Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:33:26 (95521): wrapper (7.7.26015): starting
22:33:26 (95521): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 22:33:26] Arguments: --nthreads 9
[2025-11-25 22:33:26] Threads: 9
[2025-11-25 22:33:26] Checking for CVMFS
[2025-11-25 22:33:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:33:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:33:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:33:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:33:48] 2.13.2.0 6892 36180 173952 153307 1 345 26976180 40960000 18988 16776704 0 96544563 99.744 58295039 35544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 22:33:48] CVMFS is ok
[2025-11-25 22:33:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:33:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:33:48] Further information can be found at the LHC@home message board.
[2025-11-25 22:33:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:33:48] Checking for apptainer binary...
[2025-11-25 22:33:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:33:48] Running /usr/bin/apptainer --version
[2025-11-25 22:33:48] apptainer version 1.4.4-1.el9
[2025-11-25 22:33:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:33:49] c-212-5.aglt2.org
[2025-11-25 22:33:49] apptainer works
[2025-11-25 22:33:49] Set ATHENA_PROC_NUMBER=9
[2025-11-25 22:33:49] Set ATHENA_CORE_NUMBER=9
[2025-11-25 22:33:49] Starting ATLAS job with PandaID=6894238296
[2025-11-25 22:33:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:40:25]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:40:25] 2025-11-26 17:39:10,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:40:25] 2025-11-26 17:39:11,283 | INFO     | time since job start (50668s) is within the limit (172800.0s)
[2025-11-26 12:40:25] 2025-11-26 17:39:13,290 | INFO     | time since job start (50670s) is within the limit (172800.0s)
[2025-11-26 12:40:25] 2025-11-26 17:39:13,438 | INFO     | monitor loop #2858: job 0:6894238296 is in state 'finished'
[2025-11-26 12:40:25] 2025-11-26 17:39:13,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 12:40:25] 2025-11-26 17:39:14,634 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 12:40:25] 2025-11-26 17:39:14,655 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2988.409729166667
[2025-11-26 12:40:25] 2025-11-26 17:39:14,729 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6894238296/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:40:25] 2025-11-26 17:39:14,729 | INFO     | extracted standard info from prmon json
[2025-11-26 12:40:25] 2025-11-26 17:39:14,729 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:40:25] 2025-11-26 17:39:14,729 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:40:25] 2025-11-26 17:39:14,737 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 12:40:25] 2025-11-26 17:39:14,737 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 12:40:25] 2025-11-26 17:39:14,780 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:40:25] 2025-11-26 17:39:14,892 | INFO     | sum of square deviations: 176017618144.9963
[2025-11-26 12:40:25] 2025-11-26 17:39:15,166 | INFO     | sum of deviations: 1071478696978.6371
[2025-11-26 12:40:25] 2025-11-26 17:39:15,166 | INFO     | mean x: 1764153431.7198067
[2025-11-26 12:40:25] 2025-11-26 17:39:15,166 | INFO     | mean y: 2600049.9855072466
[2025-11-26 12:40:25] 2025-11-26 17:39:15,166 | INFO     | intersect: -10736397785.631233
[2025-11-26 12:40:25] 2025-11-26 17:39:15,167 | INFO     | chi2: 3.9816823110433446
[2025-11-26 12:40:25] 2025-11-26 17:39:15,168 | INFO     | sum of square deviations: 172848070039.75204
[2025-11-26 12:40:25] 2025-11-26 17:39:15,254 | INFO     | sum of deviations: 1116775335870.6765
[2025-11-26 12:40:25] 2025-11-26 17:39:15,254 | INFO     | mean x: 1764153279.221142
[2025-11-26 12:40:25] 2025-11-26 17:39:15,254 | INFO     | mean y: 2602216.2600243012
[2025-11-26 12:40:25] 2025-11-26 17:39:15,254 | INFO     | intersect: -11395632490.534464
[2025-11-26 12:40:25] 2025-11-26 17:39:15,255 | INFO     | chi2: 3.2872246631869144
[2025-11-26 12:40:25] 2025-11-26 17:39:15,255 | INFO     | current chi2=3.2872246631869144 (change=17.441312329974842 %)
[2025-11-26 12:40:25] 2025-11-26 17:39:15,255 | INFO     | right removable region: 822
[2025-11-26 12:40:25] 2025-11-26 17:39:15,256 | INFO     | sum of square deviations: 172847959019.75204
[2025-11-26 12:40:25] 2025-11-26 17:39:15,324 | INFO     | time since job start (50672s) is within the limit (172800.0s)
[2025-11-26 12:40:25] 2025-11-26 17:39:15,332 | INFO     | sum of deviations: 847046106721.5192
[2025-11-26 12:40:25] 2025-11-26 17:39:15,332 | INFO     | mean x: 1764153584.221142
[2025-11-26 12:40:25] 2025-11-26 17:39:15,332 | INFO     | mean y: 2610835.958687728
[2025-11-26 12:40:25] 2025-11-26 17:39:15,333 | INFO     | intersect: -8642671605.603554
[2025-11-26 12:40:25] 2025-11-26 17:39:15,333 | INFO     | chi2: 1.424496295930524
[2025-11-26 12:40:25] 2025-11-26 17:39:15,334 | INFO     | current chi2=1.424496295930524 (change=64.22375808387247 %)
[2025-11-26 12:40:25] 2025-11-26 17:39:15,334 | INFO     | sum of square deviations: 169716579682.00592
[2025-11-26 12:40:25] 2025-11-26 17:39:15,373 | INFO     | sum of deviations: 792604145806.3267
[2025-11-26 12:40:25] 2025-11-26 17:39:15,374 | INFO     | mean x: 1764153736.722494
[2025-11-26 12:40:25] 2025-11-26 17:39:15,374 | INFO     | mean y: 2613484.7811735943
[2025-11-26 12:40:25] 2025-11-26 17:39:15,374 | INFO     | intersect: -8236272593.325565
[2025-11-26 12:40:25] 2025-11-26 17:39:15,375 | INFO     | chi2: 1.3293717401046306
[2025-11-26 12:40:25] 2025-11-26 17:39:15,375 | INFO     | current chi2=1.3293717401046306 (change=6.6777678606566875 %)
[2025-11-26 12:40:25] 2025-11-26 17:39:15,375 | INFO     | left removable region: 20
[2025-11-26 12:40:25] 2025-11-26 17:39:15,384 | INFO     | sum of square deviations: 159950880023.65094
[2025-11-26 12:40:25] 2025-11-26 17:39:15,422 | INFO     | sum of deviations: 743313098921.0674
[2025-11-26 12:40:25] 2025-11-26 17:39:15,429 | INFO     | mean x: 1764153858.7256858
[2025-11-26 12:40:25] 2025-11-26 17:39:15,430 | INFO     | mean y: 2620393.1957605984
[2025-11-26 12:40:25] 2025-11-26 17:39:15,430 | INFO     | intersect: -8195638169.114444
[2025-11-26 12:40:25] 2025-11-26 17:39:15,431 | INFO     | chi2: 0.5152465723323035
[2025-11-26 12:40:25] 2025-11-26 17:39:15,431 | INFO     | current memory leak: 4.65 B/s (using 802 data points, chi2=0.52)
[2025-11-26 12:40:25] 2025-11-26 17:39:15,432 | INFO     | could have reported an average CPU frequency of 3087 MHz (31 samples)
[2025-11-26 12:40:25] 2025-11-26 17:39:15,432 | INFO     | ..............................
[2025-11-26 12:40:25] 2025-11-26 17:39:15,432 | INFO     | . Timing measurements:
[2025-11-26 12:40:25] 2025-11-26 17:39:15,432 | INFO     | . get job = 0 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,432 | INFO     | . initial setup = 6 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,433 | INFO     | . payload setup = 44 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,433 | INFO     | . stage-in = 0 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,433 | INFO     | . payload execution = 50527 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,433 | INFO     | . stage-out = 10 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,433 | INFO     | . log creation = 2 s
[2025-11-26 12:40:25] 2025-11-26 17:39:15,433 | INFO     | ..............................
[2025-11-26 12:40:25] 2025-11-26 17:39:16,236 | INFO     | 
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | job summary report
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | --------------------------------------------------
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | PanDA job id: 6894238296
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | task id: 47523675
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | errors: (none)
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | pilot state: finished 
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | transexitcode: 0
[2025-11-26 12:40:25] 2025-11-26 17:39:16,237 | INFO     | exeerrorcode: 0
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | exeerrordiag: 
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | exitcode: 0
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | exitmsg: OK
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | cpuconsumptiontime: 112359 s
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | nevents: 400
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | neventsw: 0
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | pid: 108801
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | pgrp: 108801
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | corecount: 9
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | event service: False
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | sizes: {0: 2283774, 1: 2283802, 2: 2284001, 3: 2284001, 14: 2284029, 22: 2284319, 24: 2284475, 50573: 2331841, 50574: 2331840, 50586: 2340894, 50587: 2340950, 5061
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | --------------------------------------------------
[2025-11-26 12:40:25] 2025-11-26 17:39:16,238 | INFO     | 
[2025-11-26 12:40:25] 2025-11-26 17:39:16,239 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 12:40:25] 2025-11-26 17:39:16,315 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,315 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,316 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | job 6894238296 has completed (purged errors)
[2025-11-26 12:40:25] 2025-11-26 17:39:16,317 | INFO     | overall cleanup function is called
[2025-11-26 12:40:25] 2025-11-26 17:39:17,335 | INFO     | --- collectZombieJob: --- 10, [108801]
[2025-11-26 12:40:25] 2025-11-26 17:39:17,335 | INFO     | zombie collector waiting for pid 108801
[2025-11-26 12:40:25] 2025-11-26 17:39:17,335 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:40:25] 2025-11-26 17:39:17,335 | INFO     | collected zombie processes
[2025-11-26 12:40:25] 2025-11-26 17:39:17,335 | INFO     | will attempt to kill all subprocesses of pid=108801
[2025-11-26 12:40:25] 2025-11-26 17:39:19,092 | INFO     | process IDs to be killed: [108801] (in reverse order)
[2025-11-26 12:40:25] 2025-11-26 17:39:19,800 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:40:25] 2025-11-26 17:39:19,801 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:40:25] 2025-11-26 17:39:19,876 | INFO     | did not find any defunct processes belonging to 108801
[2025-11-26 12:40:25] 2025-11-26 17:39:19,982 | INFO     | did not find any defunct processes belonging to 108801
[2025-11-26 12:40:25] 2025-11-26 17:39:20,024 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:40:25] 2025-11-26 17:39:20,025 | INFO     | ready for new job
[2025-11-26 12:40:25] 2025-11-26 17:39:20,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:40:25] 2025-11-26 17:39:20,077 | INFO     | ***************************************
[2025-11-26 12:40:25] 2025-11-26 17:39:20,077 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:40:25] 2025-11-26 17:39:20,077 | INFO     | ***************************************
[2025-11-26 12:40:25] 2025-11-26 17:39:20,077 | INFO     | 
[2025-11-26 12:40:25] 2025-11-26 17:39:20,218 | INFO     | architecture information:
[2025-11-26 12:40:25] 2025-11-26 17:39:20,315 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:40:25] 2025-11-26 17:39:20,448 | INFO     | cat /etc/os-release:
[2025-11-26 12:40:25] NAME="CentOS Linux"
[2025-11-26 12:40:25] VERSION="7 (Core)"
[2025-11-26 12:40:25] ID="centos"
[2025-11-26 12:40:25] ID_LIKE="rhel fedora"
[2025-11-26 12:40:25] VERSION_ID="7"
[2025-11-26 12:40:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:40:25] ANSI_COLOR="0;31"
[2025-11-26 12:40:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:40:25] HOME_URL="https://www.centos.org/"
[2025-11-26 12:40:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:40:25] 
[2025-11-26 12:40:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:40:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:40:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:40:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:40:25] 
[2025-11-26 12:40:25] 2025-11-26 17:39:20,448 | INFO     | ***************************************
[2025-11-26 12:40:25] 2025-11-26 17:39:20,952 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 12:40:25] 2025-11-26 17:39:21,019 | INFO     | sufficient remaining disk space (122085703680 B)
[2025-11-26 12:40:25] 2025-11-26 17:39:21,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:40:25] 2025-11-26 17:39:21,019 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:40:25] 2025-11-26 17:39:21,019 | INFO     | update_server=False
[2025-11-26 12:40:25] 2025-11-26 17:39:21,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:40:25] 2025-11-26 17:39:21,113 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 12:40:25] 2025-11-26 17:39:21,113 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 12:40:25] 2025-11-26 17:39:21,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:40:25] 2025-11-26 17:39:21,113 | INFO     | will abort loop
[2025-11-26 12:40:25] 2025-11-26 17:39:21,118 | INFO     | all data control threads have been joined
[2025-11-26 12:40:25] 2025-11-26 17:39:21,133 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:40:25] 2025-11-26 17:39:21,271 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:40:25] 2025-11-26 17:39:21,930 | INFO     | all payload control threads have been joined
[2025-11-26 12:40:25] 2025-11-26 17:39:22,037 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,123 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,123 | INFO     | [data] control thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,155 | INFO     | all job control threads have been joined
[2025-11-26 12:40:25] 2025-11-26 17:39:22,278 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,321 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,347 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,448 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,569 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:22,956 | INFO     | [payload] control thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,100 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,151 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,180 | INFO     | [job] control thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,181 | INFO     | [job] validate thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,196 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,560 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:23,969 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:40:25] 2025-11-26 17:39:27,989 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:40:25] 2025-11-26 17:39:53,453 | INFO     | PID=100382 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 12:40:25] 2025-11-26 17:39:53,471 | INFO     | .. there are 18 such processes running
[2025-11-26 12:40:25] 2025-11-26 17:39:53,471 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:40:25] 2025-11-26 17:39:53,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:40:25] 2025-11-26 17:39:53,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:40:25] 2025-11-26 17:40:14,829 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:40:25] 2025-11-26 17:40:16,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140716109924160)>', '<ExcThread(monitor, started 140715459860224)>']
[2025-11-26 12:40:25] 2025-11-26 17:40:17,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:40:25] 2025-11-26 17:40:17,732 | INFO     | [monitor] control thread has ended
[2025-11-26 12:40:25] 2025-11-26 17:40:21,913 | INFO     | all workflow threads have been joined
[2025-11-26 12:40:25] 2025-11-26 17:40:21,913 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:40:25] 2025-11-26 17:40:21,913 | INFO     | traces error code: 0
[2025-11-26 12:40:25] 2025-11-26 17:40:21,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:40:25] 2025-11-26 17:40:22,875 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:40:25] 2025-11-26 17:40:23,088 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:40:25] 2025-11-26 17:40:23,130 [wrapper] pilotpid: 100382
[2025-11-26 12:40:25] 2025-11-26 17:40:23,212 [wrapper] Pilot exit status: 0
[2025-11-26 12:40:25] 2025-11-26 17:40:23,447 [wrapper] pandaids: 6894238296
[2025-11-26 12:40:25] 2025-11-26 17:40:23,789 [wrapper] cleanup supervisor_pilot 2172094 100383
[2025-11-26 12:40:25] 2025-11-26 17:40:23,805 [wrapper] Test setup, not cleaning
[2025-11-26 12:40:25] 2025-11-26 17:40:23,824 [wrapper] apfmon messages muted
[2025-11-26 12:40:25] 2025-11-26 17:40:23,872 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:40:25] 2025-11-26 17:40:23,897 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:40:25]  *** Error codes and diagnostics ***
[2025-11-26 12:40:25]     "exeErrorCode": 0,
[2025-11-26 12:40:25]     "exeErrorDiag": "",
[2025-11-26 12:40:25]     "pilotErrorCode": 0,
[2025-11-26 12:40:25]     "pilotErrorDiag": "",
[2025-11-26 12:40:25]  *** Listing of results directory ***
[2025-11-26 12:40:25] total 626104
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 21:13 pilot3.tar.gz
[2025-11-26 12:40:25] -rwx------. 1 boincer umatlas     36292 Nov 24 21:47 runpilot2-wrapper.sh
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 21:47 queuedata.json
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas       100 Nov 25 22:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:40:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 22:33 run_atlas
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas       105 Nov 25 22:33 job.xml
[2025-11-26 12:40:25] -rw-r--r--. 2 boincer umatlas 282444322 Nov 25 22:33 EVNT.47523673._000004.pool.root.1
[2025-11-26 12:40:25] -rw-r--r--. 2 boincer umatlas    589940 Nov 25 22:33 input.tar.gz
[2025-11-26 12:40:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:33 start_atlas.sh
[2025-11-26 12:40:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 22:33 shared
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas         0 Nov 25 22:33 boinc_lockfile
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas      2611 Nov 25 22:33 pandaJob.out
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas        57 Nov 25 22:33 setup.sh.local
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas    991877 Nov 25 22:34 agis_schedconf.cvmfs.json
[2025-11-26 12:40:25] drwx------. 5 boincer umatlas      4096 Nov 25 22:34 pilot3
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas 340908032 Nov 26 12:36 HITS.47523675._000076.pool.root.1
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas       532 Nov 26 12:36 boinc_task_state.xml
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas      1048 Nov 26 12:38 memory_monitor_summary.json
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas    896343 Nov 26 12:38 log.47523675._000076.job.log.tgz.1
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas        95 Nov 26 12:39 pilot_heartbeat.json
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas      7790 Nov 26 12:39 heartbeat.json
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas      5010 Nov 26 12:40 pilotlog.txt
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 12:40 init_data.xml
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:40 boinc_mmap_file
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:40 wrapper_checkpoint.txt
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas   6032531 Nov 26 12:40 log.47523675._000076.job.log.1
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas       357 Nov 26 12:40 output.list
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:40 runtime_log
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas   6952960 Nov 26 12:40 result.tar.gz
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 12:40 runtime_log.err
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas       664 Nov 26 12:40 DlcMDmYGyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm83LKDm9dzD4m.diag
[2025-11-26 12:40:25] -rw-r--r--. 1 boincer umatlas     21522 Nov 26 12:40 stderr.txt
[2025-11-26 12:40:25] HITS file was successfully produced:
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas 340908032 Nov 26 12:36 shared/HITS.pool.root.1
[2025-11-26 12:40:25]  *** Contents of shared directory: ***
[2025-11-26 12:40:25] total 616140
[2025-11-26 12:40:25] -rw-r--r--. 2 boincer umatlas 282444322 Nov 25 22:33 ATLAS.root_0
[2025-11-26 12:40:25] -rw-r--r--. 2 boincer umatlas    589940 Nov 25 22:33 input.tar.gz
[2025-11-26 12:40:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 22:33 start_atlas.sh
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas 340908032 Nov 26 12:36 HITS.pool.root.1
[2025-11-26 12:40:25] -rw-------. 1 boincer umatlas   6952960 Nov 26 12:40 result.tar.gz
12:40:27 (95521): run_atlas exited; CPU time 114072.818571
12:40:27 (95521): called boinc_finish(0)

</stderr_txt>
]]>

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