Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:36:07 (15042): wrapper (7.7.26015): starting
17:36:07 (15042): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 17:36:07] Arguments: --nthreads 8
[2025-11-27 17:36:07] Threads: 8
[2025-11-27 17:36:07] Checking for CVMFS
[2025-11-27 17:36:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 17:36:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 17:36:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 17:36:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 17:36:10] 2.11.2.0 1205 286884 141256 153373 1 85 21937817 25165824 937 130560 12 130897978 99.870 76495100 2683 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 17:36:10] CVMFS is ok
[2025-11-27 17:36:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 17:36:10] Checking for apptainer binary...
[2025-11-27 17:36:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 17:36:10] Running /usr/bin/apptainer --version
[2025-11-27 17:36:10] apptainer version 1.3.2-1.el7
[2025-11-27 17:36:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 17:36:31] cg-vwn325.simple-grid.lan
[2025-11-27 17:36:31] apptainer works
[2025-11-27 17:36:31] Set ATHENA_PROC_NUMBER=8
[2025-11-27 17:36:31] Set ATHENA_CORE_NUMBER=8
[2025-11-27 17:36:31] Starting ATLAS job with PandaID=6896450023
[2025-11-27 17:36:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 16:50:25]  *** The last 200 lines of the pilot log: ***
[2025-11-28 16:50:25] 2025-11-28 15:49:30,035 | INFO     | monitor loop #5649: job 0:6896450023 is in state 'finished'
[2025-11-28 16:50:25] 2025-11-28 15:49:30,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:50:25] 2025-11-28 15:49:30,188 | INFO     | time since job start (83319s) is within the limit (172800.0s)
[2025-11-28 16:50:25] 2025-11-28 15:49:32,196 | INFO     | time since job start (83321s) is within the limit (172800.0s)
[2025-11-28 16:50:25] 2025-11-28 15:49:32,540 | INFO     | monitor loop #5650: job 0:6896450023 is in state 'finished'
[2025-11-28 16:50:25] 2025-11-28 15:49:32,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:50:25] 2025-11-28 15:49:34,204 | INFO     | time since job start (83323s) is within the limit (172800.0s)
[2025-11-28 16:50:25] 2025-11-28 15:49:35,051 | INFO     | monitor loop #5651: job 0:6896450023 is in state 'finished'
[2025-11-28 16:50:25] 2025-11-28 15:49:35,051 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:50:25] 2025-11-28 15:49:36,219 | INFO     | time since job start (83325s) is within the limit (172800.0s)
[2025-11-28 16:50:25] 2025-11-28 15:49:37,559 | INFO     | monitor loop #5652: job 0:6896450023 is in state 'finished'
[2025-11-28 16:50:25] 2025-11-28 15:49:37,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:50:25] 2025-11-28 15:49:38,230 | INFO     | time since job start (83327s) is within the limit (172800.0s)
[2025-11-28 16:50:25] 2025-11-28 15:49:39,834 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 16:50:25] 2025-11-28 15:49:39,835 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 16:50:25] 2025-11-28 15:49:39,837 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6896450023/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 16:50:25] 2025-11-28 15:49:39,838 | INFO     | extracted standard info from prmon json
[2025-11-28 16:50:25] 2025-11-28 15:49:39,838 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 16:50:25] 2025-11-28 15:49:39,838 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 16:50:25] 2025-11-28 15:49:39,863 | INFO     | fitting pss+swap vs Time
[2025-11-28 16:50:25] 2025-11-28 15:49:39,866 | INFO     | sum of square deviations: 771427596383.6676
[2025-11-28 16:50:25] 2025-11-28 15:49:39,930 | INFO     | sum of deviations: 3707790711948.5723
[2025-11-28 16:50:25] 2025-11-28 15:49:39,931 | INFO     | mean x: 1764303515.0627306
[2025-11-28 16:50:25] 2025-11-28 15:49:39,931 | INFO     | mean y: 2793319.9933579336
[2025-11-28 16:50:25] 2025-11-28 15:49:39,931 | INFO     | intersect: -8477157639.5965395
[2025-11-28 16:50:25] 2025-11-28 15:49:39,933 | INFO     | chi2: 40.275273062937714
[2025-11-28 16:50:25] 2025-11-28 15:49:39,935 | INFO     | sum of square deviations: 762919699305.4996
[2025-11-28 16:50:25] 2025-11-28 15:49:39,989 | INFO     | sum of deviations: 4146304642868.5317
[2025-11-28 16:50:25] 2025-11-28 15:49:39,989 | INFO     | mean x: 1764303362.5666666
[2025-11-28 16:50:25] 2025-11-28 15:49:39,989 | INFO     | mean y: 2801179.1274074074
[2025-11-28 16:50:25] 2025-11-28 15:49:39,989 | INFO     | intersect: -9585808513.738075
[2025-11-28 16:50:25] 2025-11-28 15:49:39,991 | INFO     | chi2: 37.01724466664168
[2025-11-28 16:50:25] 2025-11-28 15:49:39,991 | INFO     | current chi2=37.01724466664168 (change=8.089401135045687 %)
[2025-11-28 16:50:25] 2025-11-28 15:49:39,991 | INFO     | right removable region: 1349
[2025-11-28 16:50:25] 2025-11-28 15:49:39,993 | INFO     | sum of square deviations: 762918820905.4994
[2025-11-28 16:50:25] 2025-11-28 15:49:40,054 | INFO     | sum of deviations: 3132841944386.603
[2025-11-28 16:50:25] 2025-11-28 15:49:40,055 | INFO     | mean x: 1764303667.5666666
[2025-11-28 16:50:25] 2025-11-28 15:49:40,055 | INFO     | mean y: 2803624.848888889
[2025-11-28 16:50:25] 2025-11-28 15:49:40,055 | INFO     | intersect: -7242114682.223024
[2025-11-28 16:50:25] 2025-11-28 15:49:40,056 | INFO     | chi2: 35.09601080282725
[2025-11-28 16:50:25] 2025-11-28 15:49:40,057 | INFO     | current chi2=35.09601080282725 (change=12.859657716080255 %)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,057 | INFO     | left removable region: 10
[2025-11-28 16:50:25] 2025-11-28 15:49:40,059 | INFO     | sum of square deviations: 744421268885.3821
[2025-11-28 16:50:25] 2025-11-28 15:49:40,072 | INFO     | monitor loop #5653: job 0:6896450023 is in state 'finished'
[2025-11-28 16:50:25] 2025-11-28 15:49:40,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,125 | INFO     | sum of deviations: 3142286380774.753
[2025-11-28 16:50:25] 2025-11-28 15:49:40,125 | INFO     | mean x: 1764303637.0754294
[2025-11-28 16:50:25] 2025-11-28 15:49:40,125 | INFO     | mean y: 2822846.0321135176
[2025-11-28 16:50:25] 2025-11-28 15:49:40,126 | INFO     | intersect: -7444502374.315778
[2025-11-28 16:50:25] 2025-11-28 15:49:40,127 | INFO     | chi2: 26.82573777436987
[2025-11-28 16:50:25] 2025-11-28 15:49:40,128 | INFO     | current memory leak: 4.22 B/s (using 1339 data points, chi2=26.83)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | ..............................
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | . Timing measurements:
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | . get job = 0 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | . initial setup = 10 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | . payload setup = 172 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,129 | INFO     | . stage-in = 0 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,130 | INFO     | . payload execution = 82814 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,130 | INFO     | . stage-out = 8 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,130 | INFO     | . log creation = 2 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,130 | INFO     | ..............................
