Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:43:41 (130528): wrapper (7.7.26015): starting
18:43:41 (130528): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:43:41] Arguments: --nthreads 8
[2025-11-25 18:43:41] Threads: 8
[2025-11-25 18:43:41] Checking for CVMFS
[2025-11-25 18:43:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:43:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:43:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:43:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:43:43] 2.13.3.0 11314 29286 220680 153302 1 208 22456524 32935936 57745 16776704 0 221590942 99.643 217470954 34071 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:43:43] CVMFS is ok
[2025-11-25 18:43:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:43:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:43:43] Further information can be found at the LHC@home message board.
[2025-11-25 18:43:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:43:43] Checking for apptainer binary...
[2025-11-25 18:43:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:43:43] Running /usr/bin/apptainer --version
[2025-11-25 18:43:43] apptainer version 1.4.4-1.el9
[2025-11-25 18:43:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:43:43] c7-2-10.aglt2.org
[2025-11-25 18:43:43] apptainer works
[2025-11-25 18:43:43] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:43:43] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:43:43] Starting ATLAS job with PandaID=6895362758
[2025-11-25 18:43:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 13:25:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 13:25:27] 2025-11-26 18:24:45,687 | INFO     | this job has now completed (state=finished)
[2025-11-26 13:25:27] 2025-11-26 18:24:45,687 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 13:25:27] 2025-11-26 18:24:45,687 | INFO     | log transfer has been attempted: DONE
[2025-11-26 13:25:27] 2025-11-26 18:24:45,687 | INFO     | job 6895362758 has finished - writing final server update
[2025-11-26 13:25:27] 2025-11-26 18:24:45,688 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 13:25:27] 2025-11-26 18:24:45,688 | INFO     | executing command: lscpu
[2025-11-26 13:25:27] 2025-11-26 18:24:45,785 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 13:25:27] 2025-11-26 18:24:45,862 | INFO     | time since job start (67243s) is within the limit (172800.0s)
[2025-11-26 13:25:27] 2025-11-26 18:24:47,789 | WARNING  | process 145584 can no longer be monitored (due to stat problems) - aborting
[2025-11-26 13:25:27] 2025-11-26 18:24:47,789 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895362758/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:25:27] 2025-11-26 18:24:47,896 | INFO     | time since job start (67245s) is within the limit (172800.0s)
[2025-11-26 13:25:27] 2025-11-26 18:24:48,951 | INFO     | number of running child processes to parent process 145584: 1
[2025-11-26 13:25:27] 2025-11-26 18:24:48,951 | INFO     | maximum number of monitored processes: 16
[2025-11-26 13:25:27] 2025-11-26 18:24:49,918 | INFO     | time since job start (67247s) is within the limit (172800.0s)
[2025-11-26 13:25:27] 2025-11-26 18:24:51,464 | INFO     | monitor loop #3704: job 0:6895362758 is in state 'finished'
[2025-11-26 13:25:27] 2025-11-26 18:24:51,465 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 13:25:27] 2025-11-26 18:24:51,883 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 13:25:27] 2025-11-26 18:24:51,896 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3269.0170416666665
[2025-11-26 13:25:27] 2025-11-26 18:24:51,926 | INFO     | time since job start (67249s) is within the limit (172800.0s)
[2025-11-26 13:25:27] 2025-11-26 18:24:51,931 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895362758/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 13:25:27] 2025-11-26 18:24:51,931 | INFO     | extracted standard info from prmon json
[2025-11-26 13:25:27] 2025-11-26 18:24:51,932 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 13:25:27] 2025-11-26 18:24:51,932 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 13:25:27] 2025-11-26 18:24:51,957 | INFO     | fitting pss+swap vs Time
[2025-11-26 13:25:27] 2025-11-26 18:24:51,962 | INFO     | sum of square deviations: 414975890635.5824
[2025-11-26 13:25:27] 2025-11-26 18:24:52,019 | INFO     | sum of deviations: 8495650222322.78
[2025-11-26 13:25:27] 2025-11-26 18:24:52,019 | INFO     | mean x: 1764147861.8638837
[2025-11-26 13:25:27] 2025-11-26 18:24:52,019 | INFO     | mean y: 4400018.878402904
[2025-11-26 13:25:27] 2025-11-26 18:24:52,019 | INFO     | intersect: -36112356431.47583
[2025-11-26 13:25:27] 2025-11-26 18:24:52,024 | INFO     | chi2: 29.876482955242597
[2025-11-26 13:25:27] 2025-11-26 18:24:52,025 | INFO     | sum of square deviations: 409353107512.4179
[2025-11-26 13:25:27] 2025-11-26 18:24:52,074 | INFO     | sum of deviations: 9121041440466.07
[2025-11-26 13:25:27] 2025-11-26 18:24:52,075 | INFO     | mean x: 1764147709.3655424
[2025-11-26 13:25:27] 2025-11-26 18:24:52,075 | INFO     | mean y: 4416983.186873291
[2025-11-26 13:25:27] 2025-11-26 18:24:52,075 | INFO     | intersect: -39303613343.02308
[2025-11-26 13:25:27] 2025-11-26 18:24:52,076 | INFO     | chi2: 25.947287207132064
[2025-11-26 13:25:27] 2025-11-26 18:24:52,076 | INFO     | current chi2=25.947287207132064 (change=13.151466837635436 %)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,076 | INFO     | right removable region: 1096
[2025-11-26 13:25:27] 2025-11-26 18:24:52,077 | INFO     | sum of square deviations: 409352862902.4181
[2025-11-26 13:25:27] 2025-11-26 18:24:52,166 | INFO     | sum of deviations: 7942857768534.0
[2025-11-26 13:25:27] 2025-11-26 18:24:52,167 | INFO     | mean x: 1764148014.3655424
[2025-11-26 13:25:27] 2025-11-26 18:24:52,167 | INFO     | mean y: 4415002.301731996
[2025-11-26 13:25:27] 2025-11-26 18:24:52,167 | INFO     | intersect: -34226142618.318752
[2025-11-26 13:25:27] 2025-11-26 18:24:52,168 | INFO     | chi2: 27.00926649030132
[2025-11-26 13:25:27] 2025-11-26 18:24:52,168 | INFO     | current chi2=27.00926649030132 (change=9.596900911116611 %)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,168 | INFO     | left removable region: 10
[2025-11-26 13:25:27] 2025-11-26 18:24:52,169 | INFO     | sum of square deviations: 397161972609.64
[2025-11-26 13:25:27] 2025-11-26 18:24:52,187 | INFO     | sum of deviations: 8384884504365.862
[2025-11-26 13:25:27] 2025-11-26 18:24:52,188 | INFO     | mean x: 1764147983.8664825
[2025-11-26 13:25:27] 2025-11-26 18:24:52,188 | INFO     | mean y: 4445021.605893186
[2025-11-26 13:25:27] 2025-11-26 18:24:52,188 | INFO     | intersect: -37240251383.07529
[2025-11-26 13:25:27] 2025-11-26 18:24:52,189 | INFO     | chi2: 21.465654986460816
[2025-11-26 13:25:27] 2025-11-26 18:24:52,189 | INFO     | current memory leak: 21.11 B/s (using 1086 data points, chi2=21.47)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | could have reported an average CPU frequency of 3368 MHz (40 samples)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | ..............................
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . Timing measurements:
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . get job = 0 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . initial setup = 3 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . payload setup = 12 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . stage-in = 0 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . payload execution = 67202 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,191 | INFO     | . stage-out = 4 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,192 | INFO     | . log creation = 0 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,192 | INFO     | ..............................
[2025-11-26 13:25:27] 2025-11-26 18:24:52,338 | INFO     | 
[2025-11-26 13:25:27] 2025-11-26 18:24:52,342 | INFO     | job summary report
[2025-11-26 13:25:27] 2025-11-26 18:24:52,342 | INFO     | --------------------------------------------------
[2025-11-26 13:25:27] 2025-11-26 18:24:52,342 | INFO     | PanDA job id: 6895362758
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | task id: 47556137
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | errors: (none)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | pilot state: finished 
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | transexitcode: 0
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | exeerrorcode: 0
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | exeerrordiag: 
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | exitcode: 0
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | exitmsg: OK
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | cpuconsumptiontime: 196264 s
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | nevents: 1000
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | neventsw: 0
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | pid: 145584
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | pgrp: 145584
[2025-11-26 13:25:27] 2025-11-26 18:24:52,343 | INFO     | corecount: 8
[2025-11-26 13:25:27] 2025-11-26 18:24:52,344 | INFO     | event service: False
[2025-11-26 13:25:27] 2025-11-26 18:24:52,344 | INFO     | sizes: {0: 2284308, 7: 2284570, 11: 2284598, 67219: 2340305, 67224: 2349355, 67231: 2349545}
[2025-11-26 13:25:27] 2025-11-26 18:24:52,344 | INFO     | --------------------------------------------------
[2025-11-26 13:25:27] 2025-11-26 18:24:52,344 | INFO     | 
[2025-11-26 13:25:27] 2025-11-26 18:24:52,344 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | job 6895362758 has completed (purged errors)
[2025-11-26 13:25:27] 2025-11-26 18:24:52,370 | INFO     | overall cleanup function is called
[2025-11-26 13:25:27] 2025-11-26 18:24:53,387 | INFO     | --- collectZombieJob: --- 10, [145584]
[2025-11-26 13:25:27] 2025-11-26 18:24:53,388 | INFO     | zombie collector waiting for pid 145584
[2025-11-26 13:25:27] 2025-11-26 18:24:53,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 13:25:27] 2025-11-26 18:24:53,388 | INFO     | collected zombie processes
[2025-11-26 13:25:27] 2025-11-26 18:24:53,388 | INFO     | will attempt to kill all subprocesses of pid=145584
[2025-11-26 13:25:27] 2025-11-26 18:24:54,991 | INFO     | process IDs to be killed: [145584] (in reverse order)
[2025-11-26 13:25:27] 2025-11-26 18:24:55,206 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 13:25:27] 2025-11-26 18:24:55,207 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 13:25:27] 2025-11-26 18:24:55,231 | INFO     | did not find any defunct processes belonging to 145584
[2025-11-26 13:25:27] 2025-11-26 18:24:55,254 | INFO     | did not find any defunct processes belonging to 145584
[2025-11-26 13:25:27] 2025-11-26 18:24:55,255 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 13:25:27] 2025-11-26 18:24:55,255 | INFO     | ready for new job
[2025-11-26 13:25:27] 2025-11-26 18:24:55,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 13:25:27] 2025-11-26 18:24:55,263 | INFO     | ***************************************
[2025-11-26 13:25:27] 2025-11-26 18:24:55,263 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 13:25:27] 2025-11-26 18:24:55,263 | INFO     | ***************************************
[2025-11-26 13:25:27] 2025-11-26 18:24:55,267 | INFO     | 
[2025-11-26 13:25:27] 2025-11-26 18:24:55,272 | INFO     | architecture information:
[2025-11-26 13:25:27] 2025-11-26 18:24:55,284 | INFO     | executing command: cat /etc/os-release
[2025-11-26 13:25:27] 2025-11-26 18:24:55,306 | INFO     | cat /etc/os-release:
[2025-11-26 13:25:27] NAME="CentOS Linux"
[2025-11-26 13:25:27] VERSION="7 (Core)"
[2025-11-26 13:25:27] ID="centos"
[2025-11-26 13:25:27] ID_LIKE="rhel fedora"
[2025-11-26 13:25:27] VERSION_ID="7"
[2025-11-26 13:25:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 13:25:27] ANSI_COLOR="0;31"
[2025-11-26 13:25:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 13:25:27] HOME_URL="https://www.centos.org/"
[2025-11-26 13:25:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 13:25:27] 
[2025-11-26 13:25:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 13:25:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 13:25:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 13:25:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 13:25:27] 
[2025-11-26 13:25:27] 2025-11-26 18:24:55,306 | INFO     | ***************************************
[2025-11-26 13:25:27] 2025-11-26 18:24:55,808 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 13:25:27] 2025-11-26 18:24:55,824 | INFO     | sufficient remaining disk space (67711795200 B)
[2025-11-26 13:25:27] 2025-11-26 18:24:55,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 13:25:27] 2025-11-26 18:24:55,824 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 13:25:27] 2025-11-26 18:24:55,824 | INFO     | update_server=False
[2025-11-26 13:25:27] 2025-11-26 18:24:55,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 13:25:27] 2025-11-26 18:24:55,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 13:25:27] 2025-11-26 18:24:55,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 13:25:27] 2025-11-26 18:24:55,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:25:27] 2025-11-26 18:24:55,826 | INFO     | aborting loop
[2025-11-26 13:25:27] 2025-11-26 18:24:56,440 | INFO     | all data control threads have been joined
[2025-11-26 13:25:27] 2025-11-26 18:24:56,545 | INFO     | all payload control threads have been joined
[2025-11-26 13:25:27] 2025-11-26 18:24:56,829 | INFO     | [job] retrieve thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:56,834 | INFO     | [job] job monitor thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,048 | INFO     | [data] copytool_in thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,288 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,358 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 13:25:27] 2025-11-26 18:24:57,417 | INFO     | all job control threads have been joined
[2025-11-26 13:25:27] 2025-11-26 18:24:57,446 | INFO     | [data] control thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,505 | INFO     | [payload] validate_post thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,551 | INFO     | [payload] control thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,566 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,802 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,826 | INFO     | [data] copytool_out thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,946 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:57,985 | INFO     | [payload] failed_post thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:58,274 | INFO     | [job] validate thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:58,364 | INFO     | [job] queue monitor thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:58,423 | INFO     | [job] control thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:24:59,836 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 13:25:27] 2025-11-26 18:25:01,899 | INFO     | [monitor] cgroup control has ended
[2025-11-26 13:25:27] 2025-11-26 18:25:02,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502684411712)>', '<ExcThread(monitor, started 140502045280000)>']
[2025-11-26 13:25:27] 2025-11-26 18:25:07,385 | INFO     | all workflow threads have been joined
[2025-11-26 13:25:27] 2025-11-26 18:25:07,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 13:25:27] 2025-11-26 18:25:07,389 | INFO     | traces error code: 0
[2025-11-26 13:25:27] 2025-11-26 18:25:07,393 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 13:25:27] 2025-11-26 18:25:26,357 | INFO     | PID=136134 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 13:25:27] 2025-11-26 18:25:26,357 | INFO     | .. there are 81 such processes running
[2025-11-26 13:25:27] 2025-11-26 18:25:26,358 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 13:25:27] 2025-11-26 18:25:26,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 13:25:27] 2025-11-26 18:25:26,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 13:25:27] 2025-11-26 18:25:26,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 13:25:27] 2025-11-26 18:25:26,359 | INFO     | [monitor] control thread has ended
[2025-11-26 13:25:27] 2025-11-26 18:25:26,905 [wrapper] ==== pilot stdout END ====
[2025-11-26 13:25:27] 2025-11-26 18:25:26,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 13:25:27] 2025-11-26 18:25:26,911 [wrapper] pilotpid: 136134
[2025-11-26 13:25:27] 2025-11-26 18:25:26,914 [wrapper] Pilot exit status: 0
[2025-11-26 13:25:27] 2025-11-26 18:25:26,926 [wrapper] pandaids: 6895362758
[2025-11-26 13:25:27] 2025-11-26 18:25:27,074 [wrapper] cleanup supervisor_pilot 3920050 136135
[2025-11-26 13:25:27] 2025-11-26 18:25:27,083 [wrapper] Test setup, not cleaning
[2025-11-26 13:25:27] 2025-11-26 18:25:27,085 [wrapper] apfmon messages muted
[2025-11-26 13:25:27] 2025-11-26 18:25:27,087 [wrapper] ==== wrapper stdout END ====
[2025-11-26 13:25:27] 2025-11-26 18:25:27,090 [wrapper] ==== wrapper stderr END ====
[2025-11-26 13:25:27]  *** Error codes and diagnostics ***
[2025-11-26 13:25:27]     "exeErrorCode": 0,
[2025-11-26 13:25:27]     "exeErrorDiag": "",
[2025-11-26 13:25:27]     "pilotErrorCode": 0,
[2025-11-26 13:25:27]     "pilotErrorDiag": "",
[2025-11-26 13:25:27]  *** Listing of results directory ***
[2025-11-26 13:25:27] total 1335944
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 10:18 pilot3.tar.gz
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:23 queuedata.json
[2025-11-26 13:25:27] -rwx------. 1 boincer umatlas     36292 Nov 23 10:25 runpilot2-wrapper.sh
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 13:25:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:43 run_atlas
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:43 job.xml
[2025-11-26 13:25:27] -rw-r--r--. 2 boincer umatlas 413083149 Nov 25 18:43 EVNT.47483658._000793.pool.root.1
[2025-11-26 13:25:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:43 start_atlas.sh
[2025-11-26 13:25:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:43 shared
[2025-11-26 13:25:27] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 18:43 input.tar.gz
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:43 boinc_lockfile
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 18:43 pandaJob.out
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas        57 Nov 25 18:43 setup.sh.local
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas    991877 Nov 25 18:43 agis_schedconf.cvmfs.json
[2025-11-26 13:25:27] drwx------. 5 boincer umatlas      4096 Nov 25 18:44 pilot3
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas       533 Nov 26 13:14 boinc_task_state.xml
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 13:18 init_data.xml
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas 930604043 Nov 26 13:24 HITS.47556137._007791.pool.root.1
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas      1090 Nov 26 13:24 memory_monitor_summary.json
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas   1516240 Nov 26 13:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas   2181308 Nov 26 13:24 log.47556137._007791.job.log.tgz.1
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas      8637 Nov 26 13:24 heartbeat.json
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas        29 Nov 26 13:25 wrapper_checkpoint.txt
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 13:25 boinc_mmap_file
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas       823 Nov 26 13:25 pilotlog.txt
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas        95 Nov 26 13:25 pilot_heartbeat.json
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas   8018447 Nov 26 13:25 log.47556137._007791.job.log.1
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas       353 Nov 26 13:25 output.list
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas       620 Nov 26 13:25 runtime_log
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas  10219520 Nov 26 13:25 result.tar.gz
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 13:25 runtime_log.err
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas       667 Nov 26 13:25 gLHODmk8Qh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDma0KKDm6QiDRo.diag
[2025-11-26 13:25:27] -rw-r--r--. 1 boincer umatlas     21716 Nov 26 13:25 stderr.txt
[2025-11-26 13:25:27] HITS file was successfully produced:
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas 930604043 Nov 26 13:24 shared/HITS.pool.root.1
[2025-11-26 13:25:27]  *** Contents of shared directory: ***
[2025-11-26 13:25:27] total 1322784
[2025-11-26 13:25:27] -rw-r--r--. 2 boincer umatlas 413083149 Nov 25 18:43 ATLAS.root_0
[2025-11-26 13:25:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:43 start_atlas.sh
[2025-11-26 13:25:27] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 18:43 input.tar.gz
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas 930604043 Nov 26 13:24 HITS.pool.root.1
[2025-11-26 13:25:27] -rw-------. 1 boincer umatlas  10219520 Nov 26 13:25 result.tar.gz
13:25:29 (130528): run_atlas exited; CPU time 198233.370680
13:25:29 (130528): called boinc_finish(0)

</stderr_txt>
]]>

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