Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:01:55 (634596): wrapper (7.7.26015): starting
19:01:55 (634596): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:01:55] Arguments: --nthreads 8
[2025-11-25 19:01:55] Threads: 8
[2025-11-25 19:01:55] Checking for CVMFS
[2025-11-25 19:01:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:01:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:01:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:01:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:01:56] 2.13.3.0 11771 29258 232712 153302 3 452 21736117 32935937 38562 16776704 0 206811265 99.599 215271628 38513 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:01:56] CVMFS is ok
[2025-11-25 19:01:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:01:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:01:56] Further information can be found at the LHC@home message board.
[2025-11-25 19:01:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:01:56] Checking for apptainer binary...
[2025-11-25 19:01:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:01:56] Running /usr/bin/apptainer --version
[2025-11-25 19:01:56] apptainer version 1.4.4-1.el9
[2025-11-25 19:01:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:01:56] c7-2-14.aglt2.org
[2025-11-25 19:01:56] apptainer works
[2025-11-25 19:01:56] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:01:56] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:01:56] Starting ATLAS job with PandaID=6896298605
[2025-11-25 19:01:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:27:11]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:27:11] 2025-11-26 15:26:35,508 | INFO     | PID=639262 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:27:11] 2025-11-26 15:26:35,508 | INFO     | .. there are 61 such processes running
[2025-11-26 10:27:11] 2025-11-26 15:26:35,904 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 10:27:11] 2025-11-26 15:26:35,910 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3212.8824999999997
[2025-11-26 10:27:11] 2025-11-26 15:26:35,926 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896298605/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:27:11] 2025-11-26 15:26:35,926 | INFO     | extracted standard info from prmon json
[2025-11-26 10:27:11] 2025-11-26 15:26:35,927 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:27:11] 2025-11-26 15:26:35,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:27:11] 2025-11-26 15:26:35,951 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:27:11] 2025-11-26 15:26:35,953 | INFO     | sum of square deviations: 232896891137.70325
[2025-11-26 10:27:11] 2025-11-26 15:26:35,988 | INFO     | sum of deviations: 979089770804.9519
[2025-11-26 10:27:11] 2025-11-26 15:26:35,988 | INFO     | mean x: 1764143053.1254125
[2025-11-26 10:27:11] 2025-11-26 15:26:35,988 | INFO     | mean y: 2884221.4653465347
[2025-11-26 10:27:11] 2025-11-26 15:26:35,988 | INFO     | intersect: -7413506822.288206
[2025-11-26 10:27:11] 2025-11-26 15:26:35,989 | INFO     | chi2: 9.112649800378538
[2025-11-26 10:27:11] 2025-11-26 15:26:35,990 | INFO     | sum of square deviations: 229075066366.33502
[2025-11-26 10:27:11] 2025-11-26 15:26:36,029 | INFO     | sum of deviations: 1299662458757.9583
[2025-11-26 10:27:11] 2025-11-26 15:26:36,029 | INFO     | mean x: 1764142900.631637
[2025-11-26 10:27:11] 2025-11-26 15:26:36,029 | INFO     | mean y: 2897010.777654867
[2025-11-26 10:27:11] 2025-11-26 15:26:36,029 | INFO     | intersect: -10006006778.728174
[2025-11-26 10:27:11] 2025-11-26 15:26:36,036 | INFO     | chi2: 5.635291734181172
[2025-11-26 10:27:11] 2025-11-26 15:26:36,036 | INFO     | current chi2=5.635291734181172 (change=38.159680689725576 %)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,037 | INFO     | sum of square deviations: 225295288894.89667
[2025-11-26 10:27:11] 2025-11-26 15:26:36,159 | INFO     | sum of deviations: 1613478944957.9302
[2025-11-26 10:27:11] 2025-11-26 15:26:36,160 | INFO     | mean x: 1764142748.137931
[2025-11-26 10:27:11] 2025-11-26 15:26:36,160 | INFO     | mean y: 2909665.4360400443
[2025-11-26 10:27:11] 2025-11-26 15:26:36,160 | INFO     | intersect: -12631207958.51774
[2025-11-26 10:27:11] 2025-11-26 15:26:36,161 | INFO     | chi2: 2.280996949605401
[2025-11-26 10:27:11] 2025-11-26 15:26:36,161 | INFO     | current chi2=2.280996949605401 (change=59.523001519692606 %)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,164 | INFO     | sum of square deviations: 221557216971.45868
[2025-11-26 10:27:11] 2025-11-26 15:26:36,207 | INFO     | sum of deviations: 1657065212043.5125
[2025-11-26 10:27:11] 2025-11-26 15:26:36,207 | INFO     | mean x: 1764142595.6420581
[2025-11-26 10:27:11] 2025-11-26 15:26:36,207 | INFO     | mean y: 2911438.917225951
[2025-11-26 10:27:11] 2025-11-26 15:26:36,208 | INFO     | intersect: -13191419868.73403
[2025-11-26 10:27:11] 2025-11-26 15:26:36,216 | INFO     | chi2: 2.1043705846654808
[2025-11-26 10:27:11] 2025-11-26 15:26:36,216 | INFO     | current chi2=2.1043705846654808 (change=7.743384530631466 %)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,216 | INFO     | right removable region: 893
[2025-11-26 10:27:11] 2025-11-26 15:26:36,217 | INFO     | sum of square deviations: 229074442336.3352
