Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:58:53 (1850523): wrapper (7.7.26015): starting
22:58:53 (1850523): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 22:58:53] Arguments: --nthreads 3
[2025-11-25 22:58:53] Threads: 3
[2025-11-25 22:58:53] Checking for CVMFS
[2025-11-25 22:58:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:58:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:58:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:58:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:58:53] 2.9.2.0 1308651 116 65708 153298 3 88 35383379 36864001 0 130560 0 1627769 99.999 5362 4691 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 22:58:53] CVMFS is ok
[2025-11-25 22:58:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:58:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:58:53] Further information can be found at the LHC@home message board.
[2025-11-25 22:58:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:58:53] Checking for apptainer binary...
[2025-11-25 22:58:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:58:53] Running /usr/bin/apptainer --version
[2025-11-25 22:58:53] apptainer version 1.4.1-1.1
[2025-11-25 22:58:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:58:53] thA335
[2025-11-25 22:58:53] apptainer works
[2025-11-25 22:58:53] Set ATHENA_PROC_NUMBER=3
[2025-11-25 22:58:53] Set ATHENA_CORE_NUMBER=3
[2025-11-25 22:58:53] Starting ATLAS job with PandaID=6896298623
[2025-11-25 22:58:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:03:12]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:03:12] 2025-11-25 22:02:20,546 | INFO     | update_server=False
[2025-11-25 23:03:12] 2025-11-25 22:02:20,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:03:12] 2025-11-25 22:02:20,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:03:12] 2025-11-25 22:02:20,592 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:03:12] 2025-11-25 22:02:20,786 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 23:03:12] 2025-11-25 22:02:20,786 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 23:03:12] 2025-11-25 22:02:20,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:03:12] 2025-11-25 22:02:20,788 | INFO     | will abort loop
[2025-11-25 23:03:12] 2025-11-25 22:02:21,042 | INFO     | all data control threads have been joined
[2025-11-25 23:03:12] 2025-11-25 22:02:21,347 | INFO     | all payload control threads have been joined
[2025-11-25 23:03:12] 2025-11-25 22:02:21,552 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:21,552 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:21,793 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:21,933 | INFO     | all job control threads have been joined
[2025-11-25 23:03:12] 2025-11-25 22:02:21,964 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,002 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,048 | INFO     | [data] control thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,139 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,335 | INFO     | [job] validate thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,353 | INFO     | [payload] control thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,419 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,477 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,490 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,598 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,630 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:22,938 | INFO     | [job] control thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:23,009 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:03:12] 2025-11-25 22:02:27,017 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:03:12] 2025-11-25 22:02:50,815 | INFO     | PID=1854270 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:03:12] 2025-11-25 22:02:50,815 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:03:12] 2025-11-25 22:02:50,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:03:12] 2025-11-25 22:02:50,815 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:03:12] 2025-11-25 22:03:05,476 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:03:12] 2025-11-25 22:03:06,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140141202650944)>', '<ExcThread(monitor, started 140140353681152)>']
[2025-11-25 23:03:12] 2025-11-25 22:03:06,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:03:12] 2025-11-25 22:03:06,901 | INFO     | [monitor] control thread has ended
[2025-11-25 23:03:12] 2025-11-25 22:03:11,908 | INFO     | all workflow threads have been joined
[2025-11-25 23:03:12] 2025-11-25 22:03:11,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:03:12] 2025-11-25 22:03:11,909 | INFO     | traces error code: 0
[2025-11-25 23:03:12] 2025-11-25 22:03:11,909 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:03:12] 2025-11-25 22:03:11,954 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:03:12] 2025-11-25 22:03:11,958 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:03:12] 2025-11-25 22:03:11,961 [wrapper] pilotpid: 1854270
[2025-11-25 23:03:12] 2025-11-25 22:03:11,964 [wrapper] Pilot exit status: 0
[2025-11-25 23:03:12] 2025-11-25 22:03:11,971 [wrapper] pandaids: 6896298623
[2025-11-25 23:03:12] 2025-11-25 22:03:11,987 [wrapper] cleanup supervisor_pilot 1854276 1854271
[2025-11-25 23:03:12] 2025-11-25 22:03:11,990 [wrapper] Test setup, not cleaning
[2025-11-25 23:03:12] 2025-11-25 22:03:11,993 [wrapper] apfmon messages muted
[2025-11-25 23:03:12] 2025-11-25 22:03:11,996 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:03:12] 2025-11-25 22:03:11,999 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:03:12]  *** Error codes and diagnostics ***
[2025-11-25 23:03:12]     "exeErrorCode": 65,
[2025-11-25 23:03:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 23:03:12]     "pilotErrorCode": 1305,
[2025-11-25 23:03:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 23:03:12]  *** Listing of results directory ***
[2025-11-25 23:03:12] total 405424
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc    576529 Nov 25 03:13 pilot3.tar.gz
[2025-11-25 23:03:12] -rwx------ 1 boinc boinc     36292 Nov 25 03:29 runpilot2-wrapper.sh
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc      5112 Nov 25 03:29 queuedata.json
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc       100 Nov 25 22:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:03:12] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:58 run_atlas
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc       105 Nov 25 22:58 job.xml
[2025-11-25 23:03:12] -rw-r--r-- 2 boinc boinc 410956037 Nov 25 22:58 EVNT.47483658._001480.pool.root.1
[2025-11-25 23:03:12] -rw-r--r-- 2 boinc boinc    590101 Nov 25 22:58 input.tar.gz
[2025-11-25 23:03:12] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:58 start_atlas.sh
[2025-11-25 23:03:12] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:58 shared
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:58 boinc_setup_complete
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc      6196 Nov 25 22:58 init_data.xml
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:58 boinc_lockfile
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc      2785 Nov 25 22:58 pandaJob.out
[2025-11-25 23:03:12] -rw------- 1 boinc boinc    991893 Nov 25 22:59 agis_schedconf.cvmfs.json
[2025-11-25 23:03:12] -rw------- 1 boinc boinc   1516240 Nov 25 22:59 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:03:12] drwx------ 5 boinc boinc      4096 Nov 25 22:59 pilot3
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc       522 Nov 25 23:00 boinc_task_state.xml
[2025-11-25 23:03:12] -rw------- 1 boinc boinc       952 Nov 25 23:00 memory_monitor_summary.json
[2025-11-25 23:03:12] -rw------- 1 boinc boinc     56084 Nov 25 23:00 log.47556149._004664.job.log.tgz.1
[2025-11-25 23:03:12] -rw------- 1 boinc boinc        95 Nov 25 23:02 pilot_heartbeat.json
[2025-11-25 23:03:12] -rw------- 1 boinc boinc      8401 Nov 25 23:02 heartbeat.json
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc      8192 Nov 25 23:03 boinc_mmap_file
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc        22 Nov 25 23:03 wrapper_checkpoint.txt
[2025-11-25 23:03:12] -rw------- 1 boinc boinc      4938 Nov 25 23:03 pilotlog.txt
[2025-11-25 23:03:12] -rw------- 1 boinc boinc     93638 Nov 25 23:03 log.47556149._004664.job.log.1
[2025-11-25 23:03:12] -rw------- 1 boinc boinc       186 Nov 25 23:03 output.list
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc       620 Nov 25 23:03 runtime_log
[2025-11-25 23:03:12] -rw------- 1 boinc boinc    174080 Nov 25 23:03 result.tar.gz
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc      8744 Nov 25 23:03 runtime_log.err
[2025-11-25 23:03:12] -rw------- 1 boinc boinc       649 Nov 25 23:03 fg5KDmtyxh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgHJKDmTjiqkn.diag
[2025-11-25 23:03:12] -rw-r--r-- 1 boinc boinc      8018 Nov 25 23:03 stderr.txt
[2025-11-25 23:03:12] No HITS result produced
[2025-11-25 23:03:12]  *** Contents of shared directory: ***
[2025-11-25 23:03:12] total 402100
[2025-11-25 23:03:12] -rw-r--r-- 2 boinc boinc 410956037 Nov 25 22:58 ATLAS.root_0
[2025-11-25 23:03:12] -rw-r--r-- 2 boinc boinc    590101 Nov 25 22:58 input.tar.gz
[2025-11-25 23:03:12] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:58 start_atlas.sh
[2025-11-25 23:03:12] -rw------- 1 boinc boinc    174080 Nov 25 23:03 result.tar.gz
23:03:13 (1850523): run_atlas exited; CPU time 31.979538
23:03:13 (1850523): called boinc_finish(0)

</stderr_txt>
]]>

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