[2025-11-28 16:50:25] 2025-11-28 15:49:40,250 | INFO     | time since job start (83329s) is within the limit (172800.0s)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,263 | INFO     | 
[2025-11-28 16:50:25] 2025-11-28 15:49:40,263 | INFO     | job summary report
[2025-11-28 16:50:25] 2025-11-28 15:49:40,263 | INFO     | --------------------------------------------------
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | PanDA job id: 6896450023
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | task id: 47556149
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | errors: (none)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | pilot state: finished 
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | transexitcode: 0
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | exeerrorcode: 0
[2025-11-28 16:50:25] 2025-11-28 15:49:40,264 | INFO     | exeerrordiag: 
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | exitcode: 0
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | exitmsg: OK
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | cpuconsumptiontime: 315463 s
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | nevents: 1000
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | neventsw: 0
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | pid: 25284
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | pgrp: 25284
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | corecount: 8
[2025-11-28 16:50:25] 2025-11-28 15:49:40,265 | INFO     | event service: False
[2025-11-28 16:50:25] 2025-11-28 15:49:40,266 | INFO     | sizes: {0: 2283487, 1: 2284344, 2: 2284372, 13: 2284372, 24: 2284428, 34: 2284456, 45: 2284612, 56: 2284640, 67: 2284668, 77: 2284696, 88: 2284752, 99: 2285060, 10
[2025-11-28 16:50:25] 2025-11-28 15:49:40,266 | INFO     | --------------------------------------------------
[2025-11-28 16:50:25] 2025-11-28 15:49:40,266 | INFO     | 
[2025-11-28 16:50:25] 2025-11-28 15:49:40,266 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-28 16:50:25] 2025-11-28 15:49:40,743 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,743 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,743 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,743 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,743 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,743 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,744 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 16:50:25] 2025-11-28 15:49:40,745 | INFO     | job 6896450023 has completed (purged errors)
[2025-11-28 16:50:25] 2025-11-28 15:49:40,746 | INFO     | overall cleanup function is called
[2025-11-28 16:50:25] 2025-11-28 15:49:41,769 | INFO     | --- collectZombieJob: --- 10, [25284]
[2025-11-28 16:50:25] 2025-11-28 15:49:41,769 | INFO     | zombie collector waiting for pid 25284
[2025-11-28 16:50:25] 2025-11-28 15:49:41,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 16:50:25] 2025-11-28 15:49:41,770 | INFO     | collected zombie processes
[2025-11-28 16:50:25] 2025-11-28 15:49:41,770 | INFO     | will attempt to kill all subprocesses of pid=25284
[2025-11-28 16:50:25] 2025-11-28 15:49:41,860 | INFO     | process IDs to be killed: [25284] (in reverse order)
[2025-11-28 16:50:25] 2025-11-28 15:49:42,886 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 16:50:25] 2025-11-28 15:49:42,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 16:50:25] 2025-11-28 15:49:42,888 | INFO     | did not find any defunct processes belonging to 25284
[2025-11-28 16:50:25] 2025-11-28 15:49:42,890 | INFO     | did not find any defunct processes belonging to 25284
[2025-11-28 16:50:25] 2025-11-28 15:49:42,932 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 16:50:25] 2025-11-28 15:49:42,932 | INFO     | ready for new job
[2025-11-28 16:50:25] 2025-11-28 15:49:42,932 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 16:50:25] 2025-11-28 15:49:42,937 | INFO     | ***************************************
[2025-11-28 16:50:25] 2025-11-28 15:49:42,938 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 16:50:25] 2025-11-28 15:49:42,938 | INFO     | ***************************************
[2025-11-28 16:50:25] 2025-11-28 15:49:42,938 | INFO     | 
[2025-11-28 16:50:25] 2025-11-28 15:49:42,939 | INFO     | pilot is running in a VM
[2025-11-28 16:50:25] 2025-11-28 15:49:42,939 | INFO     | architecture information:
[2025-11-28 16:50:25] 2025-11-28 15:49:42,952 | INFO     | executing command: cat /etc/os-release
[2025-11-28 16:50:25] 2025-11-28 15:49:43,266 | INFO     | cat /etc/os-release:
[2025-11-28 16:50:25] NAME="CentOS Linux"
[2025-11-28 16:50:25] VERSION="7 (Core)"
[2025-11-28 16:50:25] ID="centos"
[2025-11-28 16:50:25] ID_LIKE="rhel fedora"
[2025-11-28 16:50:25] VERSION_ID="7"
[2025-11-28 16:50:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 16:50:25] ANSI_COLOR="0;31"
[2025-11-28 16:50:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 16:50:25] HOME_URL="https://www.centos.org/"
[2025-11-28 16:50:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 16:50:25] 
[2025-11-28 16:50:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 16:50:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 16:50:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 16:50:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 16:50:25] 
[2025-11-28 16:50:25] 2025-11-28 15:49:43,267 | INFO     | ***************************************
[2025-11-28 16:50:25] 2025-11-28 15:49:43,770 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-28 16:50:25] 2025-11-28 15:49:44,055 | INFO     | sufficient remaining disk space (495009660928 B)
[2025-11-28 16:50:25] 2025-11-28 15:49:44,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 16:50:25] 2025-11-28 15:49:44,056 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 16:50:25] 2025-11-28 15:49:44,056 | INFO     | update_server=False
[2025-11-28 16:50:25] 2025-11-28 15:49:44,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 16:50:25] 2025-11-28 15:49:44,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 16:50:25] 2025-11-28 15:49:44,057 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:50:25] 2025-11-28 15:49:44,058 | INFO     | aborting loop
[2025-11-28 16:50:25] 2025-11-28 15:49:44,145 | INFO     | all data control threads have been joined
[2025-11-28 16:50:25] 2025-11-28 15:49:44,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 16:50:25] 2025-11-28 15:49:44,668 | INFO     | all payload control threads have been joined
[2025-11-28 16:50:25] 2025-11-28 15:49:44,699 | INFO     | all job control threads have been joined
[2025-11-28 16:50:25] 2025-11-28 15:49:45,062 | INFO     | [job] retrieve thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,063 | INFO     | [job] job monitor thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,151 | INFO     | [data] control thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,262 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 16:50:25] 2025-11-28 15:49:45,303 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,559 | INFO     | [job] validate thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,674 | INFO     | [payload] control thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,705 | INFO     | [job] control thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,800 | INFO     | [data] copytool_in thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,829 | INFO     | [payload] validate_post thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:45,967 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:46,065 | INFO     | [data] copytool_out thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:46,114 | INFO     | [payload] failed_post thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:46,146 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:46,284 | INFO     | [job] queue monitor thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:49:48,504 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 16:50:25] 2025-11-28 15:50:13,370 | INFO     | PID=18777 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 16:50:25] 2025-11-28 15:50:13,370 | INFO     | .. there are 2 such processes running
[2025-11-28 16:50:25] 2025-11-28 15:50:13,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 16:50:25] 2025-11-28 15:50:13,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 16:50:25] 2025-11-28 15:50:13,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 16:50:25] 2025-11-28 15:50:15,886 | INFO     | [monitor] cgroup control has ended
[2025-11-28 16:50:25] 2025-11-28 15:50:15,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155561498432)>', '<ExcThread(monitor, started 140155334510336)>']
[2025-11-28 16:50:25] 2025-11-28 15:50:16,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 16:50:25] 2025-11-28 15:50:16,389 | INFO     | [monitor] control thread has ended
[2025-11-28 16:50:25] 2025-11-28 15:50:20,993 | INFO     | all workflow threads have been joined
[2025-11-28 16:50:25] 2025-11-28 15:50:20,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 16:50:25] 2025-11-28 15:50:20,994 | INFO     | traces error code: 0
[2025-11-28 16:50:25] 2025-11-28 15:50:20,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 16:50:25] 2025-11-28 15:50:21,409 [wrapper] ==== pilot stdout END ====
[2025-11-28 16:50:25] 2025-11-28 15:50:21,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 16:50:25] 2025-11-28 15:50:21,591 [wrapper] pilotpid: 18777
[2025-11-28 16:50:25] 2025-11-28 15:50:21,698 [wrapper] Pilot exit status: 0
[2025-11-28 16:50:25] 2025-11-28 15:50:21,721 [wrapper] pandaids: 6896450023
[2025-11-28 16:50:25] 2025-11-28 15:50:21,825 [wrapper] cleanup supervisor_pilot 26452 18778
[2025-11-28 16:50:25] 2025-11-28 15:50:21,903 [wrapper] Test setup, not cleaning
[2025-11-28 16:50:25] 2025-11-28 15:50:22,018 [wrapper] apfmon messages muted
[2025-11-28 16:50:25] 2025-11-28 15:50:22,132 [wrapper] ==== wrapper stdout END ====
[2025-11-28 16:50:25] 2025-11-28 15:50:22,241 [wrapper] ==== wrapper stderr END ====
[2025-11-28 16:50:25]  *** Error codes and diagnostics ***
[2025-11-28 16:50:25]     "exeErrorCode": 0,
[2025-11-28 16:50:25]     "exeErrorDiag": "",
[2025-11-28 16:50:25]     "pilotErrorCode": 0,
[2025-11-28 16:50:25]     "pilotErrorDiag": "",
[2025-11-28 16:50:25]  *** Listing of results directory ***
[2025-11-28 16:50:25] total 1323908
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc    576529 Nov 25 04:04 pilot3.tar.gz
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc      5112 Nov 25 04:30 queuedata.json
[2025-11-28 16:50:25] -rwx------. 1 boinc boinc     36292 Nov 25 04:30 runpilot2-wrapper.sh
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc       100 Nov 27 17:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 16:50:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 17:36 run_atlas
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc       105 Nov 27 17:36 job.xml
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc      6392 Nov 27 17:36 init_data.xml
[2025-11-28 16:50:25] -rw-r--r--. 2 boinc boinc 408962410 Nov 27 17:36 EVNT.47483658._001490.pool.root.1
[2025-11-28 16:50:25] -rw-r--r--. 2 boinc boinc     15847 Nov 27 17:36 start_atlas.sh
[2025-11-28 16:50:25] drwxrwx--x. 2 boinc boinc        68 Nov 27 17:36 shared
[2025-11-28 16:50:25] -rw-r--r--. 2 boinc boinc    590112 Nov 27 17:36 input.tar.gz
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc         0 Nov 27 17:36 boinc_lockfile
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc      2786 Nov 27 17:36 pandaJob.out
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc    991572 Nov 27 17:40 agis_schedconf.cvmfs.json
[2025-11-28 16:50:25] drwx------. 5 boinc boinc      4096 Nov 27 17:40 pilot3
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc       533 Nov 28 16:19 boinc_task_state.xml
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc 915509118 Nov 28 16:46 HITS.47556149._004768.pool.root.1
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc      1033 Nov 28 16:47 memory_monitor_summary.json
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc   1516240 Nov 28 16:47 agis_ddmendpoints.agis.ALL.json
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc   2459841 Nov 28 16:47 log.47556149._004768.job.log.tgz.1
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc      8627 Nov 28 16:49 heartbeat.json
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc        95 Nov 28 16:50 pilot_heartbeat.json
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc      8192 Nov 28 16:50 boinc_mmap_file
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc        29 Nov 28 16:50 wrapper_checkpoint.txt
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc      4885 Nov 28 16:50 pilotlog.txt
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc  11191985 Nov 28 16:50 log.47556149._004768.job.log.1
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc       353 Nov 28 16:50 output.list
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc       620 Nov 28 16:50 runtime_log
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc  13670400 Nov 28 16:50 result.tar.gz
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc      8833 Nov 28 16:50 runtime_log.err
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc       662 Nov 28 16:50 BOUMDmYwyh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJIJKDmKU5pin.diag
[2025-11-28 16:50:25] -rw-r--r--. 1 boinc boinc     21445 Nov 28 16:50 stderr.txt
[2025-11-28 16:50:25] HITS file was successfully produced:
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc 915509118 Nov 28 16:46 shared/HITS.pool.root.1
[2025-11-28 16:50:25]  *** Contents of shared directory: ***
[2025-11-28 16:50:25] total 1307380
[2025-11-28 16:50:25] -rw-r--r--. 2 boinc boinc 408962410 Nov 27 17:36 ATLAS.root_0
[2025-11-28 16:50:25] -rw-r--r--. 2 boinc boinc     15847 Nov 27 17:36 start_atlas.sh
[2025-11-28 16:50:25] -rw-r--r--. 2 boinc boinc    590112 Nov 27 17:36 input.tar.gz
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc 915509118 Nov 28 16:46 HITS.pool.root.1
[2025-11-28 16:50:25] -rw-------. 1 boinc boinc  13670400 Nov 28 16:50 result.tar.gz
16:50:26 (15042): run_atlas exited; CPU time 315741.841664
16:50:26 (15042): called boinc_finish(0)

</stderr_txt>
]]>

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