Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:28:44 (3584343): wrapper (7.7.26015): starting
18:28:44 (3584343): wrapper: running run_atlas (--nthreads 10)
[2025-11-25 18:28:44] Arguments: --nthreads 10
[2025-11-25 18:28:44] Threads: 10
[2025-11-25 18:28:44] Checking for CVMFS
[2025-11-25 18:28:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:28:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:28:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:28:45] 2.13.3.0 15397 29131 225964 153302 0 447 20152399 32935936 40551 16776704 0 294146211 99.625 281276446 36455 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:28:45] CVMFS is ok
[2025-11-25 18:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:28:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:28:45] Further information can be found at the LHC@home message board.
[2025-11-25 18:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:28:45] Checking for apptainer binary...
[2025-11-25 18:28:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:28:45] Running /usr/bin/apptainer --version
[2025-11-25 18:28:45] apptainer version 1.4.4-1.el9
[2025-11-25 18:28:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:28:45] c7-16-8.aglt2.org
[2025-11-25 18:28:45] apptainer works
[2025-11-25 18:28:45] Set ATHENA_PROC_NUMBER=10
[2025-11-25 18:28:45] Set ATHENA_CORE_NUMBER=10
[2025-11-25 18:28:45] Starting ATLAS job with PandaID=6896420953
[2025-11-25 18:28:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:20:07 (3584343): BOINC client no longer exists - exiting
22:20:07 (3584343): timer handler: client dead, exiting
22:31:40 (1289087): wrapper (7.7.26015): starting
22:31:40 (1289087): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:31:40] Arguments: --nthreads 8
[2025-11-25 22:31:40] Threads: 8
[2025-11-25 22:31:40] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:31:40] Checking for CVMFS
[2025-11-25 22:31:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:31:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:31:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:31:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:31:40] 2.13.3.0 15397 29374 237292 153307 1 747 31012748 32935936 35055 16776704 0 297281663 99.623 284852886 36428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:31:40] CVMFS is ok
[2025-11-25 22:31:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:31:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:31:40] Further information can be found at the LHC@home message board.
[2025-11-25 22:31:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:31:40] Checking for apptainer binary...
[2025-11-25 22:31:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:31:40] Running /usr/bin/apptainer --version
[2025-11-25 22:31:40] apptainer version 1.4.4-1.el9
[2025-11-25 22:31:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:31:41] c7-16-8.aglt2.org
[2025-11-25 22:31:41] apptainer works
[2025-11-25 22:31:41] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:31:41] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:31:41] Starting ATLAS job with PandaID=6896420953
[2025-11-25 22:31:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:35:43]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:35:43] 2025-11-27 01:35:07,749 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:35:43] 2025-11-27 01:35:08,799 | INFO     | time since job start (79396s) is within the limit (172800.0s)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,498 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:35:43] 2025-11-27 01:35:09,504 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3316.9394270833345
[2025-11-26 20:35:43] 2025-11-27 01:35:09,519 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896420953/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,520 | INFO     | extracted standard info from prmon json
[2025-11-26 20:35:43] 2025-11-27 01:35:09,520 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:35:43] 2025-11-27 01:35:09,520 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:35:43] 2025-11-27 01:35:09,540 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:35:43] 2025-11-27 01:35:09,541 | INFO     | sum of square deviations: 682830702242.4431
[2025-11-26 20:35:43] 2025-11-27 01:35:09,575 | INFO     | sum of deviations: 4523474262879.228
[2025-11-26 20:35:43] 2025-11-27 01:35:09,575 | INFO     | mean x: 1764167592.0591853
[2025-11-26 20:35:43] 2025-11-27 01:35:09,575 | INFO     | mean y: 3270399.5165257496
[2025-11-26 20:35:43] 2025-11-27 01:35:09,575 | INFO     | intersect: -11683618710.592556
[2025-11-26 20:35:43] 2025-11-27 01:35:09,577 | INFO     | chi2: 6.222805265476411
[2025-11-26 20:35:43] 2025-11-27 01:35:09,578 | INFO     | sum of square deviations: 674988631296.8114
[2025-11-26 20:35:43] 2025-11-27 01:35:09,610 | INFO     | sum of deviations: 4906585350553.836
[2025-11-26 20:35:43] 2025-11-27 01:35:09,611 | INFO     | mean x: 1764167439.5632715
[2025-11-26 20:35:43] 2025-11-27 01:35:09,611 | INFO     | mean y: 3277844.1057098764
[2025-11-26 20:35:43] 2025-11-27 01:35:09,611 | INFO     | intersect: -12820698314.21112
[2025-11-26 20:35:43] 2025-11-27 01:35:09,612 | INFO     | chi2: 4.005248712804687
[2025-11-26 20:35:43] 2025-11-27 01:35:09,612 | INFO     | current chi2=4.005248712804687 (change=35.63596252922355 %)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,613 | INFO     | sum of square deviations: 667206840551.1373
[2025-11-26 20:35:43] 2025-11-27 01:35:09,647 | INFO     | sum of deviations: 4878443579124.636
[2025-11-26 20:35:43] 2025-11-27 01:35:09,647 | INFO     | mean x: 1764167287.0673897
[2025-11-26 20:35:43] 2025-11-27 01:35:09,647 | INFO     | mean y: 3277291.4639814096
[2025-11-26 20:35:43] 2025-11-27 01:35:09,647 | INFO     | intersect: -12895856906.540403
[2025-11-26 20:35:43] 2025-11-27 01:35:09,648 | INFO     | chi2: 3.9831314646472933
[2025-11-26 20:35:43] 2025-11-27 01:35:09,649 | INFO     | current chi2=3.9831314646472933 (change=0.5522066104580616 %)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,649 | INFO     | right removable region: 1290
[2025-11-26 20:35:43] 2025-11-27 01:35:09,650 | INFO     | sum of square deviations: 674987790716.8113
[2025-11-26 20:35:43] 2025-11-27 01:35:09,681 | INFO     | sum of deviations: 4138734052968.8296
[2025-11-26 20:35:43] 2025-11-27 01:35:09,682 | INFO     | mean x: 1764167744.5632715
[2025-11-26 20:35:43] 2025-11-27 01:35:09,682 | INFO     | mean y: 3277873.4290123456
[2025-11-26 20:35:43] 2025-11-27 01:35:09,682 | INFO     | intersect: -10813837961.835796
[2025-11-26 20:35:43] 2025-11-27 01:35:09,683 | INFO     | chi2: 4.214372392707556
[2025-11-26 20:35:43] 2025-11-27 01:35:09,683 | INFO     | current chi2=4.214372392707556 (change=32.27536114477931 %)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,684 | INFO     | sum of square deviations: 667205238448.2706
[2025-11-26 20:35:43] 2025-11-27 01:35:09,716 | INFO     | sum of deviations: 3972574253243.931
[2025-11-26 20:35:43] 2025-11-27 01:35:09,716 | INFO     | mean x: 1764167897.066615
[2025-11-26 20:35:43] 2025-11-27 01:35:09,716 | INFO     | mean y: 3281128.919442293
[2025-11-26 20:35:43] 2025-11-27 01:35:09,717 | INFO     | intersect: -10500665126.936712
[2025-11-26 20:35:43] 2025-11-27 01:35:09,717 | INFO     | chi2: 4.017308170334107
[2025-11-26 20:35:43] 2025-11-27 01:35:09,718 | INFO     | current chi2=4.017308170334107 (change=4.6760040169787676 %)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,718 | INFO     | left removable region: 20
[2025-11-26 20:35:43] 2025-11-27 01:35:09,719 | INFO     | sum of square deviations: 635173047898.8187
[2025-11-26 20:35:43] 2025-11-27 01:35:09,745 | INFO     | sum of deviations: 4039655668958.8057
[2025-11-26 20:35:43] 2025-11-27 01:35:09,745 | INFO     | mean x: 1764167866.5826771
[2025-11-26 20:35:43] 2025-11-27 01:35:09,745 | INFO     | mean y: 3293631.1637795274
[2025-11-26 20:35:43] 2025-11-27 01:35:09,745 | INFO     | intersect: -11216689248.794512
[2025-11-26 20:35:43] 2025-11-27 01:35:09,746 | INFO     | chi2: 1.5289835973771337
[2025-11-26 20:35:43] 2025-11-27 01:35:09,746 | INFO     | current memory leak: 6.36 B/s (using 1270 data points, chi2=1.53)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | could have reported an average CPU frequency of 3220 MHz (47 samples)
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | ..............................
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | . Timing measurements:
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | . get job = 0 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | . initial setup = 2 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | . payload setup = 6 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | . stage-in = 0 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,748 | INFO     | . payload execution = 79359 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,749 | INFO     | . stage-out = 3 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,749 | INFO     | . log creation = 0 s
[2025-11-26 20:35:43] 2025-11-27 01:35:09,749 | INFO     | ..............................
[2025-11-26 20:35:43] 2025-11-27 01:35:10,218 | INFO     | 
[2025-11-26 20:35:43] 2025-11-27 01:35:10,218 | INFO     | job summary report
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | --------------------------------------------------
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | PanDA job id: 6896420953
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | task id: 47556149
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | errors: (none)
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | pilot state: finished 
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | transexitcode: 0
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | exeerrorcode: 0
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | exeerrordiag: 
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | exitcode: 0
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | exitmsg: OK
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | cpuconsumptiontime: 198455 s
[2025-11-26 20:35:43] 2025-11-27 01:35:10,219 | INFO     | nevents: 1000
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | neventsw: 0
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | pid: 1377356
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | pgrp: 1377356
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | corecount: 8
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | event service: False
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 79369: 2344108, 79373: 2353102, 79374: 2353158, 79381: 2353532}
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | --------------------------------------------------
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | 
[2025-11-26 20:35:43] 2025-11-27 01:35:10,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 20:35:43] 2025-11-27 01:35:10,271 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,271 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,272 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | job 6896420953 has completed (purged errors)
[2025-11-26 20:35:43] 2025-11-27 01:35:10,273 | INFO     | overall cleanup function is called
[2025-11-26 20:35:43] 2025-11-27 01:35:11,290 | INFO     | --- collectZombieJob: --- 10, [1377356]
[2025-11-26 20:35:43] 2025-11-27 01:35:11,290 | INFO     | zombie collector waiting for pid 1377356
[2025-11-26 20:35:43] 2025-11-27 01:35:11,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:35:43] 2025-11-27 01:35:11,291 | INFO     | collected zombie processes
[2025-11-26 20:35:43] 2025-11-27 01:35:11,291 | INFO     | will attempt to kill all subprocesses of pid=1377356
[2025-11-26 20:35:43] 2025-11-27 01:35:12,020 | INFO     | process IDs to be killed: [1377356] (in reverse order)
[2025-11-26 20:35:43] 2025-11-27 01:35:12,257 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:35:43] 2025-11-27 01:35:12,257 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:35:43] 2025-11-27 01:35:12,288 | INFO     | did not find any defunct processes belonging to 1377356
[2025-11-26 20:35:43] 2025-11-27 01:35:12,320 | INFO     | did not find any defunct processes belonging to 1377356
[2025-11-26 20:35:43] 2025-11-27 01:35:12,321 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:35:43] 2025-11-27 01:35:12,322 | INFO     | ready for new job
[2025-11-26 20:35:43] 2025-11-27 01:35:12,322 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:35:43] 2025-11-27 01:35:12,328 | INFO     | ***************************************
[2025-11-26 20:35:43] 2025-11-27 01:35:12,328 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:35:43] 2025-11-27 01:35:12,328 | INFO     | ***************************************
[2025-11-26 20:35:43] 2025-11-27 01:35:12,328 | INFO     | 
[2025-11-26 20:35:43] 2025-11-27 01:35:12,333 | INFO     | architecture information:
[2025-11-26 20:35:43] 2025-11-27 01:35:12,334 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:35:43] 2025-11-27 01:35:12,353 | INFO     | cat /etc/os-release:
[2025-11-26 20:35:43] NAME="CentOS Linux"
[2025-11-26 20:35:43] VERSION="7 (Core)"
[2025-11-26 20:35:43] ID="centos"
[2025-11-26 20:35:43] ID_LIKE="rhel fedora"
[2025-11-26 20:35:43] VERSION_ID="7"
[2025-11-26 20:35:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:35:43] ANSI_COLOR="0;31"
[2025-11-26 20:35:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:35:43] HOME_URL="https://www.centos.org/"
[2025-11-26 20:35:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:35:43] 
[2025-11-26 20:35:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:35:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:35:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:35:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:35:43] 
[2025-11-26 20:35:43] 2025-11-27 01:35:12,354 | INFO     | ***************************************
[2025-11-26 20:35:43] 2025-11-27 01:35:12,863 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 20:35:43] 2025-11-27 01:35:12,884 | INFO     | sufficient remaining disk space (66236448768 B)
[2025-11-26 20:35:43] 2025-11-27 01:35:12,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:35:43] 2025-11-27 01:35:12,884 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:35:43] 2025-11-27 01:35:12,884 | INFO     | update_server=False
[2025-11-26 20:35:43] 2025-11-27 01:35:12,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:35:43] 2025-11-27 01:35:12,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:35:43] 2025-11-27 01:35:12,978 | INFO     | all data control threads have been joined
[2025-11-26 20:35:43] 2025-11-27 01:35:13,299 | INFO     | all payload control threads have been joined
[2025-11-26 20:35:43] 2025-11-27 01:35:13,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:35:43] 2025-11-27 01:35:13,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:35:43] 2025-11-27 01:35:13,767 | INFO     | aborting loop
[2025-11-26 20:35:43] 2025-11-27 01:35:13,889 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:13,983 | INFO     | [data] control thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,009 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,232 | INFO     | [job] validate thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,286 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,306 | INFO     | [payload] control thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,426 | INFO     | all job control threads have been joined
[2025-11-26 20:35:43] 2025-11-27 01:35:14,585 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,741 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,778 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,783 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:14,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:35:43] 2025-11-27 01:35:14,889 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:15,225 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:15,432 | INFO     | [job] control thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:15,842 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:17,681 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:35:43] 2025-11-27 01:35:17,772 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:35:43] 2025-11-27 01:35:19,386 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140073493378880)>', '<ExcThread(monitor, started 140072766662400)>']
[2025-11-26 20:35:43] 2025-11-27 01:35:24,411 | INFO     | all workflow threads have been joined
[2025-11-26 20:35:43] 2025-11-27 01:35:24,412 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:35:43] 2025-11-27 01:35:24,412 | INFO     | traces error code: 0
[2025-11-26 20:35:43] 2025-11-27 01:35:24,412 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:35:43] 2025-11-27 01:35:42,812 | INFO     | PID=1317304 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:35:43] 2025-11-27 01:35:42,812 | INFO     | .. there are 69 such processes running
[2025-11-26 20:35:43] 2025-11-27 01:35:42,813 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:35:43] 2025-11-27 01:35:42,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:35:43] 2025-11-27 01:35:42,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:35:43] 2025-11-27 01:35:42,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:35:43] 2025-11-27 01:35:42,813 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 20:35:43] 2025-11-27 01:35:42,813 | INFO     | [monitor] control thread has ended
[2025-11-26 20:35:43] 2025-11-27 01:35:43,012 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:35:43] 2025-11-27 01:35:43,015 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:35:43] 2025-11-27 01:35:43,019 [wrapper] pilotpid: 1317304
[2025-11-26 20:35:43] 2025-11-27 01:35:43,022 [wrapper] Pilot exit status: 0
[2025-11-26 20:35:43] 2025-11-27 01:35:43,034 [wrapper] pandaids: 6896420953 6896420953
[2025-11-26 20:35:43] 2025-11-27 01:35:43,194 [wrapper] cleanup supervisor_pilot 3682364 1317305
[2025-11-26 20:35:43] 2025-11-27 01:35:43,199 [wrapper] Test setup, not cleaning
[2025-11-26 20:35:43] 2025-11-27 01:35:43,203 [wrapper] apfmon messages muted
[2025-11-26 20:35:43] 2025-11-27 01:35:43,206 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:35:43] 2025-11-27 01:35:43,210 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:35:43]  *** Error codes and diagnostics ***
[2025-11-26 20:35:43]     "exeErrorCode": 0,
[2025-11-26 20:35:43]     "exeErrorDiag": "",
[2025-11-26 20:35:43]     "pilotErrorCode": 0,
[2025-11-26 20:35:43]     "pilotErrorDiag": "",
[2025-11-26 20:35:43]  *** Listing of results directory ***
[2025-11-26 20:35:43] total 1719132
[2025-11-26 20:35:43] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 22:04 pilot3.tar.gz
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 22:17 queuedata.json
[2025-11-26 20:35:43] -rwx------. 1 boincer umatlas     36292 Nov 24 22:20 runpilot2-wrapper.sh
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:35:43] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:28 run_atlas
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:28 job.xml
[2025-11-26 20:35:43] -rw-r--r--. 3 boincer umatlas 410611290 Nov 25 18:28 EVNT.47483658._001485.pool.root.1
[2025-11-26 20:35:43] -rw-r--r--. 3 boincer umatlas 410611290 Nov 25 18:28 ATLAS.root_0
[2025-11-26 20:35:43] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:28 shared
[2025-11-26 20:35:43] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 18:28 input.tar.gz
[2025-11-26 20:35:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:28 start_atlas.sh
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:28 boinc_lockfile
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 22:31 pandaJob.out
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas        57 Nov 25 22:31 setup.sh.local
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas    991877 Nov 25 22:31 agis_schedconf.cvmfs.json
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:28 boinc_task_state.xml
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 20:30 init_data.xml
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas 912245219 Nov 26 20:34 HITS.47556149._004715.pool.root.1
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas        96 Nov 26 20:34 pilot_heartbeat.json
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas      1073 Nov 26 20:34 memory_monitor_summary.json
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas   2286935 Nov 26 20:35 log.47556149._004715.job.log.tgz.1
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas      7935 Nov 26 20:35 heartbeat.json
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:35 boinc_mmap_file
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:35 wrapper_checkpoint.txt
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas       893 Nov 26 20:35 pilotlog.txt
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas   9213310 Nov 26 20:35 log.47556149._004715.job.log.1
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas       353 Nov 26 20:35 output.list
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:35 runtime_log
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas  11520000 Nov 26 20:35 result.tar.gz
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas      9423 Nov 26 20:35 runtime_log.err
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas       790 Nov 26 20:35 aAZNDmgmyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu4LKDmgxGj0n.diag
[2025-11-26 20:35:43] -rw-r--r--. 1 boincer umatlas     23592 Nov 26 20:35 stderr.txt
[2025-11-26 20:35:43] HITS file was successfully produced:
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas 912245219 Nov 26 20:34 shared/HITS.pool.root.1
[2025-11-26 20:35:43]  *** Contents of shared directory: ***
[2025-11-26 20:35:43] total 1303712
[2025-11-26 20:35:43] -rw-r--r--. 3 boincer umatlas 410611290 Nov 25 18:28 ATLAS.root_0
[2025-11-26 20:35:43] -rw-r--r--. 2 boincer umatlas    590107 Nov 25 18:28 input.tar.gz
[2025-11-26 20:35:43] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:28 start_atlas.sh
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas 912245219 Nov 26 20:34 HITS.pool.root.1
[2025-11-26 20:35:43] -rw-------. 1 boincer umatlas  11520000 Nov 26 20:35 result.tar.gz
20:35:44 (1289087): run_atlas exited; CPU time 200387.508270
20:35:44 (1289087): called boinc_finish(0)

</stderr_txt>
]]>

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