Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:44:07 (1485930): wrapper (7.7.26015): starting
20:44:07 (1485930): wrapper: running run_atlas (--nthreads 6)
[2025-11-26 20:44:07] Arguments: --nthreads 6
[2025-11-26 20:44:07] Threads: 6
[2025-11-26 20:44:07] Checking for CVMFS
[2025-11-26 20:44:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:44:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:44:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:44:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:44:08] 2.13.3.0 995944 2059 80420 153320 0 81 47519305 52428800 916 130560 0 1725046 99.989 82107 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-11-26 20:44:08] CVMFS is ok
[2025-11-26 20:44:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:44:08] Checking for apptainer binary...
[2025-11-26 20:44:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:44:08] Running /usr/bin/apptainer --version
[2025-11-26 20:44:08] apptainer version 1.4.4-1.el9
[2025-11-26 20:44:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:44:08] testio002
[2025-11-26 20:44:08] apptainer works
[2025-11-26 20:44:08] Set ATHENA_PROC_NUMBER=6
[2025-11-26 20:44:08] Set ATHENA_CORE_NUMBER=6
[2025-11-26 20:44:08] Starting ATLAS job with PandaID=6892549352
[2025-11-26 20:44:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:09:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:09:55] 2025-11-26 17:09:20,029 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:09:55] 2025-11-26 17:09:20,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:09:55] 2025-11-26 17:09:20,032 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:09:55] 2025-11-26 17:09:20,033 | INFO     | sum of square deviations: 9971385099.5
[2025-11-27 02:09:55] 2025-11-26 17:09:20,034 | INFO     | sum of deviations: 238855187013.5
[2025-11-27 02:09:55] 2025-11-26 17:09:20,034 | INFO     | mean x: 1764167142.5
[2025-11-27 02:09:55] 2025-11-26 17:09:20,034 | INFO     | mean y: 2609845.7012578617
[2025-11-27 02:09:55] 2025-11-26 17:09:20,035 | INFO     | intersect: -42256361053.54111
[2025-11-27 02:09:55] 2025-11-26 17:09:20,035 | INFO     | chi2: 7.275937371559154
[2025-11-27 02:09:55] 2025-11-26 17:09:20,035 | INFO     | sum of square deviations: 9508390372.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,036 | INFO     | sum of deviations: 327985153982.9999
[2025-11-27 02:09:55] 2025-11-26 17:09:20,036 | INFO     | mean x: 1764166990.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,036 | INFO     | mean y: 2639214.9009584663
[2025-11-27 02:09:55] 2025-11-26 17:09:20,037 | INFO     | intersect: -60851044661.055435
[2025-11-27 02:09:55] 2025-11-26 17:09:20,037 | INFO     | chi2: 4.54304089463602
[2025-11-27 02:09:55] 2025-11-26 17:09:20,037 | INFO     | current chi2=4.54304089463602 (change=37.56074767226184 %)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,037 | INFO     | sum of square deviations: 9059954057.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,038 | INFO     | sum of deviations: 331605937418.5001
[2025-11-27 02:09:55] 2025-11-26 17:09:20,038 | INFO     | mean x: 1764166837.5
[2025-11-27 02:09:55] 2025-11-26 17:09:20,038 | INFO     | mean y: 2640399.275974026
[2025-11-27 02:09:55] 2025-11-26 17:09:20,039 | INFO     | intersect: -64568128307.85924
[2025-11-27 02:09:55] 2025-11-26 17:09:20,039 | INFO     | chi2: 4.375309296698313
[2025-11-27 02:09:55] 2025-11-26 17:09:20,039 | INFO     | current chi2=4.375309296698313 (change=3.6920556479196196 %)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,039 | INFO     | right removable region: 307
[2025-11-27 02:09:55] 2025-11-26 17:09:20,039 | INFO     | sum of square deviations: 9508390372.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,040 | INFO     | sum of deviations: 145870230189.00003
[2025-11-27 02:09:55] 2025-11-26 17:09:20,041 | INFO     | mean x: 1764167295.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,041 | INFO     | mean y: 2640435.4536741213
[2025-11-27 02:09:55] 2025-11-26 17:09:20,041 | INFO     | intersect: -27061823616.35477
[2025-11-27 02:09:55] 2025-11-26 17:09:20,041 | INFO     | chi2: 4.536386941008407
[2025-11-27 02:09:55] 2025-11-26 17:09:20,041 | INFO     | current chi2=4.536386941008407 (change=37.652199168994386 %)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,041 | INFO     | sum of square deviations: 9059954057.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,042 | INFO     | sum of deviations: 74411917225.50002
[2025-11-27 02:09:55] 2025-11-26 17:09:20,043 | INFO     | mean x: 1764167447.5
[2025-11-27 02:09:55] 2025-11-26 17:09:20,043 | INFO     | mean y: 2664709.1136363638
[2025-11-27 02:09:55] 2025-11-26 17:09:20,043 | INFO     | intersect: -14486932175.085182
[2025-11-27 02:09:55] 2025-11-26 17:09:20,043 | INFO     | chi2: 3.039931665653976
[2025-11-27 02:09:55] 2025-11-26 17:09:20,043 | INFO     | current chi2=3.039931665653976 (change=32.98782257365768 %)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,043 | INFO     | sum of square deviations: 8625843592.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,044 | INFO     | sum of deviations: 61864410625.99999
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | mean x: 1764167600.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | mean y: 2669117.920792079
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | intersect: -12649912354.887915
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | chi2: 3.0210377990782846
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | current chi2=3.0210377990782846 (change=0.6215227397760228 %)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | left removable region: 30
[2025-11-27 02:09:55] 2025-11-26 17:09:20,045 | INFO     | sum of square deviations: 6590404498.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,046 | INFO     | sum of deviations: 119747772701.00002
[2025-11-27 02:09:55] 2025-11-26 17:09:20,046 | INFO     | mean x: 1764167722.0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,046 | INFO     | mean y: 2717055.0433213
[2025-11-27 02:09:55] 2025-11-26 17:09:20,046 | INFO     | intersect: -32052243371.832893
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | chi2: 0.0518688886580324
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | current memory leak: 18.17 B/s (using 277 data points, chi2=0.05)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | could have reported an average CPU frequency of 4333 MHz (14 samples)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | ..............................
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | . Timing measurements:
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | . get job = 0 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | . initial setup = 5 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | . payload setup = 2 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | . stage-in = 0 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,047 | INFO     | . payload execution = 19358 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,048 | INFO     | . stage-out = 8 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,048 | INFO     | . log creation = 0 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,048 | INFO     | ..............................
[2025-11-27 02:09:55] 2025-11-26 17:09:20,371 | INFO     | time since job start (19503s) is within the limit (172800.0s)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | 
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | job summary report
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | --------------------------------------------------
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | PanDA job id: 6892549352
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | task id: 47493029
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | errors: (none)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | pilot state: finished 
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | transexitcode: 0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | exeerrorcode: 0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | exeerrordiag: 
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | exitcode: 0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,400 | INFO     | exitmsg: OK
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | cpuconsumptiontime: 110566 s
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | nevents: 1000
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | neventsw: 0
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | pid: 1496450
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | pgrp: 1496450
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | corecount: 6
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | event service: False
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | sizes: {0: 2284303, 2: 2284565, 11: 2284593, 19364: 2318576, 19373: 2327626, 19490: 2327816}
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | --------------------------------------------------
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | 
[2025-11-27 02:09:55] 2025-11-26 17:09:20,401 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | job 6892549352 has completed (purged errors)
[2025-11-27 02:09:55] 2025-11-26 17:09:20,411 | INFO     | overall cleanup function is called
[2025-11-27 02:09:55] 2025-11-26 17:09:21,420 | INFO     | --- collectZombieJob: --- 10, [1496450]
[2025-11-27 02:09:55] 2025-11-26 17:09:21,420 | INFO     | zombie collector waiting for pid 1496450
[2025-11-27 02:09:55] 2025-11-26 17:09:21,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:09:55] 2025-11-26 17:09:21,420 | INFO     | collected zombie processes
[2025-11-27 02:09:55] 2025-11-26 17:09:21,420 | INFO     | will attempt to kill all subprocesses of pid=1496450
[2025-11-27 02:09:55] 2025-11-26 17:09:21,462 | INFO     | process IDs to be killed: [1496450] (in reverse order)
[2025-11-27 02:09:55] 2025-11-26 17:09:21,481 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:09:55] 2025-11-26 17:09:21,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:09:55] 2025-11-26 17:09:21,483 | INFO     | did not find any defunct processes belonging to 1496450
[2025-11-27 02:09:55] 2025-11-26 17:09:21,484 | INFO     | did not find any defunct processes belonging to 1496450
[2025-11-27 02:09:55] 2025-11-26 17:09:21,485 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:09:55] 2025-11-26 17:09:21,485 | INFO     | ready for new job
[2025-11-27 02:09:55] 2025-11-26 17:09:21,485 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:09:55] 2025-11-26 17:09:21,486 | INFO     | ***************************************
[2025-11-27 02:09:55] 2025-11-26 17:09:21,486 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:09:55] 2025-11-26 17:09:21,486 | INFO     | ***************************************
[2025-11-27 02:09:55] 2025-11-26 17:09:21,486 | INFO     | 
[2025-11-27 02:09:55] 2025-11-26 17:09:21,487 | INFO     | architecture information:
[2025-11-27 02:09:55] 2025-11-26 17:09:21,487 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:09:55] 2025-11-26 17:09:21,493 | INFO     | cat /etc/os-release:
[2025-11-27 02:09:55] NAME="CentOS Linux"
[2025-11-27 02:09:55] VERSION="7 (Core)"
[2025-11-27 02:09:55] ID="centos"
[2025-11-27 02:09:55] ID_LIKE="rhel fedora"
[2025-11-27 02:09:55] VERSION_ID="7"
[2025-11-27 02:09:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:09:55] ANSI_COLOR="0;31"
[2025-11-27 02:09:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:09:55] HOME_URL="https://www.centos.org/"
[2025-11-27 02:09:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:09:55] 
[2025-11-27 02:09:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:09:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:09:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:09:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:09:55] 
[2025-11-27 02:09:55] 2025-11-26 17:09:21,494 | INFO     | ***************************************
[2025-11-27 02:09:55] 2025-11-26 17:09:21,996 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | INFO     | sufficient remaining disk space (291290218496 B)
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | INFO     | update_server=False
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:09:55] 2025-11-26 17:09:22,003 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 02:09:55] 2025-11-26 17:09:22,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:09:55] 2025-11-26 17:09:22,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:09:55] 2025-11-26 17:09:22,004 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:09:55] 2025-11-26 17:09:22,004 | INFO     | aborting loop
[2025-11-27 02:09:55] 2025-11-26 17:09:22,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:09:55] 2025-11-26 17:09:22,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:09:55] 2025-11-26 17:09:22,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:09:55] 2025-11-26 17:09:22,417 | INFO     | all payload control threads have been joined
[2025-11-27 02:09:55] 2025-11-26 17:09:22,451 | INFO     | all data control threads have been joined
[2025-11-27 02:09:55] 2025-11-26 17:09:22,813 | INFO     | all job control threads have been joined
[2025-11-27 02:09:55] 2025-11-26 17:09:23,008 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,009 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,009 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,042 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,242 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,423 | INFO     | [payload] control thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,456 | INFO     | [data] control thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,514 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,813 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:23,818 | INFO     | [job] control thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:24,009 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:24,163 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:24,234 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:24,392 | INFO     | [job] validate thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:24,475 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:26,254 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:09:55] 2025-11-26 17:09:48,580 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:09:55] 2025-11-26 17:09:50,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140117148501824)>', '<ExcThread(monitor, started 140116876039936)>']
[2025-11-27 02:09:55] 2025-11-26 17:09:51,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:09:55] 2025-11-26 17:09:51,132 | INFO     | [monitor] control thread has ended
[2025-11-27 02:09:55] 2025-11-26 17:09:55,519 | INFO     | all workflow threads have been joined
[2025-11-27 02:09:55] 2025-11-26 17:09:55,519 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:09:55] 2025-11-26 17:09:55,519 | INFO     | traces error code: 0
[2025-11-27 02:09:55] 2025-11-26 17:09:55,519 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:09:55] 2025-11-26 17:09:55,577 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:09:55] 2025-11-26 17:09:55,578 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:09:55] 2025-11-26 17:09:55,579 [wrapper] pilotpid: 1489715
[2025-11-27 02:09:55] 2025-11-26 17:09:55,580 [wrapper] Pilot exit status: 0
[2025-11-27 02:09:55] 2025-11-26 17:09:55,584 [wrapper] pandaids: 6892549352
[2025-11-27 02:09:55] 2025-11-26 17:09:55,595 [wrapper] cleanup supervisor_pilot 1574743 1489716
[2025-11-27 02:09:55] 2025-11-26 17:09:55,596 [wrapper] Test setup, not cleaning
[2025-11-27 02:09:55] 2025-11-26 17:09:55,597 [wrapper] apfmon messages muted
[2025-11-27 02:09:55] 2025-11-26 17:09:55,598 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:09:55] 2025-11-26 17:09:55,599 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:09:55]  *** Error codes and diagnostics ***
[2025-11-27 02:09:55]     "exeErrorCode": 0,
[2025-11-27 02:09:55]     "exeErrorDiag": "",
[2025-11-27 02:09:55]     "pilotErrorCode": 0,
[2025-11-27 02:09:55]     "pilotErrorDiag": "",
[2025-11-27 02:09:55]  *** Listing of results directory ***
[2025-11-27 02:09:55] total 1304580
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc    576529 Nov 19 17:32 pilot3.tar.gz
[2025-11-27 02:09:55] -rwx------. 1 boinc boinc     36292 Nov 19 17:52 runpilot2-wrapper.sh
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc      5112 Nov 19 17:52 queuedata.json
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc       100 Nov 26 20:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:09:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 26 20:44 run_atlas
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc       105 Nov 26 20:44 job.xml
[2025-11-27 02:09:55] -rw-r--r--. 2 boinc boinc     15120 Nov 26 20:44 start_atlas.sh
[2025-11-27 02:09:55] drwxrwx--x. 2 boinc boinc        68 Nov 26 20:44 shared
[2025-11-27 02:09:55] -rw-r--r--. 2 boinc boinc    590090 Nov 26 20:44 input.tar.gz
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc      9648 Nov 26 20:44 init_data.xml
[2025-11-27 02:09:55] -rw-r--r--. 2 boinc boinc 413421491 Nov 26 20:44 EVNT.47493027._000359.pool.root.1
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc         0 Nov 26 20:44 boinc_lockfile
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc      2772 Nov 26 20:44 pandaJob.out
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc    991830 Nov 26 20:44 agis_schedconf.cvmfs.json
[2025-11-27 02:09:55] drwx------. 5 boinc boinc      4096 Nov 26 20:44 pilot3
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc       532 Nov 27 02:00 boinc_task_state.xml
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc 910221355 Nov 27 02:06 HITS.47493029._003549.pool.root.1
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc      1043 Nov 27 02:07 memory_monitor_summary.json
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc   1516240 Nov 27 02:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc   1398121 Nov 27 02:07 log.47493029._003549.job.log.tgz.1
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc        95 Nov 27 02:09 pilot_heartbeat.json
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc      8610 Nov 27 02:09 heartbeat.json
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc      8192 Nov 27 02:09 boinc_mmap_file
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc        29 Nov 27 02:09 wrapper_checkpoint.txt
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc      4553 Nov 27 02:09 pilotlog.txt
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc   2772527 Nov 27 02:09 log.47493029._003549.job.log.1
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc       353 Nov 27 02:09 output.list
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc       620 Nov 27 02:09 runtime_log
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc   4188160 Nov 27 02:09 result.tar.gz
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc      8662 Nov 27 02:09 runtime_log.err
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc       650 Nov 27 02:09 M1pKDmO6sf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm56GKDmJW2Plm.diag
[2025-11-27 02:09:55] -rw-r--r--. 1 boinc boinc     20640 Nov 27 02:09 stderr.txt
[2025-11-27 02:09:55] HITS file was successfully produced:
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc 910221355 Nov 27 02:06 shared/HITS.pool.root.1
[2025-11-27 02:09:55]  *** Contents of shared directory: ***
[2025-11-27 02:09:55] total 1297312
[2025-11-27 02:09:55] -rw-r--r--. 2 boinc boinc     15120 Nov 26 20:44 start_atlas.sh
[2025-11-27 02:09:55] -rw-r--r--. 2 boinc boinc    590090 Nov 26 20:44 input.tar.gz
[2025-11-27 02:09:55] -rw-r--r--. 2 boinc boinc 413421491 Nov 26 20:44 ATLAS.root_0
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc 910221355 Nov 27 02:06 HITS.pool.root.1
[2025-11-27 02:09:55] -rw-------. 1 boinc boinc   4188160 Nov 27 02:09 result.tar.gz
02:09:56 (1485930): run_atlas exited; CPU time 110574.246617
02:09:56 (1485930): called boinc_finish(0)

</stderr_txt>
]]>

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