Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:59:46 (2100511): wrapper (7.7.26015): starting
23:59:46 (2100511): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 23:59:46] Arguments: --nthreads 3
[2025-11-25 23:59:46] Threads: 3
[2025-11-25 23:59:46] Checking for CVMFS
[2025-11-25 23:59:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:59:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:59:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:59:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:59:47] 2.9.2.0 1308651 177 65800 153300 2 88 35417243 36864000 0 130560 0 2379083 99.999 9457 6678 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 23:59:47] CVMFS is ok
[2025-11-25 23:59:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:59:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:59:47] Further information can be found at the LHC@home message board.
[2025-11-25 23:59:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:59:47] Checking for apptainer binary...
[2025-11-25 23:59:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:59:47] Running /usr/bin/apptainer --version
[2025-11-25 23:59:47] apptainer version 1.4.1-1.1
[2025-11-25 23:59:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:59:47] thA335
[2025-11-25 23:59:47] apptainer works
[2025-11-25 23:59:47] Set ATHENA_PROC_NUMBER=3
[2025-11-25 23:59:47] Set ATHENA_CORE_NUMBER=3
[2025-11-25 23:59:47] Starting ATLAS job with PandaID=6896298633
[2025-11-25 23:59:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:04:04]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:04:04] 2025-11-25 23:03:24,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:04:04] 2025-11-25 23:03:25,476 | INFO     | all payload control threads have been joined
[2025-11-26 00:04:04] 2025-11-25 23:03:25,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:04:04] 2025-11-25 23:03:25,623 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:25,624 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:25,649 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:25,659 | INFO     | all data control threads have been joined
[2025-11-26 00:04:04] 2025-11-25 23:03:25,738 | INFO     | all job control threads have been joined
[2025-11-26 00:04:04] 2025-11-25 23:03:25,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,137 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,428 | INFO     | [job] validate thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,482 | INFO     | [payload] control thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,510 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,552 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,612 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,665 | INFO     | [data] control thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,717 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,744 | INFO     | [job] control thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,765 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:26,919 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:29,607 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:04:04] 2025-11-25 23:03:54,196 | INFO     | PID=2104257 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 00:04:04] 2025-11-25 23:03:54,196 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:04:04] 2025-11-25 23:03:54,196 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:04:04] 2025-11-25 23:03:54,196 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:04:04] 2025-11-25 23:03:59,159 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:04:04] 2025-11-25 23:03:59,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016209704768)>', '<ExcThread(monitor, started 140015707342592)>']
[2025-11-26 00:04:04] 2025-11-25 23:04:00,227 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:04:04] 2025-11-25 23:04:00,228 | INFO     | [monitor] control thread has ended
[2025-11-26 00:04:04] 2025-11-25 23:04:04,590 | INFO     | all workflow threads have been joined
[2025-11-26 00:04:04] 2025-11-25 23:04:04,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:04:04] 2025-11-25 23:04:04,592 | INFO     | traces error code: 0
[2025-11-26 00:04:04] 2025-11-25 23:04:04,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:04:04] 2025-11-25 23:04:04,638 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:04:04] 2025-11-25 23:04:04,641 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:04:04] 2025-11-25 23:04:04,644 [wrapper] pilotpid: 2104257
[2025-11-26 00:04:04] 2025-11-25 23:04:04,647 [wrapper] Pilot exit status: 0
[2025-11-26 00:04:04] 2025-11-25 23:04:04,654 [wrapper] pandaids: 6896298633
[2025-11-26 00:04:04] 2025-11-25 23:04:04,671 [wrapper] cleanup supervisor_pilot 2104263 2104258
[2025-11-26 00:04:04] 2025-11-25 23:04:04,674 [wrapper] Test setup, not cleaning
[2025-11-26 00:04:04] 2025-11-25 23:04:04,677 [wrapper] apfmon messages muted
[2025-11-26 00:04:04] 2025-11-25 23:04:04,680 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:04:04] 2025-11-25 23:04:04,682 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:04:04]  *** Error codes and diagnostics ***
[2025-11-26 00:04:04]     "exeErrorCode": 65,
[2025-11-26 00:04:04]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:04:04]     "pilotErrorCode": 1305,
[2025-11-26 00:04:04]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-26 00:04:04]  *** Listing of results directory ***
[2025-11-26 00:04:04] total 402876
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc    576529 Nov 25 03:13 pilot3.tar.gz
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc      5112 Nov 25 03:47 queuedata.json
[2025-11-26 00:04:04] -rwx------ 1 boinc boinc     36292 Nov 25 03:48 runpilot2-wrapper.sh
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc       100 Nov 25 23:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:04:04] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 23:59 run_atlas
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc       105 Nov 25 23:59 job.xml
[2025-11-26 00:04:04] -rw-r--r-- 2 boinc boinc 408338531 Nov 25 23:59 EVNT.47483658._001481.pool.root.1
[2025-11-26 00:04:04] -rw-r--r-- 2 boinc boinc    590101 Nov 25 23:59 input.tar.gz
[2025-11-26 00:04:04] -rw-r--r-- 2 boinc boinc     15847 Nov 25 23:59 start_atlas.sh
[2025-11-26 00:04:04] drwxrwx--x 2 boinc boinc      4096 Nov 25 23:59 shared
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc         0 Nov 25 23:59 boinc_setup_complete
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc      6196 Nov 25 23:59 init_data.xml
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc         0 Nov 25 23:59 boinc_lockfile
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc      2785 Nov 25 23:59 pandaJob.out
[2025-11-26 00:04:04] -rw------- 1 boinc boinc    991877 Nov 25 23:59 agis_schedconf.cvmfs.json
[2025-11-26 00:04:04] -rw------- 1 boinc boinc   1516240 Nov 25 23:59 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:04:04] drwx------ 5 boinc boinc      4096 Nov 25 23:59 pilot3
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc       523 Nov 26 00:01 boinc_task_state.xml
[2025-11-26 00:04:04] -rw------- 1 boinc boinc       957 Nov 26 00:01 memory_monitor_summary.json
[2025-11-26 00:04:04] -rw------- 1 boinc boinc     55655 Nov 26 00:01 log.47556149._004674.job.log.tgz.1
[2025-11-26 00:04:04] -rw------- 1 boinc boinc        95 Nov 26 00:02 pilot_heartbeat.json
[2025-11-26 00:04:04] -rw------- 1 boinc boinc      8403 Nov 26 00:03 heartbeat.json
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc      8192 Nov 26 00:04 boinc_mmap_file
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc        23 Nov 26 00:04 wrapper_checkpoint.txt
[2025-11-26 00:04:04] -rw------- 1 boinc boinc      4938 Nov 26 00:04 pilotlog.txt
[2025-11-26 00:04:04] -rw------- 1 boinc boinc     94356 Nov 26 00:04 log.47556149._004674.job.log.1
[2025-11-26 00:04:04] -rw------- 1 boinc boinc       186 Nov 26 00:04 output.list
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc       620 Nov 26 00:04 runtime_log
[2025-11-26 00:04:04] -rw------- 1 boinc boinc    174080 Nov 26 00:04 result.tar.gz
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc      8744 Nov 26 00:04 runtime_log.err
[2025-11-26 00:04:04] -rw------- 1 boinc boinc       649 Nov 26 00:04 pXANDmaHyh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmHJKDmINQ7im.diag
[2025-11-26 00:04:04] -rw-r--r-- 1 boinc boinc      7239 Nov 26 00:04 stderr.txt
[2025-11-26 00:04:04] No HITS result produced
[2025-11-26 00:04:04]  *** Contents of shared directory: ***
[2025-11-26 00:04:04] total 399544
[2025-11-26 00:04:04] -rw-r--r-- 2 boinc boinc 408338531 Nov 25 23:59 ATLAS.root_0
[2025-11-26 00:04:04] -rw-r--r-- 2 boinc boinc    590101 Nov 25 23:59 input.tar.gz
[2025-11-26 00:04:04] -rw-r--r-- 2 boinc boinc     15847 Nov 25 23:59 start_atlas.sh
[2025-11-26 00:04:04] -rw------- 1 boinc boinc    174080 Nov 26 00:04 result.tar.gz
00:04:06 (2100511): run_atlas exited; CPU time 31.610216
00:04:06 (2100511): called boinc_finish(0)

</stderr_txt>
]]>

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