Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:46:30 (2839815): wrapper (7.7.26015): starting
18:46:30 (2839815): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:46:30] Arguments: --nthreads 8
[2025-11-25 18:46:30] Threads: 8
[2025-11-25 18:46:30] Checking for CVMFS
[2025-11-25 18:46:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:46:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:46:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:46:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:46:30] 2.13.3.0 15733 27850 348740 153302 0 71 30039973 32935936 26337 16776704 0 145674636 99.716 105719462 26928 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:46:30] CVMFS is ok
[2025-11-25 18:46:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:46:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:46:30] Further information can be found at the LHC@home message board.
[2025-11-25 18:46:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:46:30] Checking for apptainer binary...
[2025-11-25 18:46:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:46:30] Running /usr/bin/apptainer --version
[2025-11-25 18:46:30] apptainer version 1.4.4-1.el9
[2025-11-25 18:46:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:46:31] c-8-39.aglt2.org
[2025-11-25 18:46:31] apptainer works
[2025-11-25 18:46:31] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:46:31] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:46:31] Starting ATLAS job with PandaID=6896450399
[2025-11-25 18:46:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:05:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:05:43] 2025-11-26 23:05:04,688 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2729.0850416666667
[2025-11-26 18:05:43] 2025-11-26 23:05:04,737 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896450399/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:05:43] 2025-11-26 23:05:04,741 | INFO     | extracted standard info from prmon json
[2025-11-26 18:05:43] 2025-11-26 23:05:04,741 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:05:43] 2025-11-26 23:05:04,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:05:43] 2025-11-26 23:05:04,777 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:05:43] 2025-11-26 23:05:04,779 | INFO     | sum of square deviations: 804324267214.8009
[2025-11-26 18:05:43] 2025-11-26 23:05:04,824 | INFO     | sum of deviations: 4243712835276.617
[2025-11-26 18:05:43] 2025-11-26 23:05:04,825 | INFO     | mean x: 1764156390.2161572
[2025-11-26 18:05:43] 2025-11-26 23:05:04,825 | INFO     | mean y: 3014979.674672489
[2025-11-26 18:05:43] 2025-11-26 23:05:04,825 | INFO     | intersect: -9304889085.584898
[2025-11-26 18:05:43] 2025-11-26 23:05:04,827 | INFO     | chi2: 10.60952525624669
[2025-11-26 18:05:43] 2025-11-26 23:05:04,829 | INFO     | sum of square deviations: 795575500964.7341
[2025-11-26 18:05:43] 2025-11-26 23:05:04,874 | INFO     | sum of deviations: 4731996757064.277
[2025-11-26 18:05:43] 2025-11-26 23:05:04,874 | INFO     | mean x: 1764156237.718773
[2025-11-26 18:05:43] 2025-11-26 23:05:04,874 | INFO     | mean y: 3023490.164353543
[2025-11-26 18:05:43] 2025-11-26 23:05:04,875 | INFO     | intersect: -10489986394.77678
[2025-11-26 18:05:43] 2025-11-26 23:05:04,876 | INFO     | chi2: 7.406504329422234
[2025-11-26 18:05:43] 2025-11-26 23:05:04,876 | INFO     | current chi2=7.406504329422234 (change=30.190049502342966 %)
[2025-11-26 18:05:43] 2025-11-26 23:05:04,878 | INFO     | sum of square deviations: 786890410327.1351
[2025-11-26 18:05:43] 2025-11-26 23:05:04,924 | INFO     | sum of deviations: 5027696885642.791
[2025-11-26 18:05:43] 2025-11-26 23:05:04,925 | INFO     | mean x: 1764156085.2214077
[2025-11-26 18:05:43] 2025-11-26 23:05:04,925 | INFO     | mean y: 3028678.917888563
[2025-11-26 18:05:43] 2025-11-26 23:05:04,925 | INFO     | intersect: -11268734121.912355
[2025-11-26 18:05:43] 2025-11-26 23:05:04,927 | INFO     | chi2: 5.962411910185102
[2025-11-26 18:05:43] 2025-11-26 23:05:04,927 | INFO     | current chi2=5.962411910185102 (change=19.497624722914097 %)
[2025-11-26 18:05:43] 2025-11-26 23:05:04,927 | INFO     | right removable region: 1363
[2025-11-26 18:05:43] 2025-11-26 23:05:04,929 | INFO     | sum of square deviations: 795574900724.7339
[2025-11-26 18:05:43] 2025-11-26 23:05:04,982 | INFO     | sum of deviations: 3699576083593.725
[2025-11-26 18:05:43] 2025-11-26 23:05:04,982 | INFO     | mean x: 1764156542.718773
[2025-11-26 18:05:43] 2025-11-26 23:05:04,982 | INFO     | mean y: 3024462.6486486485
[2025-11-26 18:05:43] 2025-11-26 23:05:04,982 | INFO     | intersect: -8200642278.486961
[2025-11-26 18:05:43] 2025-11-26 23:05:04,984 | INFO     | chi2: 6.958734598595559
[2025-11-26 18:05:43] 2025-11-26 23:05:04,984 | INFO     | current chi2=6.958734598595559 (change=34.41049971111209 %)
[2025-11-26 18:05:43] 2025-11-26 23:05:04,986 | INFO     | sum of square deviations: 786889209847.1345
[2025-11-26 18:05:43] 2025-11-26 23:05:05,043 | INFO     | sum of deviations: 3382529956462.0786
[2025-11-26 18:05:43] 2025-11-26 23:05:05,043 | INFO     | mean x: 1764156695.2214077
[2025-11-26 18:05:43] 2025-11-26 23:05:05,043 | INFO     | mean y: 3030026.1686217007
[2025-11-26 18:05:43] 2025-11-26 23:05:05,043 | INFO     | intersect: -7580391877.200463
[2025-11-26 18:05:43] 2025-11-26 23:05:05,045 | INFO     | chi2: 5.748798718032875
[2025-11-26 18:05:43] 2025-11-26 23:05:05,045 | INFO     | current chi2=5.748798718032875 (change=17.387297409027187 %)
[2025-11-26 18:05:43] 2025-11-26 23:05:05,046 | INFO     | left removable region: 20
[2025-11-26 18:05:43] 2025-11-26 23:05:05,047 | INFO     | sum of square deviations: 751101378048.7089
[2025-11-26 18:05:43] 2025-11-26 23:05:05,088 | INFO     | sum of deviations: 4020557544767.32
[2025-11-26 18:05:43] 2025-11-26 23:05:05,088 | INFO     | mean x: 1764156664.7267313
[2025-11-26 18:05:43] 2025-11-26 23:05:05,088 | INFO     | mean y: 3048163.6820551003
[2025-11-26 18:05:43] 2025-11-26 23:05:05,088 | INFO     | intersect: -9440275461.878698
[2025-11-26 18:05:43] 2025-11-26 23:05:05,089 | INFO     | chi2: 0.8249146130441409
[2025-11-26 18:05:43] 2025-11-26 23:05:05,089 | INFO     | current memory leak: 5.35 B/s (using 1343 data points, chi2=0.82)
[2025-11-26 18:05:43] 2025-11-26 23:05:05,090 | INFO     | could have reported an average CPU frequency of 2717 MHz (49 samples)
[2025-11-26 18:05:43] 2025-11-26 23:05:05,090 | INFO     | ..............................
[2025-11-26 18:05:43] 2025-11-26 23:05:05,090 | INFO     | . Timing measurements:
[2025-11-26 18:05:43] 2025-11-26 23:05:05,090 | INFO     | . get job = 0 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,090 | INFO     | . initial setup = 4 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,091 | INFO     | . payload setup = 22 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,091 | INFO     | . stage-in = 0 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,091 | INFO     | . payload execution = 83794 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,091 | INFO     | . stage-out = 5 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,091 | INFO     | . log creation = 1 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,091 | INFO     | ..............................
[2025-11-26 18:05:43] 2025-11-26 23:05:05,421 | INFO     | 
[2025-11-26 18:05:43] 2025-11-26 23:05:05,421 | INFO     | job summary report
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | --------------------------------------------------
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | PanDA job id: 6896450399
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | task id: 47556149
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | errors: (none)
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | pilot state: finished 
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | transexitcode: 0
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | exeerrorcode: 0
[2025-11-26 18:05:43] 2025-11-26 23:05:05,422 | INFO     | exeerrordiag: 
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | exitcode: 0
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | exitmsg: OK
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | cpuconsumptiontime: 340323 s
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | nevents: 1000
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | neventsw: 0
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | pid: 2872198
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | pgrp: 2872198
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | corecount: 8
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | event service: False
[2025-11-26 18:05:43] 2025-11-26 23:05:05,423 | INFO     | sizes: {0: 2284315, 1: 2284343, 12: 2284343, 16: 2284633, 23: 2284661, 83821: 2349349, 83827: 2358343, 83829: 2358399, 83839: 2358645}
[2025-11-26 18:05:43] 2025-11-26 23:05:05,424 | INFO     | --------------------------------------------------
[2025-11-26 18:05:43] 2025-11-26 23:05:05,424 | INFO     | 
[2025-11-26 18:05:43] 2025-11-26 23:05:05,424 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 18:05:43] 2025-11-26 23:05:05,447 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,448 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,450 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,450 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,450 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:05:43] 2025-11-26 23:05:05,450 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,450 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:05:43] 2025-11-26 23:05:05,450 | INFO     | job 6896450399 has completed (purged errors)
[2025-11-26 18:05:43] 2025-11-26 23:05:05,451 | INFO     | overall cleanup function is called
[2025-11-26 18:05:43] 2025-11-26 23:05:06,468 | INFO     | --- collectZombieJob: --- 10, [2872198]
[2025-11-26 18:05:43] 2025-11-26 23:05:06,468 | INFO     | zombie collector waiting for pid 2872198
[2025-11-26 18:05:43] 2025-11-26 23:05:06,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:05:43] 2025-11-26 23:05:06,472 | INFO     | collected zombie processes
[2025-11-26 18:05:43] 2025-11-26 23:05:06,472 | INFO     | will attempt to kill all subprocesses of pid=2872198
[2025-11-26 18:05:43] 2025-11-26 23:05:06,887 | INFO     | PID=2850702 has CPU usage=22.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 18:05:43] 2025-11-26 23:05:06,887 | INFO     | .. there are 45 such processes running
[2025-11-26 18:05:43] 2025-11-26 23:05:07,247 | INFO     | process IDs to be killed: [2872198] (in reverse order)
[2025-11-26 18:05:43] 2025-11-26 23:05:07,431 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:05:43] 2025-11-26 23:05:07,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:05:43] 2025-11-26 23:05:07,505 | INFO     | did not find any defunct processes belonging to 2872198
[2025-11-26 18:05:43] 2025-11-26 23:05:07,544 | INFO     | did not find any defunct processes belonging to 2872198
[2025-11-26 18:05:43] 2025-11-26 23:05:07,546 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:05:43] 2025-11-26 23:05:07,546 | INFO     | ready for new job
[2025-11-26 18:05:43] 2025-11-26 23:05:07,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:05:43] 2025-11-26 23:05:07,552 | INFO     | ***************************************
[2025-11-26 18:05:43] 2025-11-26 23:05:07,553 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:05:43] 2025-11-26 23:05:07,553 | INFO     | ***************************************
[2025-11-26 18:05:43] 2025-11-26 23:05:07,553 | INFO     | 
[2025-11-26 18:05:43] 2025-11-26 23:05:07,556 | INFO     | architecture information:
[2025-11-26 18:05:43] 2025-11-26 23:05:07,556 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:05:43] 2025-11-26 23:05:07,572 | INFO     | cat /etc/os-release:
[2025-11-26 18:05:43] NAME="CentOS Linux"
[2025-11-26 18:05:43] VERSION="7 (Core)"
[2025-11-26 18:05:43] ID="centos"
[2025-11-26 18:05:43] ID_LIKE="rhel fedora"
[2025-11-26 18:05:43] VERSION_ID="7"
[2025-11-26 18:05:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:05:43] ANSI_COLOR="0;31"
[2025-11-26 18:05:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:05:43] HOME_URL="https://www.centos.org/"
[2025-11-26 18:05:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:05:43] 
[2025-11-26 18:05:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:05:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:05:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:05:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:05:43] 
[2025-11-26 18:05:43] 2025-11-26 23:05:07,572 | INFO     | ***************************************
[2025-11-26 18:05:43] 2025-11-26 23:05:08,074 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 18:05:43] 2025-11-26 23:05:08,089 | INFO     | sufficient remaining disk space (69700943872 B)
[2025-11-26 18:05:43] 2025-11-26 23:05:08,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:05:43] 2025-11-26 23:05:08,090 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:05:43] 2025-11-26 23:05:08,090 | INFO     | update_server=False
[2025-11-26 18:05:43] 2025-11-26 23:05:08,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:05:43] 2025-11-26 23:05:08,436 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 18:05:43] 2025-11-26 23:05:08,437 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 18:05:43] 2025-11-26 23:05:08,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:05:43] 2025-11-26 23:05:08,437 | INFO     | will abort loop
[2025-11-26 18:05:43] 2025-11-26 23:05:08,643 | INFO     | all payload control threads have been joined
[2025-11-26 18:05:43] 2025-11-26 23:05:08,906 | INFO     | all data control threads have been joined
[2025-11-26 18:05:43] 2025-11-26 23:05:09,096 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,120 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,135 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:05:43] 2025-11-26 23:05:09,439 | INFO     | all job control threads have been joined
[2025-11-26 18:05:43] 2025-11-26 23:05:09,442 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,519 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,649 | INFO     | [payload] control thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,696 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,867 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:09,913 | INFO     | [data] control thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:10,261 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:05:43] 2025-11-26 23:05:10,434 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:10,443 | INFO     | [job] validate thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:10,447 | INFO     | [job] control thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:10,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:05:43] 2025-11-26 23:05:10,603 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:11,148 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:11,266 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:14,590 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:05:43] 2025-11-26 23:05:36,239 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:05:43] 2025-11-26 23:05:37,911 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139462391616)>', '<ExcThread(monitor, started 140139120543488)>']
[2025-11-26 18:05:43] 2025-11-26 23:05:39,748 | INFO     | PID=2850702 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:05:43] 2025-11-26 23:05:39,748 | INFO     | .. there are 45 such processes running
[2025-11-26 18:05:43] 2025-11-26 23:05:39,749 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:05:43] 2025-11-26 23:05:39,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:05:43] 2025-11-26 23:05:39,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:05:43] 2025-11-26 23:05:39,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:05:43] 2025-11-26 23:05:39,749 | INFO     | [monitor] control thread has ended
[2025-11-26 18:05:43] 2025-11-26 23:05:42,937 | INFO     | all workflow threads have been joined
[2025-11-26 18:05:43] 2025-11-26 23:05:42,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:05:43] 2025-11-26 23:05:42,939 | INFO     | traces error code: 0
[2025-11-26 18:05:43] 2025-11-26 23:05:42,939 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:05:43] 2025-11-26 23:05:43,096 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:05:43] 2025-11-26 23:05:43,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:05:43] 2025-11-26 23:05:43,101 [wrapper] pilotpid: 2850702
[2025-11-26 18:05:43] 2025-11-26 23:05:43,104 [wrapper] Pilot exit status: 0
[2025-11-26 18:05:43] 2025-11-26 23:05:43,117 [wrapper] pandaids: 6896450399
[2025-11-26 18:05:43] 2025-11-26 23:05:43,239 [wrapper] cleanup supervisor_pilot   38875 2850703
[2025-11-26 18:05:43] 2025-11-26 23:05:43,252 [wrapper] Test setup, not cleaning
[2025-11-26 18:05:43] 2025-11-26 23:05:43,282 [wrapper] apfmon messages muted
[2025-11-26 18:05:43] 2025-11-26 23:05:43,337 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:05:43] 2025-11-26 23:05:43,351 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:05:43]  *** Error codes and diagnostics ***
[2025-11-26 18:05:43]     "exeErrorCode": 0,
[2025-11-26 18:05:43]     "exeErrorDiag": "",
[2025-11-26 18:05:43]     "pilotErrorCode": 0,
[2025-11-26 18:05:43]     "pilotErrorDiag": "",
[2025-11-26 18:05:43]  *** Listing of results directory ***
[2025-11-26 18:05:43] total 1331464
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 18:05:43] -rwx------. 1 boincer umatlas     36292 Nov 24 22:36 runpilot2-wrapper.sh
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 22:36 queuedata.json
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:05:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:46 run_atlas
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:46 job.xml
[2025-11-26 18:05:43] -rw-r--r--. 2 boincer umatlas 410352147 Nov 25 18:46 EVNT.47483658._001494.pool.root.1
[2025-11-26 18:05:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:46 start_atlas.sh
[2025-11-26 18:05:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:46 shared
[2025-11-26 18:05:43] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 18:46 input.tar.gz
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:46 boinc_lockfile
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 18:46 pandaJob.out
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas        57 Nov 25 18:46 setup.sh.local
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas    991877 Nov 25 18:47 agis_schedconf.cvmfs.json
[2025-11-26 18:05:43] drwx------. 5 boincer umatlas      4096 Nov 25 18:47 pilot3
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas       533 Nov 26 17:48 boinc_task_state.xml
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas      6614 Nov 26 18:00 init_data.xml
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas 922597082 Nov 26 18:03 HITS.47556149._004807.pool.root.1
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas      1059 Nov 26 18:04 memory_monitor_summary.json
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:04 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas   2444202 Nov 26 18:04 log.47556149._004807.job.log.tgz.1
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas      8618 Nov 26 18:05 heartbeat.json
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas        95 Nov 26 18:05 pilot_heartbeat.json
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:05 wrapper_checkpoint.txt
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:05 boinc_mmap_file
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas      5010 Nov 26 18:05 pilotlog.txt
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas  10832071 Nov 26 18:05 log.47556149._004807.job.log.1
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas       353 Nov 26 18:05 output.list
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:05 runtime_log
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas  13291520 Nov 26 18:05 result.tar.gz
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas       658 Nov 26 18:05 VxoNDmT2yh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrIJKDmrjK5Pm.diag
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 18:05 runtime_log.err
[2025-11-26 18:05:43] -rw-r--r--. 1 boincer umatlas     21424 Nov 26 18:05 stderr.txt
[2025-11-26 18:05:43] HITS file was successfully produced:
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas 922597082 Nov 26 18:03 shared/HITS.pool.root.1
[2025-11-26 18:05:43]  *** Contents of shared directory: ***
[2025-11-26 18:05:43] total 1315296
[2025-11-26 18:05:43] -rw-r--r--. 2 boincer umatlas 410352147 Nov 25 18:46 ATLAS.root_0
[2025-11-26 18:05:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:46 start_atlas.sh
[2025-11-26 18:05:43] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 18:46 input.tar.gz
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas 922597082 Nov 26 18:03 HITS.pool.root.1
[2025-11-26 18:05:43] -rw-------. 1 boincer umatlas  13291520 Nov 26 18:05 result.tar.gz
18:05:45 (2839815): run_atlas exited; CPU time 344480.858491
18:05:45 (2839815): called boinc_finish(0)

</stderr_txt>
]]>

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