Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:51:16 (818851): wrapper (7.7.26015): starting
18:51:16 (818851): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:51:16] Arguments: --nthreads 8
[2025-11-25 18:51:16] Threads: 8
[2025-11-25 18:51:16] Checking for CVMFS
[2025-11-25 18:51:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:51:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:51:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:51:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:51:18] 2.13.3.0 13172 29294 398248 153302 2 441 30055935 32935937 42143 16776704 0 151635966 99.540 166996610 35009 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:51:18] CVMFS is ok
[2025-11-25 18:51:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:51:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:51:18] Further information can be found at the LHC@home message board.
[2025-11-25 18:51:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:51:18] Checking for apptainer binary...
[2025-11-25 18:51:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:51:18] Running /usr/bin/apptainer --version
[2025-11-25 18:51:18] apptainer version 1.4.4-1.el9
[2025-11-25 18:51:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:51:18] c6-6-8-3.aglt2.org
[2025-11-25 18:51:18] apptainer works
[2025-11-25 18:51:19] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:51:19] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:51:19] Starting ATLAS job with PandaID=6896420895
[2025-11-25 18:51:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:20:45 (1728668): wrapper (7.7.26015): starting
13:20:45 (1728668): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:20:45] Arguments: --nthreads 8
[2025-11-26 13:20:45] Threads: 8
[2025-11-26 13:20:45] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:20:45] Checking for CVMFS
[2025-11-26 13:20:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:20:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:20:45] 2.13.3.0 13172 30403 374404 153331 3 439 24192179 32935937 35383 16776704 0 159168469 99.541 174462204 34908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:20:45] CVMFS is ok
[2025-11-26 13:20:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:20:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:20:45] Further information can be found at the LHC@home message board.
[2025-11-26 13:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:20:45] Checking for apptainer binary...
[2025-11-26 13:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:20:45] Running /usr/bin/apptainer --version
[2025-11-26 13:20:45] apptainer version 1.4.4-1.el9
[2025-11-26 13:20:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:20:46] c6-6-8-3.aglt2.org
[2025-11-26 13:20:46] apptainer works
[2025-11-26 13:20:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:20:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:20:46] Starting ATLAS job with PandaID=6896420895
[2025-11-26 13:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:13:26]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:13:26] 2025-11-27 15:12:40,134 | INFO     | time since job start (75101s) is within the limit (172800.0s)
[2025-11-27 10:13:26] 2025-11-27 15:12:40,884 | INFO     | monitor loop #4081: job 0:6896420895 is in state 'finished'
[2025-11-27 10:13:26] 2025-11-27 15:12:40,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:13:26] 2025-11-27 15:12:42,141 | INFO     | time since job start (75103s) is within the limit (172800.0s)
[2025-11-27 10:13:26] 2025-11-27 15:12:43,389 | INFO     | monitor loop #4082: job 0:6896420895 is in state 'finished'
[2025-11-27 10:13:26] 2025-11-27 15:12:43,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:13:26] 2025-11-27 15:12:44,147 | INFO     | time since job start (75105s) is within the limit (172800.0s)
[2025-11-27 10:13:26] 2025-11-27 15:12:45,894 | INFO     | monitor loop #4083: job 0:6896420895 is in state 'finished'
[2025-11-27 10:13:26] 2025-11-27 15:12:45,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:13:26] 2025-11-27 15:12:46,154 | INFO     | time since job start (75107s) is within the limit (172800.0s)
[2025-11-27 10:13:26] 2025-11-27 15:12:48,161 | INFO     | time since job start (75109s) is within the limit (172800.0s)
[2025-11-27 10:13:26] 2025-11-27 15:12:48,399 | INFO     | monitor loop #4084: job 0:6896420895 is in state 'finished'
[2025-11-27 10:13:26] 2025-11-27 15:12:48,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:13:26] 2025-11-27 15:12:50,911 | INFO     | monitor loop #4085: job 0:6896420895 is in state 'finished'
[2025-11-27 10:13:26] 2025-11-27 15:12:50,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:13:26] 2025-11-27 15:12:51,358 | INFO     | PID=1750958 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:13:26] 2025-11-27 15:12:51,358 | INFO     | .. there are 54 such processes running
[2025-11-27 10:13:26] 2025-11-27 15:12:51,379 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:13:26] 2025-11-27 15:12:51,428 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2621.0748541666667
[2025-11-27 10:13:26] 2025-11-27 15:12:51,482 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896420895/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:13:26] 2025-11-27 15:12:51,483 | INFO     | extracted standard info from prmon json
[2025-11-27 10:13:26] 2025-11-27 15:12:51,483 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:13:26] 2025-11-27 15:12:51,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:13:26] 2025-11-27 15:12:51,529 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:13:26] 2025-11-27 15:12:51,531 | INFO     | sum of square deviations: 578428254434.7438
[2025-11-27 10:13:26] 2025-11-27 15:12:51,594 | INFO     | sum of deviations: 1985617611552.9785
[2025-11-27 10:13:26] 2025-11-27 15:12:51,594 | INFO     | mean x: 1764218807.4362307
[2025-11-27 10:13:26] 2025-11-27 15:12:51,594 | INFO     | mean y: 2912331.1844029245
[2025-11-27 10:13:26] 2025-11-27 15:12:51,594 | INFO     | intersect: -6053264744.919295
[2025-11-27 10:13:26] 2025-11-27 15:12:51,596 | INFO     | chi2: 16.15883116695169
[2025-11-27 10:13:26] 2025-11-27 15:12:51,601 | INFO     | sum of square deviations: 571409437482.4471
[2025-11-27 10:13:26] 2025-11-27 15:12:51,664 | INFO     | sum of deviations: 2434864113957.693
[2025-11-27 10:13:26] 2025-11-27 15:12:51,665 | INFO     | mean x: 1764218654.9461663
[2025-11-27 10:13:26] 2025-11-27 15:12:51,665 | INFO     | mean y: 2922089.328711256
[2025-11-27 10:13:26] 2025-11-27 15:12:51,665 | INFO     | intersect: -7514686844.519333
[2025-11-27 10:13:26] 2025-11-27 15:12:51,667 | INFO     | chi2: 12.37831435053689
[2025-11-27 10:13:26] 2025-11-27 15:12:51,667 | INFO     | current chi2=12.37831435053689 (change=23.395979432886058 %)
[2025-11-27 10:13:26] 2025-11-27 15:12:51,667 | INFO     | right removable region: 1225
[2025-11-27 10:13:26] 2025-11-27 15:12:51,673 | INFO     | sum of square deviations: 571407682943.335
[2025-11-27 10:13:26] 2025-11-27 15:12:51,771 | INFO     | sum of deviations: 1638967532817.5923
[2025-11-27 10:13:26] 2025-11-27 15:12:51,771 | INFO     | mean x: 1764218959.9453506
[2025-11-27 10:13:26] 2025-11-27 15:12:51,771 | INFO     | mean y: 2919854.3670473085
[2025-11-27 10:13:26] 2025-11-27 15:12:51,772 | INFO     | intersect: -5057385917.577557
[2025-11-27 10:13:26] 2025-11-27 15:12:51,773 | INFO     | chi2: 13.968040237950891
[2025-11-27 10:13:26] 2025-11-27 15:12:51,773 | INFO     | current chi2=13.968040237950891 (change=13.557855183742745 %)
[2025-11-27 10:13:26] 2025-11-27 15:12:51,773 | INFO     | left removable region: 10
[2025-11-27 10:13:26] 2025-11-27 15:12:51,775 | INFO     | sum of square deviations: 556165673265.6514
[2025-11-27 10:13:26] 2025-11-27 15:12:51,847 | INFO     | sum of deviations: 2051832720837.5286
[2025-11-27 10:13:26] 2025-11-27 15:12:51,848 | INFO     | mean x: 1764218929.4584363
[2025-11-27 10:13:26] 2025-11-27 15:12:51,848 | INFO     | mean y: 2933817.446090535
[2025-11-27 10:13:26] 2025-11-27 15:12:51,848 | INFO     | intersect: -6505706143.968331
[2025-11-27 10:13:26] 2025-11-27 15:12:51,853 | INFO     | chi2: 9.50859539173846
[2025-11-27 10:13:26] 2025-11-27 15:12:51,854 | INFO     | current memory leak: 3.69 B/s (using 1215 data points, chi2=9.51)
[2025-11-27 10:13:26] 2025-11-27 15:12:51,855 | INFO     | could have reported an average CPU frequency of 2664 MHz (44 samples)
[2025-11-27 10:13:26] 2025-11-27 15:12:51,855 | INFO     | ..............................
[2025-11-27 10:13:26] 2025-11-27 15:12:51,855 | INFO     | . Timing measurements:
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . get job = 0 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . initial setup = 2 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . payload setup = 7 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . stage-in = 0 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . payload execution = 75042 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . stage-out = 7 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | . log creation = 1 s
[2025-11-27 10:13:26] 2025-11-27 15:12:51,856 | INFO     | ..............................
[2025-11-27 10:13:26] 2025-11-27 15:12:52,188 | INFO     | 
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | job summary report
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | --------------------------------------------------
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | PanDA job id: 6896420895
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | task id: 47556149
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | errors: (none)
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | pilot state: finished 
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | transexitcode: 0
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | exeerrorcode: 0
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | exeerrordiag: 
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | exitcode: 0
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | exitmsg: OK
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | cpuconsumptiontime: 251948 s
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | nevents: 1000
[2025-11-27 10:13:26] 2025-11-27 15:12:52,189 | INFO     | neventsw: 0
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | pid: 1791086
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | pgrp: 1791086
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | corecount: 8
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | event service: False
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 75050: 2343600, 75051: 2343599, 75059: 2352649, 75062: 2352833, 75096: 2353079}
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | --------------------------------------------------
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | 
[2025-11-27 10:13:26] 2025-11-27 15:12:52,190 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 10:13:26] 2025-11-27 15:12:52,284 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,285 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:13:26] 2025-11-27 15:12:52,286 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,287 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:13:26] 2025-11-27 15:12:52,287 | INFO     | job 6896420895 has completed (purged errors)
[2025-11-27 10:13:26] 2025-11-27 15:12:52,287 | INFO     | overall cleanup function is called
[2025-11-27 10:13:26] 2025-11-27 15:12:53,306 | INFO     | --- collectZombieJob: --- 10, [1791086]
[2025-11-27 10:13:26] 2025-11-27 15:12:53,307 | INFO     | zombie collector waiting for pid 1791086
[2025-11-27 10:13:26] 2025-11-27 15:12:53,307 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:13:26] 2025-11-27 15:12:53,307 | INFO     | collected zombie processes
[2025-11-27 10:13:26] 2025-11-27 15:12:53,307 | INFO     | will attempt to kill all subprocesses of pid=1791086
[2025-11-27 10:13:26] 2025-11-27 15:12:54,958 | INFO     | process IDs to be killed: [1791086] (in reverse order)
[2025-11-27 10:13:26] 2025-11-27 15:12:55,477 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:13:26] 2025-11-27 15:12:55,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:13:26] 2025-11-27 15:12:55,528 | INFO     | did not find any defunct processes belonging to 1791086
[2025-11-27 10:13:26] 2025-11-27 15:12:55,554 | INFO     | did not find any defunct processes belonging to 1791086
[2025-11-27 10:13:26] 2025-11-27 15:12:55,592 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:13:26] 2025-11-27 15:12:55,593 | INFO     | ready for new job
[2025-11-27 10:13:26] 2025-11-27 15:12:55,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:13:26] 2025-11-27 15:12:55,611 | INFO     | ***************************************
[2025-11-27 10:13:26] 2025-11-27 15:12:55,611 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:13:26] 2025-11-27 15:12:55,612 | INFO     | ***************************************
[2025-11-27 10:13:26] 2025-11-27 15:12:55,612 | INFO     | 
[2025-11-27 10:13:26] 2025-11-27 15:12:55,621 | INFO     | architecture information:
[2025-11-27 10:13:26] 2025-11-27 15:12:55,637 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:13:26] 2025-11-27 15:12:55,661 | INFO     | cat /etc/os-release:
[2025-11-27 10:13:26] NAME="CentOS Linux"
[2025-11-27 10:13:26] VERSION="7 (Core)"
[2025-11-27 10:13:26] ID="centos"
[2025-11-27 10:13:26] ID_LIKE="rhel fedora"
[2025-11-27 10:13:26] VERSION_ID="7"
[2025-11-27 10:13:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:13:26] ANSI_COLOR="0;31"
[2025-11-27 10:13:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:13:26] HOME_URL="https://www.centos.org/"
[2025-11-27 10:13:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:13:26] 
[2025-11-27 10:13:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:13:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:13:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:13:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:13:26] 
[2025-11-27 10:13:26] 2025-11-27 15:12:55,662 | INFO     | ***************************************
[2025-11-27 10:13:26] 2025-11-27 15:12:56,165 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 10:13:26] 2025-11-27 15:12:56,228 | INFO     | sufficient remaining disk space (86054535168 B)
[2025-11-27 10:13:26] 2025-11-27 15:12:56,228 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:13:26] 2025-11-27 15:12:56,228 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:13:26] 2025-11-27 15:12:56,228 | INFO     | update_server=False
[2025-11-27 10:13:26] 2025-11-27 15:12:56,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:13:26] 2025-11-27 15:12:56,229 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:13:26] 2025-11-27 15:12:56,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:13:26] 2025-11-27 15:12:57,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:13:26] 2025-11-27 15:12:57,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:13:26] 2025-11-27 15:12:57,025 | INFO     | aborting loop
[2025-11-27 10:13:26] 2025-11-27 15:12:57,167 | INFO     | all payload control threads have been joined
[2025-11-27 10:13:26] 2025-11-27 15:12:57,234 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:57,236 | INFO     | all data control threads have been joined
[2025-11-27 10:13:26] 2025-11-27 15:12:57,315 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:57,360 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:57,410 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:57,411 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:57,683 | INFO     | all job control threads have been joined
[2025-11-27 10:13:26] 2025-11-27 15:12:57,992 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,027 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,030 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,173 | INFO     | [payload] control thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,235 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,242 | INFO     | [data] control thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,366 | INFO     | [job] validate thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,595 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,596 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:12:58,701 | INFO     | [job] control thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:13:00,236 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:13:26] 2025-11-27 15:13:17,409 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:13:26] 2025-11-27 15:13:17,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139645965358912)>', '<ExcThread(monitor, started 139645459347200)>']
[2025-11-27 10:13:26] 2025-11-27 15:13:22,790 | INFO     | all workflow threads have been joined
[2025-11-27 10:13:26] 2025-11-27 15:13:22,792 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:13:26] 2025-11-27 15:13:22,793 | INFO     | traces error code: 0
[2025-11-27 10:13:26] 2025-11-27 15:13:22,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:13:26] 2025-11-27 15:13:24,891 | INFO     | PID=1750958 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:13:26] 2025-11-27 15:13:24,892 | INFO     | .. there are 54 such processes running
[2025-11-27 10:13:26] 2025-11-27 15:13:24,892 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:13:26] 2025-11-27 15:13:24,892 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:13:26] 2025-11-27 15:13:24,892 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:13:26] 2025-11-27 15:13:24,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:13:26] 2025-11-27 15:13:24,892 | INFO     | [monitor] control thread has ended
[2025-11-27 10:13:26] 2025-11-27 15:13:25,360 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:13:26] 2025-11-27 15:13:25,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:13:26] 2025-11-27 15:13:25,401 [wrapper] pilotpid: 1750958
[2025-11-27 10:13:26] 2025-11-27 15:13:25,420 [wrapper] Pilot exit status: 0
[2025-11-27 10:13:26] 2025-11-27 15:13:25,534 [wrapper] pandaids: 6896420895 6896420895
[2025-11-27 10:13:26] 2025-11-27 15:13:26,162 [wrapper] cleanup supervisor_pilot 3574829 1750959
[2025-11-27 10:13:26] 2025-11-27 15:13:26,174 [wrapper] Test setup, not cleaning
[2025-11-27 10:13:26] 2025-11-27 15:13:26,224 [wrapper] apfmon messages muted
[2025-11-27 10:13:26] 2025-11-27 15:13:26,246 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:13:26] 2025-11-27 15:13:26,294 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:13:26]  *** Error codes and diagnostics ***
[2025-11-27 10:13:26]     "exeErrorCode": 0,
[2025-11-27 10:13:26]     "exeErrorDiag": "",
[2025-11-27 10:13:26]     "pilotErrorCode": 0,
[2025-11-27 10:13:26]     "pilotErrorDiag": "",
[2025-11-27 10:13:26]  *** Listing of results directory ***
[2025-11-27 10:13:26] total 1718408
[2025-11-27 10:13:26] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 21:13 pilot3.tar.gz
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 21:51 queuedata.json
[2025-11-27 10:13:26] -rwx------. 1 boincer umatlas     36292 Nov 24 21:53 runpilot2-wrapper.sh
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:13:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:51 run_atlas
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:51 job.xml
[2025-11-27 10:13:26] -rw-r--r--. 3 boincer umatlas 408308900 Nov 25 18:51 EVNT.47483658._001483.pool.root.1
[2025-11-27 10:13:26] -rw-r--r--. 3 boincer umatlas 408308900 Nov 25 18:51 ATLAS.root_0
[2025-11-27 10:13:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:51 start_atlas.sh
[2025-11-27 10:13:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:51 shared
[2025-11-27 10:13:26] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 18:51 input.tar.gz
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:51 boinc_lockfile
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 13:20 pandaJob.out
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas        57 Nov 26 13:20 setup.sh.local
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas    991522 Nov 26 13:20 agis_schedconf.cvmfs.json
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas       534 Nov 27 09:43 boinc_task_state.xml
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas 916704401 Nov 27 10:10 HITS.47556149._004696.pool.root.1
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 10:11 init_data.xml
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas      1082 Nov 27 10:12 memory_monitor_summary.json
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas   2272368 Nov 27 10:12 log.47556149._004696.job.log.tgz.1
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas        95 Nov 27 10:12 pilot_heartbeat.json
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas      8631 Nov 27 10:12 heartbeat.json
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:13 boinc_mmap_file
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas        30 Nov 27 10:13 wrapper_checkpoint.txt
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas       823 Nov 27 10:13 pilotlog.txt
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas   8932485 Nov 27 10:13 log.47556149._004696.job.log.1
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas       353 Nov 27 10:13 output.list
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:13 runtime_log
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas  11223040 Nov 27 10:13 result.tar.gz
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 10:13 runtime_log.err
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas       789 Nov 27 10:13 CgxKDmhMyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmL4LKDmEYqTRm.diag
[2025-11-27 10:13:26] -rw-r--r--. 1 boincer umatlas     24020 Nov 27 10:13 stderr.txt
[2025-11-27 10:13:26] HITS file was successfully produced:
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas 916704401 Nov 27 10:10 shared/HITS.pool.root.1
[2025-11-27 10:13:26]  *** Contents of shared directory: ***
[2025-11-27 10:13:26] total 1305524
[2025-11-27 10:13:26] -rw-r--r--. 3 boincer umatlas 408308900 Nov 25 18:51 ATLAS.root_0
[2025-11-27 10:13:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:51 start_atlas.sh
[2025-11-27 10:13:26] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 18:51 input.tar.gz
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas 916704401 Nov 27 10:10 HITS.pool.root.1
[2025-11-27 10:13:26] -rw-------. 1 boincer umatlas  11223040 Nov 27 10:13 result.tar.gz
10:13:28 (1728668): run_atlas exited; CPU time 254963.534655
10:13:28 (1728668): called boinc_finish(0)

</stderr_txt>
]]>

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