[2025-11-26 10:27:11] 2025-11-26 15:26:36,314 | INFO     | sum of deviations: 765853086184.855
[2025-11-26 10:27:11] 2025-11-26 15:26:36,315 | INFO     | mean x: 1764143205.631637
[2025-11-26 10:27:11] 2025-11-26 15:26:36,315 | INFO     | mean y: 2892712.774336283
[2025-11-26 10:27:11] 2025-11-26 15:26:36,315 | INFO     | intersect: -5895078727.100817
[2025-11-26 10:27:11] 2025-11-26 15:26:36,316 | INFO     | chi2: 7.231824932649708
[2025-11-26 10:27:11] 2025-11-26 15:26:36,316 | INFO     | current chi2=7.231824932649708 (change=20.639714121908874 %)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,316 | INFO     | left removable region: 10
[2025-11-26 10:27:11] 2025-11-26 15:26:36,321 | INFO     | sum of square deviations: 213478602265.6654
[2025-11-26 10:27:11] 2025-11-26 15:26:36,351 | INFO     | sum of deviations: 1403590699542.5183
[2025-11-26 10:27:11] 2025-11-26 15:26:36,355 | INFO     | mean x: 1764142870.1517553
[2025-11-26 10:27:11] 2025-11-26 15:26:36,356 | INFO     | mean y: 2921534.2797281994
[2025-11-26 10:27:11] 2025-11-26 15:26:36,356 | INFO     | intersect: -11596060747.456406
[2025-11-26 10:27:11] 2025-11-26 15:26:36,356 | INFO     | chi2: 0.17229200478062065
[2025-11-26 10:27:11] 2025-11-26 15:26:36,357 | INFO     | current memory leak: 6.57 B/s (using 883 data points, chi2=0.17)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,357 | INFO     | could have reported an average CPU frequency of 3243 MHz (34 samples)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | ..............................
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . Timing measurements:
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . get job = 0 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . initial setup = 2 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . payload setup = 6 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . stage-in = 0 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . payload execution = 55417 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . stage-out = 6 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | . log creation = 1 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,358 | INFO     | ..............................
[2025-11-26 10:27:11] 2025-11-26 15:26:36,515 | INFO     | time since job start (55467s) is within the limit (172800.0s)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | 
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | job summary report
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | --------------------------------------------------
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | PanDA job id: 6896298605
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | task id: 47556149
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | errors: (none)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | pilot state: finished 
[2025-11-26 10:27:11] 2025-11-26 15:26:36,527 | INFO     | transexitcode: 0
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | exeerrorcode: 0
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | exeerrordiag: 
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | exitcode: 0
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | exitmsg: OK
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | cpuconsumptiontime: 194270 s
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | nevents: 1000
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | neventsw: 0
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | pid: 647143
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | pgrp: 647143
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | corecount: 8
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | event service: False
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | sizes: {0: 2284093, 1: 2284292, 6: 2284554, 11: 2284582, 55428: 2335904, 55435: 2345082, 55451: 2345272}
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | --------------------------------------------------
[2025-11-26 10:27:11] 2025-11-26 15:26:36,528 | INFO     | 
[2025-11-26 10:27:11] 2025-11-26 15:26:36,529 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 10:27:11] 2025-11-26 15:26:36,614 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,614 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,614 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,614 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,619 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:27:11] 2025-11-26 15:26:36,620 | INFO     | job 6896298605 has completed (purged errors)
[2025-11-26 10:27:11] 2025-11-26 15:26:36,620 | INFO     | overall cleanup function is called
[2025-11-26 10:27:11] 2025-11-26 15:26:37,650 | INFO     | --- collectZombieJob: --- 10, [647143]
[2025-11-26 10:27:11] 2025-11-26 15:26:37,650 | INFO     | zombie collector waiting for pid 647143
[2025-11-26 10:27:11] 2025-11-26 15:26:37,650 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:27:11] 2025-11-26 15:26:37,650 | INFO     | collected zombie processes
[2025-11-26 10:27:11] 2025-11-26 15:26:37,650 | INFO     | will attempt to kill all subprocesses of pid=647143
[2025-11-26 10:27:11] 2025-11-26 15:26:38,771 | INFO     | process IDs to be killed: [647143] (in reverse order)
[2025-11-26 10:27:11] 2025-11-26 15:26:39,143 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:27:11] 2025-11-26 15:26:39,144 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:27:11] 2025-11-26 15:26:39,200 | INFO     | did not find any defunct processes belonging to 647143
[2025-11-26 10:27:11] 2025-11-26 15:26:39,257 | INFO     | did not find any defunct processes belonging to 647143
[2025-11-26 10:27:11] 2025-11-26 15:26:39,266 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:27:11] 2025-11-26 15:26:39,266 | INFO     | ready for new job
[2025-11-26 10:27:11] 2025-11-26 15:26:39,266 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:27:11] 2025-11-26 15:26:39,270 | INFO     | ***************************************
[2025-11-26 10:27:11] 2025-11-26 15:26:39,270 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:27:11] 2025-11-26 15:26:39,279 | INFO     | ***************************************
[2025-11-26 10:27:11] 2025-11-26 15:26:39,279 | INFO     | 
[2025-11-26 10:27:11] 2025-11-26 15:26:39,291 | INFO     | architecture information:
[2025-11-26 10:27:11] 2025-11-26 15:26:39,296 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:27:11] 2025-11-26 15:26:39,399 | INFO     | cat /etc/os-release:
[2025-11-26 10:27:11] NAME="CentOS Linux"
[2025-11-26 10:27:11] VERSION="7 (Core)"
[2025-11-26 10:27:11] ID="centos"
[2025-11-26 10:27:11] ID_LIKE="rhel fedora"
[2025-11-26 10:27:11] VERSION_ID="7"
[2025-11-26 10:27:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:27:11] ANSI_COLOR="0;31"
[2025-11-26 10:27:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:27:11] HOME_URL="https://www.centos.org/"
[2025-11-26 10:27:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:27:11] 
[2025-11-26 10:27:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:27:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:27:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:27:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:27:11] 
[2025-11-26 10:27:11] 2025-11-26 15:26:39,399 | INFO     | ***************************************
[2025-11-26 10:27:11] 2025-11-26 15:26:39,903 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 10:27:11] 2025-11-26 15:26:39,977 | INFO     | sufficient remaining disk space (67592257536 B)
[2025-11-26 10:27:11] 2025-11-26 15:26:39,977 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:27:11] 2025-11-26 15:26:39,977 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:27:11] 2025-11-26 15:26:39,978 | INFO     | update_server=False
[2025-11-26 10:27:11] 2025-11-26 15:26:39,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:27:11] 2025-11-26 15:26:39,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:27:11] 2025-11-26 15:26:40,130 | INFO     | all data control threads have been joined
[2025-11-26 10:27:11] 2025-11-26 15:26:40,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:27:11] 2025-11-26 15:26:40,179 | INFO     | aborting loop
[2025-11-26 10:27:11] 2025-11-26 15:26:40,290 | INFO     | all job control threads have been joined
[2025-11-26 10:27:11] 2025-11-26 15:26:40,391 | INFO     | all payload control threads have been joined
[2025-11-26 10:27:11] 2025-11-26 15:26:40,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:27:11] 2025-11-26 15:26:40,984 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,118 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,136 | INFO     | [data] control thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,185 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,296 | INFO     | [job] control thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,398 | INFO     | [payload] control thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,413 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,413 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,552 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:27:11] 2025-11-26 15:26:41,660 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,856 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:41,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:42,176 | INFO     | [job] validate thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:42,564 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:42,751 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:43,987 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:27:11] 2025-11-26 15:26:47,840 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:27:11] 2025-11-26 15:26:49,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140654900700992)>', '<ExcThread(monitor, started 140654273361664)>']
[2025-11-26 10:27:11] 2025-11-26 15:26:54,082 | INFO     | all workflow threads have been joined
[2025-11-26 10:27:11] 2025-11-26 15:26:54,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:27:11] 2025-11-26 15:26:54,082 | INFO     | traces error code: 0
[2025-11-26 10:27:11] 2025-11-26 15:26:54,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:27:11] 2025-11-26 15:27:10,924 | INFO     | PID=639262 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 10:27:11] 2025-11-26 15:27:10,927 | INFO     | .. there are 61 such processes running
[2025-11-26 10:27:11] 2025-11-26 15:27:10,927 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:27:11] 2025-11-26 15:27:10,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:27:11] 2025-11-26 15:27:10,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:27:11] 2025-11-26 15:27:10,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:27:11] 2025-11-26 15:27:10,927 | INFO     | [monitor] control thread has ended
[2025-11-26 10:27:11] 2025-11-26 15:27:11,408 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:27:11] 2025-11-26 15:27:11,413 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:27:11] 2025-11-26 15:27:11,416 [wrapper] pilotpid: 639262
[2025-11-26 10:27:11] 2025-11-26 15:27:11,418 [wrapper] Pilot exit status: 0
[2025-11-26 10:27:11] 2025-11-26 15:27:11,432 [wrapper] pandaids: 6896298605
[2025-11-26 10:27:11] 2025-11-26 15:27:11,572 [wrapper] cleanup supervisor_pilot 2172445 639263
[2025-11-26 10:27:11] 2025-11-26 15:27:11,575 [wrapper] Test setup, not cleaning
[2025-11-26 10:27:11] 2025-11-26 15:27:11,577 [wrapper] apfmon messages muted
[2025-11-26 10:27:11] 2025-11-26 15:27:11,585 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:27:11] 2025-11-26 15:27:11,587 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:27:11]  *** Error codes and diagnostics ***
[2025-11-26 10:27:11]     "exeErrorCode": 0,
[2025-11-26 10:27:11]     "exeErrorDiag": "",
[2025-11-26 10:27:11]     "pilotErrorCode": 0,
[2025-11-26 10:27:11]     "pilotErrorDiag": "",
[2025-11-26 10:27:11]  *** Listing of results directory ***
[2025-11-26 10:27:11] total 1334600
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 20:13 pilot3.tar.gz
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:56 queuedata.json
[2025-11-26 10:27:11] -rwx------. 1 boincer umatlas     36292 Nov 24 20:59 runpilot2-wrapper.sh
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:27:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:01 run_atlas
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:01 job.xml
[2025-11-26 10:27:11] -rw-r--r--. 2 boincer umatlas 412260347 Nov 25 19:01 EVNT.47483658._001478.pool.root.1
[2025-11-26 10:27:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:01 start_atlas.sh
[2025-11-26 10:27:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:01 shared
[2025-11-26 10:27:11] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 19:01 input.tar.gz
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:01 boinc_lockfile
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 19:01 pandaJob.out
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas        57 Nov 25 19:01 setup.sh.local
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas    991877 Nov 25 19:02 agis_schedconf.cvmfs.json
[2025-11-26 10:27:11] drwx------. 5 boincer umatlas      4096 Nov 25 19:02 pilot3
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas       532 Nov 26 10:12 boinc_task_state.xml
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 10:19 init_data.xml
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas 932469504 Nov 26 10:24 HITS.47556149._004646.pool.root.1
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas      1069 Nov 26 10:26 memory_monitor_summary.json
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:26 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas   2061488 Nov 26 10:26 log.47556149._004646.job.log.tgz.1
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas        95 Nov 26 10:26 pilot_heartbeat.json
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas      8632 Nov 26 10:26 heartbeat.json
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas        29 Nov 26 10:27 wrapper_checkpoint.txt
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:27 boinc_mmap_file
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas       822 Nov 26 10:27 pilotlog.txt
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas   6927280 Nov 26 10:27 log.47556149._004646.job.log.1
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas       353 Nov 26 10:27 output.list
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:27 runtime_log
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas   9011200 Nov 26 10:27 result.tar.gz
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 10:27 runtime_log.err
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas       663 Nov 26 10:27 HnpLDm3Vxh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi3LKDmABMk7n.diag
[2025-11-26 10:27:11] -rw-r--r--. 1 boincer umatlas     21377 Nov 26 10:27 stderr.txt
[2025-11-26 10:27:11] HITS file was successfully produced:
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas 932469504 Nov 26 10:24 shared/HITS.pool.root.1
[2025-11-26 10:27:11]  *** Contents of shared directory: ***
[2025-11-26 10:27:11] total 1322620
[2025-11-26 10:27:11] -rw-r--r--. 2 boincer umatlas 412260347 Nov 25 19:01 ATLAS.root_0
[2025-11-26 10:27:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:01 start_atlas.sh
[2025-11-26 10:27:11] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 19:01 input.tar.gz
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas 932469504 Nov 26 10:24 HITS.pool.root.1
[2025-11-26 10:27:11] -rw-------. 1 boincer umatlas   9011200 Nov 26 10:27 result.tar.gz
10:27:13 (634596): run_atlas exited; CPU time 195770.172520
10:27:13 (634596): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN