Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:16:03 (19086): wrapper (7.7.26015): starting
17:16:03 (19086): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 17:16:03] Arguments: --nthreads 12
[2025-11-25 17:16:03] Threads: 12
[2025-11-25 17:16:03] Checking for CVMFS
[2025-11-25 17:16:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:16:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:16:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:16:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:16:04] 2.11.2.0 6893 116743 89960 153298 0 82 10510364 20275200 1 130560 0 49975564 99.933 5991221 31172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:16:04] CVMFS is ok
[2025-11-25 17:16:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:16:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:16:04] Further information can be found at the LHC@home message board.
[2025-11-25 17:16:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:16:04] Checking for apptainer binary...
[2025-11-25 17:16:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:16:04] Running /usr/bin/apptainer --version
[2025-11-25 17:16:04] apptainer version 1.3.2-1.el7
[2025-11-25 17:16:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:16:05] c-205-3.aglt2.org
[2025-11-25 17:16:05] apptainer works
[2025-11-25 17:16:05] Set ATHENA_PROC_NUMBER=12
[2025-11-25 17:16:05] Set ATHENA_CORE_NUMBER=12
[2025-11-25 17:16:05] Starting ATLAS job with PandaID=6896298638
[2025-11-25 17:16:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:18:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:18:09] 2025-11-26 05:17:34,862 | INFO     | monitor loop #1896: job 0:6896298638 is in state 'finished'
[2025-11-26 00:18:09] 2025-11-26 05:17:34,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,420 | INFO     | time since job start (25274s) is within the limit (172800.0s)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,541 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 00:18:09] 2025-11-26 05:17:35,544 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1950.75
[2025-11-26 00:18:09] 2025-11-26 05:17:35,545 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896298638/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,546 | INFO     | extracted standard info from prmon json
[2025-11-26 00:18:09] 2025-11-26 05:17:35,546 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:18:09] 2025-11-26 05:17:35,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:18:09] 2025-11-26 05:17:35,553 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:18:09] 2025-11-26 05:17:35,553 | INFO     | sum of square deviations: 22002769474.359848
[2025-11-26 00:18:09] 2025-11-26 05:17:35,557 | INFO     | sum of deviations: 311075537300.47394
[2025-11-26 00:18:09] 2025-11-26 05:17:35,557 | INFO     | mean x: 1764121607.799517
[2025-11-26 00:18:09] 2025-11-26 05:17:35,557 | INFO     | mean y: 3432264.3671497586
[2025-11-26 00:18:09] 2025-11-26 05:17:35,557 | INFO     | intersect: -24937749692.254555
[2025-11-26 00:18:09] 2025-11-26 05:17:35,558 | INFO     | chi2: 5.285920866433075
[2025-11-26 00:18:09] 2025-11-26 05:17:35,558 | INFO     | sum of square deviations: 21215192526.405876
[2025-11-26 00:18:09] 2025-11-26 05:17:35,562 | INFO     | sum of deviations: 458403343117.23926
[2025-11-26 00:18:09] 2025-11-26 05:17:35,562 | INFO     | mean x: 1764121455.3031785
[2025-11-26 00:18:09] 2025-11-26 05:17:35,562 | INFO     | mean y: 3460758.0464547677
[2025-11-26 00:18:09] 2025-11-26 05:17:35,562 | INFO     | intersect: -38114466843.566826
[2025-11-26 00:18:09] 2025-11-26 05:17:35,563 | INFO     | chi2: 2.664446625466671
[2025-11-26 00:18:09] 2025-11-26 05:17:35,563 | INFO     | current chi2=2.664446625466671 (change=49.59352035732172 %)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,563 | INFO     | sum of square deviations: 20446639190.94053
[2025-11-26 00:18:09] 2025-11-26 05:17:35,568 | INFO     | sum of deviations: 497628427301.851
[2025-11-26 00:18:09] 2025-11-26 05:17:35,568 | INFO     | mean x: 1764121302.8069308
[2025-11-26 00:18:09] 2025-11-26 05:17:35,568 | INFO     | mean y: 3468492.7673267326
[2025-11-26 00:18:09] 2025-11-26 05:17:35,568 | INFO     | intersect: -42931553800.50394
[2025-11-26 00:18:09] 2025-11-26 05:17:35,568 | INFO     | chi2: 2.2584946028277453
[2025-11-26 00:18:09] 2025-11-26 05:17:35,569 | INFO     | current chi2=2.2584946028277453 (change=15.235884958582139 %)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,569 | INFO     | right removable region: 403
[2025-11-26 00:18:09] 2025-11-26 05:17:35,569 | INFO     | sum of square deviations: 21215116886.405884
[2025-11-26 00:18:09] 2025-11-26 05:17:35,573 | INFO     | sum of deviations: 185695126335.06143
[2025-11-26 00:18:09] 2025-11-26 05:17:35,574 | INFO     | mean x: 1764121760.3031785
[2025-11-26 00:18:09] 2025-11-26 05:17:35,574 | INFO     | mean y: 3456449.491442543
[2025-11-26 00:18:09] 2025-11-26 05:17:35,574 | INFO     | intersect: -15437835479.465141
[2025-11-26 00:18:09] 2025-11-26 05:17:35,574 | INFO     | chi2: 3.159229734660258
[2025-11-26 00:18:09] 2025-11-26 05:17:35,574 | INFO     | current chi2=3.159229734660258 (change=40.23312466287264 %)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,575 | INFO     | sum of square deviations: 20446512615.552044
[2025-11-26 00:18:09] 2025-11-26 05:17:35,579 | INFO     | sum of deviations: 154054299203.8886
[2025-11-26 00:18:09] 2025-11-26 05:17:35,579 | INFO     | mean x: 1764121912.8044555
[2025-11-26 00:18:09] 2025-11-26 05:17:35,579 | INFO     | mean y: 3462720.0618811883
[2025-11-26 00:18:09] 2025-11-26 05:17:35,580 | INFO     | intersect: -13288318137.50106
[2025-11-26 00:18:09] 2025-11-26 05:17:35,580 | INFO     | chi2: 3.098598138505421
[2025-11-26 00:18:09] 2025-11-26 05:17:35,580 | INFO     | current chi2=3.098598138505421 (change=1.9191892089910716 %)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,580 | INFO     | left removable region: 20
[2025-11-26 00:18:09] 2025-11-26 05:17:35,581 | INFO     | sum of square deviations: 17420999109.644733
[2025-11-26 00:18:09] 2025-11-26 05:17:35,584 | INFO     | sum of deviations: 301386146350.77264
[2025-11-26 00:18:09] 2025-11-26 05:17:35,584 | INFO     | mean x: 1764121882.308094
[2025-11-26 00:18:09] 2025-11-26 05:17:35,584 | INFO     | mean y: 3508118.9765013056
[2025-11-26 00:18:09] 2025-11-26 05:17:35,584 | INFO     | intersect: -30516090237.902718
[2025-11-26 00:18:09] 2025-11-26 05:17:35,585 | INFO     | chi2: 0.027548814347219567
[2025-11-26 00:18:09] 2025-11-26 05:17:35,585 | INFO     | current memory leak: 17.30 B/s (using 383 data points, chi2=0.03)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | could have reported an average CPU frequency of 2384 MHz (17 samples)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | ..............................
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . Timing measurements:
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . get job = 0 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . initial setup = 2 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . payload setup = 8 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . stage-in = 0 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . payload execution = 25233 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,586 | INFO     | . stage-out = 3 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,587 | INFO     | . log creation = 0 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,587 | INFO     | ..............................
[2025-11-26 00:18:09] 2025-11-26 05:17:35,892 | INFO     | 
[2025-11-26 00:18:09] 2025-11-26 05:17:35,896 | INFO     | job summary report
[2025-11-26 00:18:09] 2025-11-26 05:17:35,897 | INFO     | --------------------------------------------------
[2025-11-26 00:18:09] 2025-11-26 05:17:35,897 | INFO     | PanDA job id: 6896298638
[2025-11-26 00:18:09] 2025-11-26 05:17:35,897 | INFO     | task id: 47556149
[2025-11-26 00:18:09] 2025-11-26 05:17:35,897 | INFO     | errors: (none)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,898 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:18:09] 2025-11-26 05:17:35,898 | INFO     | pilot state: finished 
[2025-11-26 00:18:09] 2025-11-26 05:17:35,898 | INFO     | transexitcode: 0
[2025-11-26 00:18:09] 2025-11-26 05:17:35,898 | INFO     | exeerrorcode: 0
[2025-11-26 00:18:09] 2025-11-26 05:17:35,898 | INFO     | exeerrordiag: 
[2025-11-26 00:18:09] 2025-11-26 05:17:35,899 | INFO     | exitcode: 0
[2025-11-26 00:18:09] 2025-11-26 05:17:35,899 | INFO     | exitmsg: OK
[2025-11-26 00:18:09] 2025-11-26 05:17:35,899 | INFO     | cpuconsumptiontime: 289492 s
[2025-11-26 00:18:09] 2025-11-26 05:17:35,899 | INFO     | nevents: 1000
[2025-11-26 00:18:09] 2025-11-26 05:17:35,899 | INFO     | neventsw: 0
[2025-11-26 00:18:09] 2025-11-26 05:17:35,899 | INFO     | pid: 29162
[2025-11-26 00:18:09] 2025-11-26 05:17:35,900 | INFO     | pgrp: 29162
[2025-11-26 00:18:09] 2025-11-26 05:17:35,900 | INFO     | corecount: 12
[2025-11-26 00:18:09] 2025-11-26 05:17:35,900 | INFO     | event service: False
[2025-11-26 00:18:09] 2025-11-26 05:17:35,900 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 25245: 2321613, 25249: 2330607, 25250: 2330663, 25258: 2331101}
[2025-11-26 00:18:09] 2025-11-26 05:17:35,900 | INFO     | --------------------------------------------------
[2025-11-26 00:18:09] 2025-11-26 05:17:35,901 | INFO     | 
[2025-11-26 00:18:09] 2025-11-26 05:17:35,902 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 00:18:09] 2025-11-26 05:17:35,924 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,924 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,925 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,925 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,925 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,925 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,925 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,926 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,926 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,926 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,927 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,927 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,928 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:18:09] 2025-11-26 05:17:35,928 | INFO     | job 6896298638 has completed (purged errors)
[2025-11-26 00:18:09] 2025-11-26 05:17:35,929 | INFO     | overall cleanup function is called
[2025-11-26 00:18:09] 2025-11-26 05:17:36,548 | INFO     | PID=22796 has CPU usage=12.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 00:18:09] 2025-11-26 05:17:36,945 | INFO     | --- collectZombieJob: --- 10, [29162]
[2025-11-26 00:18:09] 2025-11-26 05:17:36,945 | INFO     | zombie collector waiting for pid 29162
[2025-11-26 00:18:09] 2025-11-26 05:17:36,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:18:09] 2025-11-26 05:17:36,946 | INFO     | collected zombie processes
[2025-11-26 00:18:09] 2025-11-26 05:17:36,946 | INFO     | will attempt to kill all subprocesses of pid=29162
[2025-11-26 00:18:09] 2025-11-26 05:17:37,039 | INFO     | process IDs to be killed: [29162] (in reverse order)
[2025-11-26 00:18:09] 2025-11-26 05:17:37,090 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:18:09] 2025-11-26 05:17:37,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:18:09] 2025-11-26 05:17:37,094 | INFO     | did not find any defunct processes belonging to 29162
[2025-11-26 00:18:09] 2025-11-26 05:17:37,096 | INFO     | did not find any defunct processes belonging to 29162
[2025-11-26 00:18:09] 2025-11-26 05:17:37,098 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:18:09] 2025-11-26 05:17:37,099 | INFO     | ready for new job
[2025-11-26 00:18:09] 2025-11-26 05:17:37,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:18:09] 2025-11-26 05:17:37,101 | INFO     | ***************************************
[2025-11-26 00:18:09] 2025-11-26 05:17:37,102 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:18:09] 2025-11-26 05:17:37,102 | INFO     | ***************************************
[2025-11-26 00:18:09] 2025-11-26 05:17:37,102 | INFO     | 
[2025-11-26 00:18:09] 2025-11-26 05:17:37,102 | INFO     | architecture information:
[2025-11-26 00:18:09] 2025-11-26 05:17:37,103 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:18:09] 2025-11-26 05:17:37,119 | INFO     | cat /etc/os-release:
[2025-11-26 00:18:09] NAME="CentOS Linux"
[2025-11-26 00:18:09] VERSION="7 (Core)"
[2025-11-26 00:18:09] ID="centos"
[2025-11-26 00:18:09] ID_LIKE="rhel fedora"
[2025-11-26 00:18:09] VERSION_ID="7"
[2025-11-26 00:18:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:18:09] ANSI_COLOR="0;31"
[2025-11-26 00:18:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:18:09] HOME_URL="https://www.centos.org/"
[2025-11-26 00:18:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:18:09] 
[2025-11-26 00:18:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:18:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:18:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:18:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:18:09] 
[2025-11-26 00:18:09] 2025-11-26 05:17:37,119 | INFO     | ***************************************
[2025-11-26 00:18:09] 2025-11-26 05:17:37,622 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 00:18:09] 2025-11-26 05:17:37,639 | INFO     | sufficient remaining disk space (28390195200 B)
[2025-11-26 00:18:09] 2025-11-26 05:17:37,639 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:18:09] 2025-11-26 05:17:37,640 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:18:09] 2025-11-26 05:17:37,640 | INFO     | update_server=False
[2025-11-26 00:18:09] 2025-11-26 05:17:37,640 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:18:09] 2025-11-26 05:17:37,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:18:09] 2025-11-26 05:17:37,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:18:09] 2025-11-26 05:17:38,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:18:09] 2025-11-26 05:17:38,337 | INFO     | all data control threads have been joined
[2025-11-26 00:18:09] 2025-11-26 05:17:38,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:18:09] 2025-11-26 05:17:38,370 | INFO     | aborting loop
[2025-11-26 00:18:09] 2025-11-26 05:17:38,399 | INFO     | all job control threads have been joined
[2025-11-26 00:18:09] 2025-11-26 05:17:38,492 | INFO     | all payload control threads have been joined
[2025-11-26 00:18:09] 2025-11-26 05:17:38,646 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:38,646 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:38,800 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:38,967 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,342 | INFO     | [data] control thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,376 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,396 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,405 | INFO     | [job] control thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,466 | INFO     | [job] validate thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,498 | INFO     | [payload] control thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,644 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,647 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,647 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:39,653 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:40,062 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:17:42,116 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:18:09] 2025-11-26 05:18:02,231 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:18:09] 2025-11-26 05:18:03,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705676437312)>', '<ExcThread(monitor, started 139704934586112)>']
[2025-11-26 00:18:09] 2025-11-26 05:18:08,427 | INFO     | all workflow threads have been joined
[2025-11-26 00:18:09] 2025-11-26 05:18:08,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:18:09] 2025-11-26 05:18:08,428 | INFO     | traces error code: 0
[2025-11-26 00:18:09] 2025-11-26 05:18:08,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:18:09] 2025-11-26 05:18:08,750 | INFO     | PID=22796 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 00:18:09] 2025-11-26 05:18:08,750 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:18:09] 2025-11-26 05:18:08,750 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:18:09] 2025-11-26 05:18:08,750 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:18:09] 2025-11-26 05:18:08,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:18:09] 2025-11-26 05:18:08,751 | INFO     | [monitor] control thread has ended
[2025-11-26 00:18:09] 2025-11-26 05:18:08,846 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:18:09] 2025-11-26 05:18:08,849 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:18:09] 2025-11-26 05:18:08,853 [wrapper] pilotpid: 22796
[2025-11-26 00:18:09] 2025-11-26 05:18:08,857 [wrapper] Pilot exit status: 0
[2025-11-26 00:18:09] 2025-11-26 05:18:08,871 [wrapper] pandaids: 6896298638
[2025-11-26 00:18:09] 2025-11-26 05:18:08,912 [wrapper] cleanup supervisor_pilot 11599 22797
[2025-11-26 00:18:09] 2025-11-26 05:18:08,917 [wrapper] Test setup, not cleaning
[2025-11-26 00:18:09] 2025-11-26 05:18:08,920 [wrapper] apfmon messages muted
[2025-11-26 00:18:09] 2025-11-26 05:18:08,925 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:18:09] 2025-11-26 05:18:08,928 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:18:09]  *** Error codes and diagnostics ***
[2025-11-26 00:18:09]     "exeErrorCode": 0,
[2025-11-26 00:18:09]     "exeErrorDiag": "",
[2025-11-26 00:18:09]     "pilotErrorCode": 0,
[2025-11-26 00:18:09]     "pilotErrorDiag": "",
[2025-11-26 00:18:09]  *** Listing of results directory ***
[2025-11-26 00:18:09] total 1296224
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 21:13 pilot3.tar.gz
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 21:44 queuedata.json
[2025-11-26 00:18:09] -rwx------ 1 boincer umatlas     36292 Nov 24 21:46 runpilot2-wrapper.sh
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas       100 Nov 25 17:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:18:09] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 17:16 run_atlas
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas       105 Nov 25 17:16 job.xml
[2025-11-26 00:18:09] -rw-r--r-- 2 boincer umatlas 408338531 Nov 25 17:16 EVNT.47483658._001481.pool.root.1
[2025-11-26 00:18:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:16 start_atlas.sh
[2025-11-26 00:18:09] drwxrwx--x 2 boincer umatlas      4096 Nov 25 17:16 shared
[2025-11-26 00:18:09] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 17:16 input.tar.gz
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas         0 Nov 25 17:16 boinc_lockfile
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 17:16 pandaJob.out
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas        57 Nov 25 17:16 setup.sh.local
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas    991877 Nov 25 17:16 agis_schedconf.cvmfs.json
[2025-11-26 00:18:09] drwx------ 5 boincer umatlas      4096 Nov 25 17:16 pilot3
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas       533 Nov 26 00:07 boinc_task_state.xml
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 00:12 init_data.xml
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas 903651124 Nov 26 00:16 HITS.47556149._004679.pool.root.1
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas      1062 Nov 26 00:17 memory_monitor_summary.json
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas        95 Nov 26 00:17 pilot_heartbeat.json
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas   1516240 Nov 26 00:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas   2175351 Nov 26 00:17 log.47556149._004679.job.log.tgz.1
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas      8661 Nov 26 00:17 heartbeat.json
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 00:18 boinc_mmap_file
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas        29 Nov 26 00:18 wrapper_checkpoint.txt
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas       745 Nov 26 00:18 pilotlog.txt
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas   3536317 Nov 26 00:18 log.47556149._004679.job.log.1
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas       353 Nov 26 00:18 output.list
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas       620 Nov 26 00:18 runtime_log
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas   5734400 Nov 26 00:18 result.tar.gz
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas      9340 Nov 26 00:18 runtime_log.err
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas       669 Nov 26 00:18 FofKDmcFyh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmt3LKDm1zl06m.diag
[2025-11-26 00:18:09] -rw-r--r-- 1 boincer umatlas     21417 Nov 26 00:18 stderr.txt
[2025-11-26 00:18:09] HITS file was successfully produced:
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas 903651124 Nov 26 00:16 shared/HITS.pool.root.1
[2025-11-26 00:18:09]  *** Contents of shared directory: ***
[2025-11-26 00:18:09] total 1287444
[2025-11-26 00:18:09] -rw-r--r-- 2 boincer umatlas 408338531 Nov 25 17:16 ATLAS.root_0
[2025-11-26 00:18:09] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:16 start_atlas.sh
[2025-11-26 00:18:09] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 17:16 input.tar.gz
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas 903651124 Nov 26 00:16 HITS.pool.root.1
[2025-11-26 00:18:09] -rw------- 1 boincer umatlas   5734400 Nov 26 00:18 result.tar.gz
00:18:11 (19086): run_atlas exited; CPU time 283013.960900
00:18:11 (19086): called boinc_finish(0)

</stderr_txt>
]]>

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