Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:25:51 (1975444): wrapper (7.7.26015): starting
23:25:51 (1975444): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 23:25:51] Arguments: --nthreads 3
[2025-11-25 23:25:51] Threads: 3
[2025-11-25 23:25:51] Checking for CVMFS
[2025-11-25 23:25:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:25:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:25:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:25:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:25:52] 2.9.2.0 1308651 143 64492 153300 0 88 35403880 36864000 0 130560 0 2003448 99.998 9451 6760 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 23:25:52] CVMFS is ok
[2025-11-25 23:25:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:25:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:25:52] Further information can be found at the LHC@home message board.
[2025-11-25 23:25:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:25:52] Checking for apptainer binary...
[2025-11-25 23:25:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:25:52] Running /usr/bin/apptainer --version
[2025-11-25 23:25:52] apptainer version 1.4.1-1.1
[2025-11-25 23:25:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:25:52] thA335
[2025-11-25 23:25:52] apptainer works
[2025-11-25 23:25:52] Set ATHENA_PROC_NUMBER=3
[2025-11-25 23:25:52] Set ATHENA_CORE_NUMBER=3
[2025-11-25 23:25:52] Starting ATLAS job with PandaID=6896420952
[2025-11-25 23:25:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:30:10]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:30:10] 2025-11-25 22:29:19,106 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | INFO     | sufficient remaining disk space (826209730560 B)
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | INFO     | update_server=False
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:30:10] 2025-11-25 22:29:19,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:30:10] 2025-11-25 22:29:19,326 | INFO     | all data control threads have been joined
[2025-11-25 23:30:10] 2025-11-25 22:29:19,710 | INFO     | all payload control threads have been joined
[2025-11-25 23:30:10] 2025-11-25 22:29:20,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:30:10] 2025-11-25 22:29:20,071 | INFO     | aborting loop
[2025-11-25 23:30:10] 2025-11-25 22:29:20,124 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,124 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,141 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,242 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,262 | INFO     | all job control threads have been joined
[2025-11-25 23:30:10] 2025-11-25 22:29:20,332 | INFO     | [data] control thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,469 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,649 | INFO     | [job] validate thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,716 | INFO     | [payload] control thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,737 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,781 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,781 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:20,850 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:21,077 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:21,126 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:21,268 | INFO     | [job] control thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:21,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:30:10] 2025-11-25 22:29:25,308 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:30:10] 2025-11-25 22:29:48,767 | INFO     | PID=1979177 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:30:10] 2025-11-25 22:29:48,767 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:30:10] 2025-11-25 22:29:48,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:30:10] 2025-11-25 22:29:48,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:30:10] 2025-11-25 22:30:03,897 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:30:10] 2025-11-25 22:30:05,167 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139874551224128)>', '<ExcThread(monitor, started 139873881134848)>']
[2025-11-25 23:30:10] 2025-11-25 22:30:05,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:30:10] 2025-11-25 22:30:05,854 | INFO     | [monitor] control thread has ended
[2025-11-25 23:30:10] 2025-11-25 22:30:10,194 | INFO     | all workflow threads have been joined
[2025-11-25 23:30:10] 2025-11-25 22:30:10,194 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:30:10] 2025-11-25 22:30:10,194 | INFO     | traces error code: 0
[2025-11-25 23:30:10] 2025-11-25 22:30:10,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:30:10] 2025-11-25 22:30:10,240 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:30:10] 2025-11-25 22:30:10,244 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:30:10] 2025-11-25 22:30:10,247 [wrapper] pilotpid: 1979177
[2025-11-25 23:30:10] 2025-11-25 22:30:10,250 [wrapper] Pilot exit status: 0
[2025-11-25 23:30:10] 2025-11-25 22:30:10,258 [wrapper] pandaids: 6896420952
[2025-11-25 23:30:10] 2025-11-25 22:30:10,274 [wrapper] cleanup supervisor_pilot 1979183 1979178
[2025-11-25 23:30:10] 2025-11-25 22:30:10,277 [wrapper] Test setup, not cleaning
[2025-11-25 23:30:10] 2025-11-25 22:30:10,280 [wrapper] apfmon messages muted
[2025-11-25 23:30:10] 2025-11-25 22:30:10,282 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:30:10] 2025-11-25 22:30:10,285 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:30:10]  *** Error codes and diagnostics ***
[2025-11-25 23:30:10]     "exeErrorCode": 65,
[2025-11-25 23:30:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 23:30:10]     "pilotErrorCode": 1305,
[2025-11-25 23:30:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 23:30:10]  *** Listing of results directory ***
[2025-11-25 23:30:10] total 405076
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc    576529 Nov 25 04:04 pilot3.tar.gz
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc      5112 Nov 25 04:17 queuedata.json
[2025-11-25 23:30:10] -rwx------ 1 boinc boinc     36292 Nov 25 04:20 runpilot2-wrapper.sh
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc       100 Nov 25 23:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:30:10] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 23:25 run_atlas
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc       105 Nov 25 23:25 job.xml
[2025-11-25 23:30:10] -rw-r--r-- 2 boinc boinc 410611290 Nov 25 23:25 EVNT.47483658._001485.pool.root.1
[2025-11-25 23:30:10] -rw-r--r-- 2 boinc boinc    590109 Nov 25 23:25 input.tar.gz
[2025-11-25 23:30:10] -rw-r--r-- 2 boinc boinc     15847 Nov 25 23:25 start_atlas.sh
[2025-11-25 23:30:10] drwxrwx--x 2 boinc boinc      4096 Nov 25 23:25 shared
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc         0 Nov 25 23:25 boinc_setup_complete
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc      6196 Nov 25 23:25 init_data.xml
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc         0 Nov 25 23:25 boinc_lockfile
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc      2786 Nov 25 23:25 pandaJob.out
[2025-11-25 23:30:10] -rw------- 1 boinc boinc    991877 Nov 25 23:26 agis_schedconf.cvmfs.json
[2025-11-25 23:30:10] -rw------- 1 boinc boinc   1516240 Nov 25 23:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:30:10] drwx------ 5 boinc boinc      4096 Nov 25 23:26 pilot3
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc       522 Nov 25 23:27 boinc_task_state.xml
[2025-11-25 23:30:10] -rw------- 1 boinc boinc       956 Nov 25 23:27 memory_monitor_summary.json
[2025-11-25 23:30:10] -rw------- 1 boinc boinc     55620 Nov 25 23:27 log.47556149._004714.job.log.tgz.1
[2025-11-25 23:30:10] -rw------- 1 boinc boinc        95 Nov 25 23:29 pilot_heartbeat.json
[2025-11-25 23:30:10] -rw------- 1 boinc boinc      8404 Nov 25 23:29 heartbeat.json
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc      8192 Nov 25 23:30 boinc_mmap_file
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc        22 Nov 25 23:30 wrapper_checkpoint.txt
[2025-11-25 23:30:10] -rw------- 1 boinc boinc      4752 Nov 25 23:30 pilotlog.txt
[2025-11-25 23:30:10] -rw------- 1 boinc boinc     93475 Nov 25 23:30 log.47556149._004714.job.log.1
[2025-11-25 23:30:10] -rw------- 1 boinc boinc       186 Nov 25 23:30 output.list
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc       620 Nov 25 23:30 runtime_log
[2025-11-25 23:30:10] -rw------- 1 boinc boinc    163840 Nov 25 23:30 result.tar.gz
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc      8744 Nov 25 23:30 runtime_log.err
[2025-11-25 23:30:10] -rw------- 1 boinc boinc       649 Nov 25 23:30 9OXNDmgmyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmt4LKDmNQalon.diag
[2025-11-25 23:30:10] -rw-r--r-- 1 boinc boinc      8236 Nov 25 23:30 stderr.txt
[2025-11-25 23:30:10] No HITS result produced
[2025-11-25 23:30:10]  *** Contents of shared directory: ***
[2025-11-25 23:30:10] total 401748
[2025-11-25 23:30:10] -rw-r--r-- 2 boinc boinc 410611290 Nov 25 23:25 ATLAS.root_0
[2025-11-25 23:30:10] -rw-r--r-- 2 boinc boinc    590109 Nov 25 23:25 input.tar.gz
[2025-11-25 23:30:10] -rw-r--r-- 2 boinc boinc     15847 Nov 25 23:25 start_atlas.sh
[2025-11-25 23:30:10] -rw------- 1 boinc boinc    163840 Nov 25 23:30 result.tar.gz
23:30:11 (1975444): run_atlas exited; CPU time 31.725750
23:30:11 (1975444): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN