Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:02:32 (843232): wrapper (7.7.26015): starting
19:02:32 (843232): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 19:02:32] Arguments: --nthreads 9
[2025-11-25 19:02:32] Threads: 9
[2025-11-25 19:02:32] Checking for CVMFS
[2025-11-25 19:02:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:02:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:02:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:02:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:02:34] 2.13.3.0 10299 29303 391736 153302 0 439 24784681 32935936 51507 16776704 0 288708731 99.814 133060572 28778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:02:34] CVMFS is ok
[2025-11-25 19:02:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:02:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:02:34] Further information can be found at the LHC@home message board.
[2025-11-25 19:02:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:02:34] Checking for apptainer binary...
[2025-11-25 19:02:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:02:34] Running /usr/bin/apptainer --version
[2025-11-25 19:02:34] apptainer version 1.4.4-1.el9
[2025-11-25 19:02:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:02:34] c-3-40.aglt2.org
[2025-11-25 19:02:34] apptainer works
[2025-11-25 19:02:34] Set ATHENA_PROC_NUMBER=9
[2025-11-25 19:02:34] Set ATHENA_CORE_NUMBER=9
[2025-11-25 19:02:34] Starting ATLAS job with PandaID=6896298639
[2025-11-25 19:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:04:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:04:15] 2025-11-26 15:03:30,912 | INFO     | monitor loop #2901: job 0:6896298639 is in state 'finished'
[2025-11-26 10:04:15] 2025-11-26 15:03:30,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:04:15] 2025-11-26 15:03:32,715 | INFO     | time since job start (54016s) is within the limit (172800.0s)
[2025-11-26 10:04:15] 2025-11-26 15:03:33,423 | INFO     | monitor loop #2902: job 0:6896298639 is in state 'finished'
[2025-11-26 10:04:15] 2025-11-26 15:03:33,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:04:15] 2025-11-26 15:03:34,722 | INFO     | time since job start (54018s) is within the limit (172800.0s)
[2025-11-26 10:04:15] 2025-11-26 15:03:34,724 | INFO     | 54021s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 10:04:15] 2025-11-26 15:03:35,932 | INFO     | monitor loop #2903: job 0:6896298639 is in state 'finished'
[2025-11-26 10:04:15] 2025-11-26 15:03:35,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:04:15] 2025-11-26 15:03:36,741 | INFO     | time since job start (54020s) is within the limit (172800.0s)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,522 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 10:04:15] 2025-11-26 15:03:37,576 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2966.6068124999993
[2025-11-26 10:04:15] 2025-11-26 15:03:37,627 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896298639/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,628 | INFO     | extracted standard info from prmon json
[2025-11-26 10:04:15] 2025-11-26 15:03:37,628 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:04:15] 2025-11-26 15:03:37,628 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:04:15] 2025-11-26 15:03:37,642 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:04:15] 2025-11-26 15:03:37,643 | INFO     | sum of square deviations: 214206031228.8088
[2025-11-26 10:04:15] 2025-11-26 15:03:37,669 | INFO     | sum of deviations: 1273549546036.6914
[2025-11-26 10:04:15] 2025-11-26 15:03:37,669 | INFO     | mean x: 1764142423.514706
[2025-11-26 10:04:15] 2025-11-26 15:03:37,669 | INFO     | mean y: 3057923.369909502
[2025-11-26 10:04:15] 2025-11-26 15:03:37,670 | INFO     | intersect: -10485548628.56857
[2025-11-26 10:04:15] 2025-11-26 15:03:37,671 | INFO     | chi2: 13.534765362220693
[2025-11-26 10:04:15] 2025-11-26 15:03:37,672 | INFO     | sum of square deviations: 210592348508.39795
[2025-11-26 10:04:15] 2025-11-26 15:03:37,709 | INFO     | sum of deviations: 1592860338838.274
[2025-11-26 10:04:15] 2025-11-26 15:03:37,709 | INFO     | mean x: 1764142271.0261662
[2025-11-26 10:04:15] 2025-11-26 15:03:37,709 | INFO     | mean y: 3071396.0750853242
[2025-11-26 10:04:15] 2025-11-26 15:03:37,709 | INFO     | intersect: -13340396566.97678
[2025-11-26 10:04:15] 2025-11-26 15:03:37,711 | INFO     | chi2: 10.208900119214864
[2025-11-26 10:04:15] 2025-11-26 15:03:37,711 | INFO     | current chi2=10.208900119214864 (change=24.57275877341211 %)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,711 | INFO     | right removable region: 878
[2025-11-26 10:04:15] 2025-11-26 15:03:37,712 | INFO     | sum of square deviations: 210591262098.39804
[2025-11-26 10:04:15] 2025-11-26 15:03:37,729 | INFO     | sum of deviations: 906629970256.5676
[2025-11-26 10:04:15] 2025-11-26 15:03:37,729 | INFO     | mean x: 1764142576.0261662
[2025-11-26 10:04:15] 2025-11-26 15:03:37,729 | INFO     | mean y: 3073400.3230944253
[2025-11-26 10:04:15] 2025-11-26 15:03:37,729 | INFO     | intersect: -7591850127.337906
[2025-11-26 10:04:15] 2025-11-26 15:03:37,730 | INFO     | chi2: 9.657047452802704
[2025-11-26 10:04:15] 2025-11-26 15:03:37,731 | INFO     | current chi2=9.657047452802704 (change=28.650056396557723 %)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,732 | INFO     | sum of square deviations: 207017537955.47018
[2025-11-26 10:04:15] 2025-11-26 15:03:37,748 | INFO     | sum of deviations: 773842243794.2999
[2025-11-26 10:04:15] 2025-11-26 15:03:37,748 | INFO     | mean x: 1764142728.534325
[2025-11-26 10:04:15] 2025-11-26 15:03:37,749 | INFO     | mean y: 3079057.423340961
[2025-11-26 10:04:15] 2025-11-26 15:03:37,749 | INFO     | intersect: -6591377532.607453
[2025-11-26 10:04:15] 2025-11-26 15:03:37,750 | INFO     | chi2: 9.076159062678716
[2025-11-26 10:04:15] 2025-11-26 15:03:37,750 | INFO     | current chi2=9.076159062678716 (change=6.015175890591699 %)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,750 | INFO     | left removable region: 20
[2025-11-26 10:04:15] 2025-11-26 15:03:37,751 | INFO     | sum of square deviations: 195854975899.34857
[2025-11-26 10:04:15] 2025-11-26 15:03:37,804 | INFO     | sum of deviations: 1046677754793.955
[2025-11-26 10:04:15] 2025-11-26 15:03:37,804 | INFO     | mean x: 1764142850.560606
[2025-11-26 10:04:15] 2025-11-26 15:03:37,804 | INFO     | mean y: 3101231.702797203
[2025-11-26 10:04:15] 2025-11-26 15:03:37,805 | INFO     | intersect: -9424737246.649206
[2025-11-26 10:04:15] 2025-11-26 15:03:37,813 | INFO     | chi2: 4.755020003687679
[2025-11-26 10:04:15] 2025-11-26 15:03:37,813 | INFO     | current memory leak: 5.34 B/s (using 858 data points, chi2=4.76)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,814 | INFO     | could have reported an average CPU frequency of 2942 MHz (33 samples)
[2025-11-26 10:04:15] 2025-11-26 15:03:37,814 | INFO     | ..............................
[2025-11-26 10:04:15] 2025-11-26 15:03:37,814 | INFO     | . Timing measurements:
[2025-11-26 10:04:15] 2025-11-26 15:03:37,815 | INFO     | . get job = 0 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,815 | INFO     | . initial setup = 3 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,815 | INFO     | . payload setup = 29 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,830 | INFO     | . stage-in = 0 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,830 | INFO     | . payload execution = 53906 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,830 | INFO     | . stage-out = 6 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,831 | INFO     | . log creation = 1 s
[2025-11-26 10:04:15] 2025-11-26 15:03:37,831 | INFO     | ..............................
[2025-11-26 10:04:15] 2025-11-26 15:03:38,085 | INFO     | 
[2025-11-26 10:04:15] 2025-11-26 15:03:38,085 | INFO     | job summary report
[2025-11-26 10:04:15] 2025-11-26 15:03:38,085 | INFO     | --------------------------------------------------
[2025-11-26 10:04:15] 2025-11-26 15:03:38,085 | INFO     | PanDA job id: 6896298639
[2025-11-26 10:04:15] 2025-11-26 15:03:38,085 | INFO     | task id: 47556149
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | errors: (none)
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | pilot state: finished 
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | transexitcode: 0
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | exeerrorcode: 0
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | exeerrordiag: 
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | exitcode: 0
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | exitmsg: OK
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | cpuconsumptiontime: 245651 s
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | nevents: 1000
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | neventsw: 0
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | pid: 864543
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | pgrp: 864543
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | corecount: 9
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | event service: False
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 3: 2284371, 13: 2284399, 20: 2284717, 24: 2284873, 53940: 2334039, 53948: 2343089, 53974: 2343343}
[2025-11-26 10:04:15] 2025-11-26 15:03:38,086 | INFO     | --------------------------------------------------
[2025-11-26 10:04:15] 2025-11-26 15:03:38,087 | INFO     | 
[2025-11-26 10:04:15] 2025-11-26 15:03:38,087 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 10:04:15] 2025-11-26 15:03:38,486 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,486 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,487 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:04:15] 2025-11-26 15:03:38,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:04:15] 2025-11-26 15:03:38,488 | INFO     | job 6896298639 has completed (purged errors)
[2025-11-26 10:04:15] 2025-11-26 15:03:38,488 | INFO     | overall cleanup function is called
[2025-11-26 10:04:15] 2025-11-26 15:03:39,541 | INFO     | --- collectZombieJob: --- 10, [864543]
[2025-11-26 10:04:15] 2025-11-26 15:03:39,541 | INFO     | zombie collector waiting for pid 864543
[2025-11-26 10:04:15] 2025-11-26 15:03:39,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:04:15] 2025-11-26 15:03:39,541 | INFO     | collected zombie processes
[2025-11-26 10:04:15] 2025-11-26 15:03:39,541 | INFO     | will attempt to kill all subprocesses of pid=864543
[2025-11-26 10:04:15] 2025-11-26 15:03:41,873 | INFO     | process IDs to be killed: [864543] (in reverse order)
[2025-11-26 10:04:15] 2025-11-26 15:03:42,912 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:04:15] 2025-11-26 15:03:42,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:04:15] 2025-11-26 15:03:43,067 | INFO     | did not find any defunct processes belonging to 864543
[2025-11-26 10:04:15] 2025-11-26 15:03:43,165 | INFO     | did not find any defunct processes belonging to 864543
[2025-11-26 10:04:15] 2025-11-26 15:03:43,175 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:04:15] 2025-11-26 15:03:43,175 | INFO     | ready for new job
[2025-11-26 10:04:15] 2025-11-26 15:03:43,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:04:15] 2025-11-26 15:03:43,180 | INFO     | ***************************************
[2025-11-26 10:04:15] 2025-11-26 15:03:43,180 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:04:15] 2025-11-26 15:03:43,180 | INFO     | ***************************************
[2025-11-26 10:04:15] 2025-11-26 15:03:43,180 | INFO     | 
[2025-11-26 10:04:15] 2025-11-26 15:03:43,185 | INFO     | architecture information:
[2025-11-26 10:04:15] 2025-11-26 15:03:43,189 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:04:15] 2025-11-26 15:03:43,267 | INFO     | cat /etc/os-release:
[2025-11-26 10:04:15] NAME="CentOS Linux"
[2025-11-26 10:04:15] VERSION="7 (Core)"
[2025-11-26 10:04:15] ID="centos"
[2025-11-26 10:04:15] ID_LIKE="rhel fedora"
[2025-11-26 10:04:15] VERSION_ID="7"
[2025-11-26 10:04:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:04:15] ANSI_COLOR="0;31"
[2025-11-26 10:04:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:04:15] HOME_URL="https://www.centos.org/"
[2025-11-26 10:04:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:04:15] 
[2025-11-26 10:04:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:04:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:04:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:04:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:04:15] 
[2025-11-26 10:04:15] 2025-11-26 15:03:43,268 | INFO     | ***************************************
[2025-11-26 10:04:15] 2025-11-26 15:03:43,798 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 10:04:15] 2025-11-26 15:03:43,841 | INFO     | sufficient remaining disk space (65506639872 B)
[2025-11-26 10:04:15] 2025-11-26 15:03:43,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:04:15] 2025-11-26 15:03:43,842 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:04:15] 2025-11-26 15:03:43,842 | INFO     | update_server=False
[2025-11-26 10:04:15] 2025-11-26 15:03:43,842 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:04:15] 2025-11-26 15:03:43,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:04:15] 2025-11-26 15:03:43,868 | INFO     | all data control threads have been joined
[2025-11-26 10:04:15] 2025-11-26 15:03:44,479 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:04:15] 2025-11-26 15:03:44,479 | INFO     | aborting loop
[2025-11-26 10:04:15] 2025-11-26 15:03:44,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:04:15] 2025-11-26 15:03:44,850 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:44,855 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:44,857 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:44,873 | INFO     | [data] control thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:44,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:45,082 | INFO     | all payload control threads have been joined
[2025-11-26 10:04:15] 2025-11-26 15:03:45,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:04:15] 2025-11-26 15:03:45,444 | INFO     | all job control threads have been joined
[2025-11-26 10:04:15] 2025-11-26 15:03:45,501 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:45,579 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:45,734 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:45,911 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:46,068 | INFO     | [job] validate thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:46,069 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:46,090 | INFO     | [payload] control thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:46,280 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:46,449 | INFO     | [job] control thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:46,797 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:49,291 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:04:15] 2025-11-26 15:03:53,373 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:04:15] 2025-11-26 15:03:54,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140289327208256)>', '<ExcThread(monitor, started 140288832026368)>']
[2025-11-26 10:04:15] 2025-11-26 15:03:59,135 | INFO     | all workflow threads have been joined
[2025-11-26 10:04:15] 2025-11-26 15:03:59,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:04:15] 2025-11-26 15:03:59,136 | INFO     | traces error code: 0
[2025-11-26 10:04:15] 2025-11-26 15:03:59,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:04:15] 2025-11-26 15:04:13,473 | INFO     | PID=848318 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 10:04:15] 2025-11-26 15:04:13,474 | INFO     | .. there are 87 such processes running
[2025-11-26 10:04:15] 2025-11-26 15:04:13,479 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:04:15] 2025-11-26 15:04:13,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:04:15] 2025-11-26 15:04:13,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:04:15] 2025-11-26 15:04:13,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:04:15] 2025-11-26 15:04:13,479 | INFO     | [monitor] control thread has ended
[2025-11-26 10:04:15] 2025-11-26 15:04:14,320 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:04:15] 2025-11-26 15:04:14,339 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:04:15] 2025-11-26 15:04:14,367 [wrapper] pilotpid: 848318
[2025-11-26 10:04:15] 2025-11-26 15:04:14,389 [wrapper] Pilot exit status: 0
[2025-11-26 10:04:15] 2025-11-26 15:04:14,483 [wrapper] pandaids: 6896298639
[2025-11-26 10:04:15] 2025-11-26 15:04:14,882 [wrapper] cleanup supervisor_pilot 1807423 848319
[2025-11-26 10:04:15] 2025-11-26 15:04:14,906 [wrapper] Test setup, not cleaning
[2025-11-26 10:04:15] 2025-11-26 15:04:14,930 [wrapper] apfmon messages muted
[2025-11-26 10:04:15] 2025-11-26 15:04:14,966 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:04:15] 2025-11-26 15:04:14,991 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:04:15]  *** Error codes and diagnostics ***
[2025-11-26 10:04:15]     "exeErrorCode": 0,
[2025-11-26 10:04:15]     "exeErrorDiag": "",
[2025-11-26 10:04:15]     "pilotErrorCode": 0,
[2025-11-26 10:04:15]     "pilotErrorDiag": "",
[2025-11-26 10:04:15]  *** Listing of results directory ***
[2025-11-26 10:04:15] total 1312108
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 21:13 pilot3.tar.gz
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 21:44 queuedata.json
[2025-11-26 10:04:15] -rwx------. 1 boincer umatlas     36292 Nov 24 21:46 runpilot2-wrapper.sh
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:04:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:02 run_atlas
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:02 job.xml
[2025-11-26 10:04:15] -rw-r--r--. 2 boincer umatlas 408338531 Nov 25 19:02 EVNT.47483658._001481.pool.root.1
[2025-11-26 10:04:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:02 start_atlas.sh
[2025-11-26 10:04:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:02 shared
[2025-11-26 10:04:15] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 19:02 input.tar.gz
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:02 boinc_lockfile
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 19:02 pandaJob.out
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas        57 Nov 25 19:02 setup.sh.local
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas    991877 Nov 25 19:03 agis_schedconf.cvmfs.json
[2025-11-26 10:04:15] drwx------. 5 boincer umatlas      4096 Nov 25 19:03 pilot3
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas       532 Nov 26 09:44 boinc_task_state.xml
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 09:55 init_data.xml
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas 914314203 Nov 26 10:02 HITS.47556149._004680.pool.root.1
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas      1059 Nov 26 10:03 memory_monitor_summary.json
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas   2125988 Nov 26 10:03 log.47556149._004680.job.log.tgz.1
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas      8618 Nov 26 10:03 heartbeat.json
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:04 boinc_mmap_file
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas        29 Nov 26 10:04 wrapper_checkpoint.txt
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas        95 Nov 26 10:04 pilot_heartbeat.json
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas       822 Nov 26 10:04 pilotlog.txt
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas   6385057 Nov 26 10:04 log.47556149._004680.job.log.1
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas       353 Nov 26 10:04 output.list
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:04 runtime_log
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas   8529920 Nov 26 10:04 result.tar.gz
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas      9333 Nov 26 10:04 runtime_log.err
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas       658 Nov 26 10:04 DThKDmcFyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu3LKDmUqIXim.diag
[2025-11-26 10:04:15] -rw-r--r--. 1 boincer umatlas     21579 Nov 26 10:04 stderr.txt
[2025-11-26 10:04:15] HITS file was successfully produced:
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas 914314203 Nov 26 10:02 shared/HITS.pool.root.1
[2025-11-26 10:04:15]  *** Contents of shared directory: ***
[2025-11-26 10:04:15] total 1300596
[2025-11-26 10:04:15] -rw-r--r--. 2 boincer umatlas 408338531 Nov 25 19:02 ATLAS.root_0
[2025-11-26 10:04:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:02 start_atlas.sh
[2025-11-26 10:04:15] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 19:02 input.tar.gz
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas 914314203 Nov 26 10:02 HITS.pool.root.1
[2025-11-26 10:04:15] -rw-------. 1 boincer umatlas   8529920 Nov 26 10:04 result.tar.gz
10:04:17 (843232): run_atlas exited; CPU time 247747.175429
10:04:17 (843232): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN