Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:55:54 (1321598): wrapper (7.7.26015): starting
17:55:54 (1321598): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:55:54] Arguments: --nthreads 8
[2025-11-25 17:55:54] Threads: 8
[2025-11-25 17:55:54] Checking for CVMFS
[2025-11-25 17:55:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:55:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:55:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:55:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:55:55] 2.13.3.0 12537 29235 378684 153300 2 574 32437361 40960000 32892 16776704 43 167230280 99.713 127970251 37398 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 17:55:55] CVMFS is ok
[2025-11-25 17:55:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:55:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:55:55] Further information can be found at the LHC@home message board.
[2025-11-25 17:55:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:55:55] Checking for apptainer binary...
[2025-11-25 17:55:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:55:55] Running /usr/bin/apptainer --version
[2025-11-25 17:55:55] apptainer version 1.4.4-1.el9
[2025-11-25 17:55:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:55:55] c7-11-14.aglt2.org
[2025-11-25 17:55:55] apptainer works
[2025-11-25 17:55:55] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:55:55] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:55:55] Starting ATLAS job with PandaID=6896298628
[2025-11-25 17:55:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:11 (1321598): BOINC client no longer exists - exiting
20:00:11 (1321598): timer handler: client dead, exiting
20:09:50 (2232528): wrapper (7.7.26015): starting
20:09:50 (2232528): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:09:50] Arguments: --nthreads 8
[2025-11-25 20:09:50] Threads: 8
[2025-11-25 20:09:50] This job has been restarted, cleaning up previous attempt
[2025-11-25 20:09:50] Checking for CVMFS
[2025-11-25 20:09:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:09:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:09:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:09:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:09:50] 2.13.3.0 12537 29369 372528 153303 0 334 35141879 40960000 30226 16776704 43 168796888 99.714 128527479 37370 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:09:50] CVMFS is ok
[2025-11-25 20:09:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:09:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:09:50] Further information can be found at the LHC@home message board.
[2025-11-25 20:09:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:09:50] Checking for apptainer binary...
[2025-11-25 20:09:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:09:50] Running /usr/bin/apptainer --version
[2025-11-25 20:09:50] apptainer version 1.4.4-1.el9
[2025-11-25 20:09:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:09:51] c7-11-14.aglt2.org
[2025-11-25 20:09:51] apptainer works
[2025-11-25 20:09:51] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:09:51] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:09:51] Starting ATLAS job with PandaID=6896298628
[2025-11-25 20:09:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:58:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:58:55] 2025-11-26 16:58:20,132 | INFO     | monitor loop #3820: job 0:6896298628 is in state 'finished'
[2025-11-26 11:58:55] 2025-11-26 16:58:20,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,320 | INFO     | time since job start (56901s) is within the limit (172800.0s)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,639 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 11:58:55] 2025-11-26 16:58:21,643 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3289.5871718749995
[2025-11-26 11:58:55] 2025-11-26 16:58:21,653 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896298628/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,654 | INFO     | extracted standard info from prmon json
[2025-11-26 11:58:55] 2025-11-26 16:58:21,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:58:55] 2025-11-26 16:58:21,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:58:55] 2025-11-26 16:58:21,667 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:58:55] 2025-11-26 16:58:21,668 | INFO     | sum of square deviations: 251840544080.28528
[2025-11-26 11:58:55] 2025-11-26 16:58:21,683 | INFO     | sum of deviations: 2112316019652.4548
[2025-11-26 11:58:55] 2025-11-26 16:58:21,683 | INFO     | mean x: 1764147854.7095392
[2025-11-26 11:58:55] 2025-11-26 16:58:21,683 | INFO     | mean y: 2906858.521972133
[2025-11-26 11:58:55] 2025-11-26 16:58:21,683 | INFO     | intersect: -14793907483.455086
[2025-11-26 11:58:55] 2025-11-26 16:58:21,684 | INFO     | chi2: 4.96569571798596
[2025-11-26 11:58:55] 2025-11-26 16:58:21,685 | INFO     | sum of square deviations: 247813544897.75412
[2025-11-26 11:58:55] 2025-11-26 16:58:21,700 | INFO     | sum of deviations: 2403231042317.512
[2025-11-26 11:58:55] 2025-11-26 16:58:21,700 | INFO     | mean x: 1764147702.213362
[2025-11-26 11:58:55] 2025-11-26 16:58:21,701 | INFO     | mean y: 2917868.265086207
[2025-11-26 11:58:55] 2025-11-26 16:58:21,701 | INFO     | intersect: -17105325843.520357
[2025-11-26 11:58:55] 2025-11-26 16:58:21,701 | INFO     | chi2: 2.0881706717747277
[2025-11-26 11:58:55] 2025-11-26 16:58:21,701 | INFO     | current chi2=2.0881706717747277 (change=57.94807434109816 %)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,702 | INFO     | sum of square deviations: 243829652829.62924
[2025-11-26 11:58:55] 2025-11-26 16:58:21,717 | INFO     | sum of deviations: 2435912249183.5205
[2025-11-26 11:58:55] 2025-11-26 16:58:21,717 | INFO     | mean x: 1764147549.716143
[2025-11-26 11:58:55] 2025-11-26 16:58:21,717 | INFO     | mean y: 2919111.8645720477
[2025-11-26 11:58:55] 2025-11-26 16:58:21,717 | INFO     | intersect: -17621305734.665062
[2025-11-26 11:58:55] 2025-11-26 16:58:21,718 | INFO     | chi2: 1.8595200021295564
[2025-11-26 11:58:55] 2025-11-26 16:58:21,718 | INFO     | current chi2=1.8595200021295564 (change=10.949807538999773 %)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,718 | INFO     | right removable region: 922
[2025-11-26 11:58:55] 2025-11-26 16:58:21,719 | INFO     | sum of square deviations: 247813197869.17972
[2025-11-26 11:58:55] 2025-11-26 16:58:21,732 | INFO     | sum of deviations: 1898714907311.2002
[2025-11-26 11:58:55] 2025-11-26 16:58:21,732 | INFO     | mean x: 1764148007.2122846
[2025-11-26 11:58:55] 2025-11-26 16:58:21,732 | INFO     | mean y: 2914932.8771551726
[2025-11-26 11:58:55] 2025-11-26 16:58:21,732 | INFO     | intersect: -13513774851.197899
[2025-11-26 11:58:55] 2025-11-26 16:58:21,733 | INFO     | chi2: 3.306236423585174
[2025-11-26 11:58:55] 2025-11-26 16:58:21,733 | INFO     | current chi2=3.306236423585174 (change=33.418465178809775 %)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,734 | INFO     | sum of square deviations: 243829128718.91647
[2025-11-26 11:58:55] 2025-11-26 16:58:21,747 | INFO     | sum of deviations: 1822049784493.4087
[2025-11-26 11:58:55] 2025-11-26 16:58:21,747 | INFO     | mean x: 1764148159.7128928
[2025-11-26 11:58:55] 2025-11-26 16:58:21,747 | INFO     | mean y: 2917866.763813651
[2025-11-26 11:58:55] 2025-11-26 16:58:21,747 | INFO     | intersect: -13179944210.083475
[2025-11-26 11:58:55] 2025-11-26 16:58:21,748 | INFO     | chi2: 3.2392533475824417
[2025-11-26 11:58:55] 2025-11-26 16:58:21,748 | INFO     | current chi2=3.2392533475824417 (change=2.025961468602354 %)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,748 | INFO     | left removable region: 20
[2025-11-26 11:58:55] 2025-11-26 16:58:21,749 | INFO     | sum of square deviations: 227562587898.53656
[2025-11-26 11:58:55] 2025-11-26 16:58:21,761 | INFO     | sum of deviations: 2021138236277.4622
[2025-11-26 11:58:55] 2025-11-26 16:58:21,762 | INFO     | mean x: 1764148129.2195122
[2025-11-26 11:58:55] 2025-11-26 16:58:21,762 | INFO     | mean y: 2934802.7350332593
[2025-11-26 11:58:55] 2025-11-26 16:58:21,762 | INFO     | intersect: -15665665521.026003
[2025-11-26 11:58:55] 2025-11-26 16:58:21,762 | INFO     | chi2: 0.07531882289790304
[2025-11-26 11:58:55] 2025-11-26 16:58:21,763 | INFO     | current memory leak: 8.88 B/s (using 902 data points, chi2=0.08)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,763 | INFO     | could have reported an average CPU frequency of 3289 MHz (35 samples)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,763 | INFO     | ..............................
