | INFO     | all job control threads have been joined
[2025-11-26 07:04:50] 2025-11-26 12:03:49,196 | INFO     | all payload control threads have been joined
[2025-11-26 07:04:50] 2025-11-26 12:03:49,415 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 07:04:50] 2025-11-26 12:03:49,415 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 07:04:50] 2025-11-26 12:03:49,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:04:50] 2025-11-26 12:03:49,415 | INFO     | will abort loop
[2025-11-26 07:04:50] 2025-11-26 12:03:49,653 | INFO     | all data control threads have been joined
[2025-11-26 07:04:50] 2025-11-26 12:03:49,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:04:50] 2025-11-26 12:03:50,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:04:50] 2025-11-26 12:03:50,116 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,172 | INFO     | [job] control thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,202 | INFO     | [payload] control thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,355 | INFO     | [job] validate thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,356 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,434 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,645 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,682 | INFO     | [data] control thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,744 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,981 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:50,998 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:51,124 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:51,186 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:51,527 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:03:54,033 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:04:50] 2025-11-26 12:04:22,223 | INFO     | PID=736764 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 07:04:50] 2025-11-26 12:04:22,224 | INFO     | .. there are 27 such processes running
[2025-11-26 07:04:50] 2025-11-26 12:04:22,224 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:04:50] 2025-11-26 12:04:22,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:04:50] 2025-11-26 12:04:22,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:04:50] 2025-11-26 12:04:43,027 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:04:50] 2025-11-26 12:04:44,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572433008448)>', '<ExcThread(monitor, started 140571712673536)>']
[2025-11-26 07:04:50] 2025-11-26 12:04:44,366 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:04:50] 2025-11-26 12:04:44,366 | INFO     | [monitor] control thread has ended
[2025-11-26 07:04:50] 2025-11-26 12:04:49,360 | INFO     | all workflow threads have been joined
[2025-11-26 07:04:50] 2025-11-26 12:04:49,371 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:04:50] 2025-11-26 12:04:49,371 | INFO     | traces error code: 0
[2025-11-26 07:04:50] 2025-11-26 12:04:49,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:04:50] 2025-11-26 12:04:49,731 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:04:50] 2025-11-26 12:04:49,738 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:04:50] 2025-11-26 12:04:49,745 [wrapper] pilotpid: 736764
[2025-11-26 07:04:50] 2025-11-26 12:04:49,748 [wrapper] Pilot exit status: 0
[2025-11-26 07:04:50] 2025-11-26 12:04:49,773 [wrapper] pandaids: 6896450827
[2025-11-26 07:04:50] 2025-11-26 12:04:49,882 [wrapper] cleanup supervisor_pilot 3735164 736765
[2025-11-26 07:04:50] 2025-11-26 12:04:49,897 [wrapper] Test setup, not cleaning
[2025-11-26 07:04:50] 2025-11-26 12:04:49,911 [wrapper] apfmon messages muted
[2025-11-26 07:04:50] 2025-11-26 12:04:49,925 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:04:50] 2025-11-26 12:04:49,948 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:04:50]  *** Error codes and diagnostics ***
[2025-11-26 07:04:50]     "exeErrorCode": 0,
[2025-11-26 07:04:50]     "exeErrorDiag": "",
[2025-11-26 07:04:50]     "pilotErrorCode": 0,
[2025-11-26 07:04:50]     "pilotErrorDiag": "",
[2025-11-26 07:04:50]  *** Listing of results directory ***
[2025-11-26 07:04:50] total 1314860
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 22:50 queuedata.json
[2025-11-26 07:04:50] -rwx------. 1 boincer umatlas     36292 Nov 24 22:55 runpilot2-wrapper.sh
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas       100 Nov 25 17:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:04:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 17:44 run_atlas
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas       105 Nov 25 17:44 job.xml
[2025-11-26 07:04:50] -rw-r--r--. 2 boincer umatlas 410191890 Nov 25 17:44 EVNT.47483658._001499.pool.root.1
[2025-11-26 07:04:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:44 start_atlas.sh
[2025-11-26 07:04:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 17:44 shared
[2025-11-26 07:04:50] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 17:44 input.tar.gz
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas         0 Nov 25 17:44 boinc_lockfile
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 17:44 pandaJob.out
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas        57 Nov 25 17:44 setup.sh.local
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas    991877 Nov 25 17:45 agis_schedconf.cvmfs.json
[2025-11-26 07:04:50] drwx------. 5 boincer umatlas      4096 Nov 25 17:45 pilot3
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas       533 Nov 26 06:35 boinc_task_state.xml
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas 916249875 Nov 26 07:00 HITS.47556149._004853.pool.root.1
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 07:02 init_data.xml
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas      1068 Nov 26 07:03 memory_monitor_summary.json
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas   1516240 Nov 26 07:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas   2089261 Nov 26 07:03 log.47556149._004853.job.log.tgz.1
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas        95 Nov 26 07:03 pilot_heartbeat.json
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas      8629 Nov 26 07:03 heartbeat.json
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 07:04 boinc_mmap_file
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas        29 Nov 26 07:04 wrapper_checkpoint.txt
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas      5010 Nov 26 07:04 pilotlog.txt
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas   5937774 Nov 26 07:04 log.47556149._004853.job.log.1
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas       353 Nov 26 07:04 output.list
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas       620 Nov 26 07:04 runtime_log
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas   8048640 Nov 26 07:04 result.tar.gz
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 07:04 runtime_log.err
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas       663 Nov 26 07:04 HCIMDmTKzh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEJJKDmRWCJyn.diag
[2025-11-26 07:04:50] -rw-r--r--. 1 boincer umatlas     21721 Nov 26 07:04 stderr.txt
[2025-11-26 07:04:50] HITS file was successfully produced:
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas 916249875 Nov 26 07:00 shared/HITS.pool.root.1
[2025-11-26 07:04:50]  *** Contents of shared directory: ***
[2025-11-26 07:04:50] total 1303816
[2025-11-26 07:04:50] -rw-r--r--. 2 boincer umatlas 410191890 Nov 25 17:44 ATLAS.root_0
[2025-11-26 07:04:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:44 start_atlas.sh
[2025-11-26 07:04:50] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 17:44 input.tar.gz
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas 916249875 Nov 26 07:00 HITS.pool.root.1
[2025-11-26 07:04:50] -rw-------. 1 boincer umatlas   8048640 Nov 26 07:04 result.tar.gz
07:04:52 (732511): run_atlas exited; CPU time 200939.285225
07:04:52 (732511): called boinc_finish(0)

</stderr_txt>
]]>

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