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . Timing measurements:
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . get job = 0 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . initial setup = 0 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . payload setup = 6 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . stage-in = 0 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . payload execution = 56865 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . stage-out = 3 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | . log creation = 0 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,764 | INFO     | ..............................
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | 
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | job summary report
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | --------------------------------------------------
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | PanDA job id: 6896298628
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | task id: 47556149
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | errors: (none)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | pilot state: finished 
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | transexitcode: 0
[2025-11-26 11:58:55] 2025-11-26 16:58:21,832 | INFO     | exeerrorcode: 0
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | exeerrordiag: 
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | exitcode: 0
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | exitmsg: OK
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | cpuconsumptiontime: 205978 s
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | nevents: 1000
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | neventsw: 0
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | pid: 2292608
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | pgrp: 2292608
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | corecount: 8
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | event service: False
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 11: 2284610, 56875: 2337241, 56879: 2346235, 56880: 2346419, 56886: 2346665}
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | --------------------------------------------------
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | 
[2025-11-26 11:58:55] 2025-11-26 16:58:21,833 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 11:58:55] 2025-11-26 16:58:21,854 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,854 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,854 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,856 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:58:55] 2025-11-26 16:58:21,856 | INFO     | job 6896298628 has completed (purged errors)
[2025-11-26 11:58:55] 2025-11-26 16:58:21,856 | INFO     | overall cleanup function is called
[2025-11-26 11:58:55] 2025-11-26 16:58:22,878 | INFO     | --- collectZombieJob: --- 10, [2292608]
[2025-11-26 11:58:55] 2025-11-26 16:58:22,878 | INFO     | zombie collector waiting for pid 2292608
[2025-11-26 11:58:55] 2025-11-26 16:58:22,878 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:58:55] 2025-11-26 16:58:22,878 | INFO     | collected zombie processes
[2025-11-26 11:58:55] 2025-11-26 16:58:22,878 | INFO     | will attempt to kill all subprocesses of pid=2292608
[2025-11-26 11:58:55] 2025-11-26 16:58:23,503 | INFO     | process IDs to be killed: [2292608] (in reverse order)
[2025-11-26 11:58:55] 2025-11-26 16:58:23,733 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:58:55] 2025-11-26 16:58:23,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:58:55] 2025-11-26 16:58:23,756 | INFO     | did not find any defunct processes belonging to 2292608
[2025-11-26 11:58:55] 2025-11-26 16:58:23,778 | INFO     | did not find any defunct processes belonging to 2292608
[2025-11-26 11:58:55] 2025-11-26 16:58:23,779 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:58:55] 2025-11-26 16:58:23,779 | INFO     | ready for new job
[2025-11-26 11:58:55] 2025-11-26 16:58:23,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:58:55] 2025-11-26 16:58:23,784 | INFO     | ***************************************
[2025-11-26 11:58:55] 2025-11-26 16:58:23,784 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:58:55] 2025-11-26 16:58:23,784 | INFO     | ***************************************
[2025-11-26 11:58:55] 2025-11-26 16:58:23,784 | INFO     | 
[2025-11-26 11:58:55] 2025-11-26 16:58:23,787 | INFO     | architecture information:
[2025-11-26 11:58:55] 2025-11-26 16:58:23,788 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:58:55] 2025-11-26 16:58:23,805 | INFO     | cat /etc/os-release:
[2025-11-26 11:58:55] NAME="CentOS Linux"
[2025-11-26 11:58:55] VERSION="7 (Core)"
[2025-11-26 11:58:55] ID="centos"
[2025-11-26 11:58:55] ID_LIKE="rhel fedora"
[2025-11-26 11:58:55] VERSION_ID="7"
[2025-11-26 11:58:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:58:55] ANSI_COLOR="0;31"
[2025-11-26 11:58:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:58:55] HOME_URL="https://www.centos.org/"
[2025-11-26 11:58:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:58:55] 
[2025-11-26 11:58:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:58:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:58:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:58:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:58:55] 
[2025-11-26 11:58:55] 2025-11-26 16:58:23,805 | INFO     | ***************************************
[2025-11-26 11:58:55] 2025-11-26 16:58:24,315 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 11:58:55] 2025-11-26 16:58:24,350 | INFO     | sufficient remaining disk space (79318482944 B)
[2025-11-26 11:58:55] 2025-11-26 16:58:24,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:58:55] 2025-11-26 16:58:24,350 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:58:55] 2025-11-26 16:58:24,351 | INFO     | update_server=False
[2025-11-26 11:58:55] 2025-11-26 16:58:24,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:58:55] 2025-11-26 16:58:24,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:58:55] 2025-11-26 16:58:24,351 | INFO     | aborting loop
[2025-11-26 11:58:55] 2025-11-26 16:58:24,415 | INFO     | all job control threads have been joined
[2025-11-26 11:58:55] 2025-11-26 16:58:25,155 | INFO     | all data control threads have been joined
[2025-11-26 11:58:55] 2025-11-26 16:58:25,343 | INFO     | all payload control threads have been joined
[2025-11-26 11:58:55] 2025-11-26 16:58:25,356 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:25,357 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:25,368 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:25,423 | INFO     | [job] control thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:25,648 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:25,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:58:55] 2025-11-26 16:58:25,878 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,016 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,077 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,164 | INFO     | [data] control thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,364 | INFO     | [payload] control thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,373 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,594 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,676 | INFO     | [job] validate thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:26,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:58:55] 2025-11-26 16:58:26,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:58:55] 2025-11-26 16:58:27,768 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:27,850 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:31,000 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:58:55] 2025-11-26 16:58:37,015 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:58:55] 2025-11-26 16:58:38,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139772183103296)>', '<ExcThread(monitor, started 139771707905792)>']
[2025-11-26 11:58:55] 2025-11-26 16:58:43,900 | INFO     | all workflow threads have been joined
[2025-11-26 11:58:55] 2025-11-26 16:58:43,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:58:55] 2025-11-26 16:58:43,900 | INFO     | traces error code: 0
[2025-11-26 11:58:55] 2025-11-26 16:58:43,901 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:58:55] 2025-11-26 16:58:54,946 | INFO     | PID=2246216 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:58:55] 2025-11-26 16:58:54,947 | INFO     | .. there are 51 such processes running
[2025-11-26 11:58:55] 2025-11-26 16:58:54,947 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:58:55] 2025-11-26 16:58:54,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:58:55] 2025-11-26 16:58:54,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:58:55] 2025-11-26 16:58:54,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:58:55] 2025-11-26 16:58:54,947 | INFO     | [monitor] control thread has ended
[2025-11-26 11:58:55] 2025-11-26 16:58:55,059 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:58:55] 2025-11-26 16:58:55,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:58:55] 2025-11-26 16:58:55,064 [wrapper] pilotpid: 2246216
[2025-11-26 11:58:55] 2025-11-26 16:58:55,068 [wrapper] Pilot exit status: 0
[2025-11-26 11:58:55] 2025-11-26 16:58:55,080 [wrapper] pandaids: 6896298628 6896298628
[2025-11-26 11:58:55] 2025-11-26 16:58:55,207 [wrapper] cleanup supervisor_pilot 3560490 2246217
[2025-11-26 11:58:55] 2025-11-26 16:58:55,210 [wrapper] Test setup, not cleaning
[2025-11-26 11:58:55] 2025-11-26 16:58:55,214 [wrapper] apfmon messages muted
[2025-11-26 11:58:55] 2025-11-26 16:58:55,217 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:58:55] 2025-11-26 16:58:55,220 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:58:55]  *** Error codes and diagnostics ***
[2025-11-26 11:58:55]     "exeErrorCode": 0,
[2025-11-26 11:58:55]     "exeErrorDiag": "",
[2025-11-26 11:58:55]     "pilotErrorCode": 0,
[2025-11-26 11:58:55]     "pilotErrorDiag": "",
[2025-11-26 11:58:55]  *** Listing of results directory ***
[2025-11-26 11:58:55] total 1730392
[2025-11-26 11:58:55] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 21:13 pilot3.tar.gz
[2025-11-26 11:58:55] -rwx------. 1 boincer umatlas     36292 Nov 24 21:38 runpilot2-wrapper.sh
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 21:38 queuedata.json
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas       100 Nov 25 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:58:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 17:55 run_atlas
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas       105 Nov 25 17:55 job.xml
[2025-11-26 11:58:55] -rw-r--r--. 3 boincer umatlas 410956037 Nov 25 17:55 EVNT.47483658._001480.pool.root.1
[2025-11-26 11:58:55] -rw-r--r--. 3 boincer umatlas 410956037 Nov 25 17:55 ATLAS.root_0
[2025-11-26 11:58:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:55 start_atlas.sh
[2025-11-26 11:58:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 17:55 shared
[2025-11-26 11:58:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 17:55 input.tar.gz
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas         0 Nov 25 17:55 boinc_lockfile
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 20:09 pandaJob.out
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas        57 Nov 25 20:09 setup.sh.local
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas    991877 Nov 25 20:09 agis_schedconf.cvmfs.json
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas      6904 Nov 26 11:49 init_data.xml
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas       532 Nov 26 11:50 boinc_task_state.xml
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas 926296212 Nov 26 11:57 HITS.47556149._004669.pool.root.1
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas        96 Nov 26 11:57 pilot_heartbeat.json
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas      1059 Nov 26 11:58 memory_monitor_summary.json
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas   1516240 Nov 26 11:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas   2139882 Nov 26 11:58 log.47556149._004669.job.log.tgz.1
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas      8590 Nov 26 11:58 heartbeat.json
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 11:58 boinc_mmap_file
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas        29 Nov 26 11:58 wrapper_checkpoint.txt
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas       823 Nov 26 11:58 pilotlog.txt
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas   7750803 Nov 26 11:58 log.47556149._004669.job.log.1
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas       353 Nov 26 11:58 output.list
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas       620 Nov 26 11:58 runtime_log
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas   9912320 Nov 26 11:58 result.tar.gz
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas      9428 Nov 26 11:58 runtime_log.err
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas       788 Nov 26 11:58 JjFLDmo7xh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq3LKDmMhPmGm.diag
[2025-11-26 11:58:55] -rw-r--r--. 1 boincer umatlas     23639 Nov 26 11:58 stderr.txt
[2025-11-26 11:58:55] HITS file was successfully produced:
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas 926296212 Nov 26 11:57 shared/HITS.pool.root.1
[2025-11-26 11:58:55]  *** Contents of shared directory: ***
[2025-11-26 11:58:55] total 1316200
[2025-11-26 11:58:55] -rw-r--r--. 3 boincer umatlas 410956037 Nov 25 17:55 ATLAS.root_0
[2025-11-26 11:58:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:55 start_atlas.sh
[2025-11-26 11:58:55] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 17:55 input.tar.gz
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas 926296212 Nov 26 11:57 HITS.pool.root.1
[2025-11-26 11:58:55] -rw-------. 1 boincer umatlas   9912320 Nov 26 11:58 result.tar.gz
11:58:56 (2232528): run_atlas exited; CPU time 206198.853045
11:58:56 (2232528): called boinc_finish(0)

</stderr_txt>
]]>

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