Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:05:47 (24937): wrapper (7.7.26015): starting
23:05:47 (24937): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 23:05:47] Arguments: --nthreads 8
[2025-11-27 23:05:47] Threads: 8
[2025-11-27 23:05:47] Checking for CVMFS
[2025-11-27 23:05:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:05:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:05:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:05:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:05:50] 2.11.2.0 6427 174193 133544 153385 0 85 25128498 25165825 1288 130560 10 56163949 99.885 32266277 2416 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 23:05:50] CVMFS is ok
[2025-11-27 23:05:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:05:50] Checking for apptainer binary...
[2025-11-27 23:05:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 23:05:50] Running /usr/bin/apptainer --version
[2025-11-27 23:05:50] apptainer version 1.3.2-1.el7
[2025-11-27 23:05:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:06:01] cg-vwn308.simple-grid.lan
[2025-11-27 23:06:01] apptainer works
[2025-11-27 23:06:01] Set ATHENA_PROC_NUMBER=8
[2025-11-27 23:06:01] Set ATHENA_CORE_NUMBER=8
[2025-11-27 23:06:01] Starting ATLAS job with PandaID=6896297900
[2025-11-27 23:06:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 21:56:20]  *** The last 200 lines of the pilot log: ***
[2025-11-28 21:56:20] 2025-11-28 20:55:39,225 | INFO     | time since job start (81970s) is within the limit (172800.0s)
[2025-11-28 21:56:20] 2025-11-28 20:55:39,638 | INFO     | monitor loop #5541: job 0:6896297900 is in state 'finished'
[2025-11-28 21:56:20] 2025-11-28 20:55:39,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 21:56:20] 2025-11-28 20:55:41,233 | INFO     | time since job start (81972s) is within the limit (172800.0s)
[2025-11-28 21:56:20] 2025-11-28 20:55:42,145 | INFO     | monitor loop #5542: job 0:6896297900 is in state 'finished'
[2025-11-28 21:56:20] 2025-11-28 20:55:42,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 21:56:20] 2025-11-28 20:55:42,594 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 21:56:20] 2025-11-28 20:55:42,595 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-28 21:56:20] 2025-11-28 20:55:42,596 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6896297900/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 21:56:20] 2025-11-28 20:55:42,597 | INFO     | extracted standard info from prmon json
[2025-11-28 21:56:20] 2025-11-28 20:55:42,597 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 21:56:20] 2025-11-28 20:55:42,597 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 21:56:20] 2025-11-28 20:55:42,647 | INFO     | fitting pss+swap vs Time
[2025-11-28 21:56:20] 2025-11-28 20:55:42,649 | INFO     | sum of square deviations: 736114730562.4291
[2025-11-28 21:56:20] 2025-11-28 20:55:42,734 | INFO     | sum of deviations: 3169180941672.7246
[2025-11-28 21:56:20] 2025-11-28 20:55:42,734 | INFO     | mean x: 1764322548.5824587
[2025-11-28 21:56:20] 2025-11-28 20:55:42,734 | INFO     | mean y: 2843150.8343328335
[2025-11-28 21:56:20] 2025-11-28 20:55:42,734 | INFO     | intersect: -7593061622.948444
[2025-11-28 21:56:20] 2025-11-28 20:55:42,736 | INFO     | chi2: 18.291232927358987
[2025-11-28 21:56:20] 2025-11-28 20:55:42,738 | INFO     | sum of square deviations: 727868997759.0492
[2025-11-28 21:56:20] 2025-11-28 20:55:42,831 | INFO     | sum of deviations: 3607387850567.5776
[2025-11-28 21:56:20] 2025-11-28 20:55:42,832 | INFO     | mean x: 1764322396.0865312
[2025-11-28 21:56:20] 2025-11-28 20:55:42,832 | INFO     | mean y: 2851254.099322799
[2025-11-28 21:56:20] 2025-11-28 20:55:42,832 | INFO     | intersect: -8741298030.623669
[2025-11-28 21:56:20] 2025-11-28 20:55:42,834 | INFO     | chi2: 15.179340728236358
[2025-11-28 21:56:20] 2025-11-28 20:55:42,834 | INFO     | current chi2=15.179340728236358 (change=17.013025920565678 %)
[2025-11-28 21:56:20] 2025-11-28 20:55:42,834 | INFO     | right removable region: 1328
[2025-11-28 21:56:20] 2025-11-28 20:55:42,836 | INFO     | sum of square deviations: 727868116919.0497
[2025-11-28 21:56:20] 2025-11-28 20:55:42,899 | INFO     | sum of deviations: 2614332037074.5337
[2025-11-28 21:56:20] 2025-11-28 20:55:42,899 | INFO     | mean x: 1764322701.0865312
[2025-11-28 21:56:20] 2025-11-28 20:55:42,899 | INFO     | mean y: 2853410.934537246
[2025-11-28 21:56:20] 2025-11-28 20:55:42,899 | INFO     | intersect: -6334181079.204258
[2025-11-28 21:56:20] 2025-11-28 20:55:42,901 | INFO     | chi2: 13.659004861084705
[2025-11-28 21:56:20] 2025-11-28 20:55:42,901 | INFO     | current chi2=13.659004861084705 (change=25.32485417834059 %)
[2025-11-28 21:56:20] 2025-11-28 20:55:42,903 | INFO     | sum of square deviations: 719683318388.125
[2025-11-28 21:56:20] 2025-11-28 20:55:42,955 | INFO     | sum of deviations: 2131613360323.7446
[2025-11-28 21:56:20] 2025-11-28 20:55:42,956 | INFO     | mean x: 1764322853.5906343
[2025-11-28 21:56:20] 2025-11-28 20:55:42,956 | INFO     | mean y: 2862404.414652568
[2025-11-28 21:56:20] 2025-11-28 20:55:42,956 | INFO     | intersect: -5222844612.195787
[2025-11-28 21:56:20] 2025-11-28 20:55:42,957 | INFO     | chi2: 10.269817884921983
[2025-11-28 21:56:20] 2025-11-28 20:55:42,958 | INFO     | current chi2=10.269817884921983 (change=24.812839666077817 %)
[2025-11-28 21:56:20] 2025-11-28 20:55:42,958 | INFO     | left removable region: 20
[2025-11-28 21:56:20] 2025-11-28 20:55:42,959 | INFO     | sum of square deviations: 693906430828.669
[2025-11-28 21:56:20] 2025-11-28 20:55:43,005 | INFO     | sum of deviations: 2336749166987.4746
[2025-11-28 21:56:20] 2025-11-28 20:55:43,005 | INFO     | mean x: 1764322975.5970948
[2025-11-28 21:56:20] 2025-11-28 20:55:43,005 | INFO     | mean y: 2878796.228593272
[2025-11-28 21:56:20] 2025-11-28 20:55:43,005 | INFO     | intersect: -5938527797.452798
[2025-11-28 21:56:20] 2025-11-28 20:55:43,007 | INFO     | chi2: 5.24956791930871
[2025-11-28 21:56:20] 2025-11-28 20:55:43,007 | INFO     | current memory leak: 3.37 B/s (using 1308 data points, chi2=5.25)
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | could have reported an average CPU frequency of 1999 MHz (45 samples)
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | ..............................
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | . Timing measurements:
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | . get job = 0 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | . initial setup = 13 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | . payload setup = 164 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | . stage-in = 0 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,009 | INFO     | . payload execution = 81495 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,010 | INFO     | . stage-out = 5 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,010 | INFO     | . log creation = 2 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,010 | INFO     | ..............................
[2025-11-28 21:56:20] 2025-11-28 20:55:43,120 | INFO     | 
[2025-11-28 21:56:20] 2025-11-28 20:55:43,120 | INFO     | job summary report
[2025-11-28 21:56:20] 2025-11-28 20:55:43,120 | INFO     | --------------------------------------------------
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | PanDA job id: 6896297900
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | task id: 47556149
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | errors: (none)
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | pilot state: finished 
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | transexitcode: 0
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | exeerrorcode: 0
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | exeerrordiag: 
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | exitcode: 0
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | exitmsg: OK
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | cpuconsumptiontime: 313413 s
[2025-11-28 21:56:20] 2025-11-28 20:55:43,121 | INFO     | nevents: 1000
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | neventsw: 0
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | pid: 2940
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | pgrp: 2940
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | corecount: 8
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | event service: False
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 13: 2284371, 23: 2284427, 34: 2284455, 45: 2284611, 55: 2284639, 66: 2284667, 77: 2284695, 88: 2284751, 93: 2285321, 98
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | --------------------------------------------------
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | 
[2025-11-28 21:56:20] 2025-11-28 20:55:43,122 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 21:56:20] 2025-11-28 20:55:43,245 | INFO     | time since job start (81974s) is within the limit (172800.0s)
[2025-11-28 21:56:20] 2025-11-28 20:55:43,612 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,612 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,612 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,612 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | job 6896297900 has completed (purged errors)
[2025-11-28 21:56:20] 2025-11-28 20:55:43,614 | INFO     | overall cleanup function is called
[2025-11-28 21:56:20] 2025-11-28 20:55:44,635 | INFO     | --- collectZombieJob: --- 10, [2940]
[2025-11-28 21:56:20] 2025-11-28 20:55:44,636 | INFO     | zombie collector waiting for pid 2940
[2025-11-28 21:56:20] 2025-11-28 20:55:44,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 21:56:20] 2025-11-28 20:55:44,636 | INFO     | collected zombie processes
[2025-11-28 21:56:20] 2025-11-28 20:55:44,636 | INFO     | will attempt to kill all subprocesses of pid=2940
[2025-11-28 21:56:20] 2025-11-28 20:55:44,757 | INFO     | process IDs to be killed: [2940] (in reverse order)
[2025-11-28 21:56:20] 2025-11-28 20:55:45,886 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 21:56:20] 2025-11-28 20:55:45,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 21:56:20] 2025-11-28 20:55:45,889 | INFO     | did not find any defunct processes belonging to 2940
[2025-11-28 21:56:20] 2025-11-28 20:55:45,891 | INFO     | did not find any defunct processes belonging to 2940
[2025-11-28 21:56:20] 2025-11-28 20:55:45,948 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 21:56:20] 2025-11-28 20:55:45,948 | INFO     | ready for new job
[2025-11-28 21:56:20] 2025-11-28 20:55:45,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 21:56:20] 2025-11-28 20:55:45,953 | INFO     | ***************************************
[2025-11-28 21:56:20] 2025-11-28 20:55:45,953 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 21:56:20] 2025-11-28 20:55:45,953 | INFO     | ***************************************
[2025-11-28 21:56:20] 2025-11-28 20:55:45,953 | INFO     | 
[2025-11-28 21:56:20] 2025-11-28 20:55:45,954 | INFO     | pilot is running in a VM
[2025-11-28 21:56:20] 2025-11-28 20:55:45,954 | INFO     | architecture information:
[2025-11-28 21:56:20] 2025-11-28 20:55:45,961 | INFO     | executing command: cat /etc/os-release
[2025-11-28 21:56:20] 2025-11-28 20:55:46,165 | INFO     | cat /etc/os-release:
[2025-11-28 21:56:20] NAME="CentOS Linux"
[2025-11-28 21:56:20] VERSION="7 (Core)"
[2025-11-28 21:56:20] ID="centos"
[2025-11-28 21:56:20] ID_LIKE="rhel fedora"
[2025-11-28 21:56:20] VERSION_ID="7"
[2025-11-28 21:56:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 21:56:20] ANSI_COLOR="0;31"
[2025-11-28 21:56:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 21:56:20] HOME_URL="https://www.centos.org/"
[2025-11-28 21:56:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 21:56:20] 
[2025-11-28 21:56:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 21:56:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 21:56:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 21:56:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 21:56:20] 
[2025-11-28 21:56:20] 2025-11-28 20:55:46,165 | INFO     | ***************************************
[2025-11-28 21:56:20] 2025-11-28 20:55:46,670 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 21:56:20] 2025-11-28 20:55:46,885 | INFO     | sufficient remaining disk space (488376369152 B)
[2025-11-28 21:56:20] 2025-11-28 20:55:46,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 21:56:20] 2025-11-28 20:55:46,886 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 21:56:20] 2025-11-28 20:55:46,886 | INFO     | update_server=False
[2025-11-28 21:56:20] 2025-11-28 20:55:46,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 21:56:20] 2025-11-28 20:55:46,886 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 21:56:20] 2025-11-28 20:55:46,957 | INFO     | all payload control threads have been joined
[2025-11-28 21:56:20] 2025-11-28 20:55:47,160 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 21:56:20] 2025-11-28 20:55:47,161 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 21:56:20] 2025-11-28 20:55:47,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 21:56:20] 2025-11-28 20:55:47,161 | INFO     | will abort loop
[2025-11-28 21:56:20] 2025-11-28 20:55:47,475 | INFO     | all job control threads have been joined
[2025-11-28 21:56:20] 2025-11-28 20:55:47,891 | INFO     | [job] retrieve thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:47,958 | INFO     | [job] validate thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:47,963 | INFO     | [payload] control thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:47,987 | INFO     | all data control threads have been joined
[2025-11-28 21:56:20] 2025-11-28 20:55:48,141 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 21:56:20] 2025-11-28 20:55:48,166 | INFO     | [job] job monitor thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 21:56:20] 2025-11-28 20:55:48,333 | INFO     | [payload] failed_post thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,481 | INFO     | [job] control thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,636 | INFO     | [payload] validate_post thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,877 | INFO     | [data] copytool_in thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,957 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,971 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:48,993 | INFO     | [data] control thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:49,147 | INFO     | [job] queue monitor thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:49,158 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:49,395 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:50,198 | INFO     | [data] copytool_out thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:50,895 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 21:56:20] 2025-11-28 20:55:51,583 | INFO     | [monitor] cgroup control has ended
[2025-11-28 21:56:20] 2025-11-28 20:55:52,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180555462464)>', '<ExcThread(monitor, started 140180107273984)>']
[2025-11-28 21:56:20] 2025-11-28 20:55:57,031 | INFO     | all workflow threads have been joined
[2025-11-28 21:56:20] 2025-11-28 20:55:57,032 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 21:56:20] 2025-11-28 20:55:57,032 | INFO     | traces error code: 0
[2025-11-28 21:56:20] 2025-11-28 20:55:57,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 21:56:20] 2025-11-28 20:56:16,423 | INFO     | PID=28730 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 21:56:20] 2025-11-28 20:56:16,424 | INFO     | .. there are 9 such processes running
[2025-11-28 21:56:20] 2025-11-28 20:56:16,424 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 21:56:20] 2025-11-28 20:56:16,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 21:56:20] 2025-11-28 20:56:16,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 21:56:20] 2025-11-28 20:56:16,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 21:56:20] 2025-11-28 20:56:16,425 | INFO     | [monitor] control thread has ended
[2025-11-28 21:56:20] 2025-11-28 20:56:16,720 [wrapper] ==== pilot stdout END ====
[2025-11-28 21:56:20] 2025-11-28 20:56:16,825 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 21:56:20] 2025-11-28 20:56:16,882 [wrapper] pilotpid: 28730
[2025-11-28 21:56:20] 2025-11-28 20:56:16,995 [wrapper] Pilot exit status: 0
[2025-11-28 21:56:20] 2025-11-28 20:56:17,312 [wrapper] pandaids: 6896297900
[2025-11-28 21:56:20] 2025-11-28 20:56:17,816 [wrapper] cleanup supervisor_pilot 28217 28731
[2025-11-28 21:56:20] 2025-11-28 20:56:17,908 [wrapper] Test setup, not cleaning
[2025-11-28 21:56:20] 2025-11-28 20:56:18,018 [wrapper] apfmon messages muted
[2025-11-28 21:56:20] 2025-11-28 20:56:18,103 [wrapper] ==== wrapper stdout END ====
[2025-11-28 21:56:20] 2025-11-28 20:56:18,216 [wrapper] ==== wrapper stderr END ====
[2025-11-28 21:56:20]  *** Error codes and diagnostics ***
[2025-11-28 21:56:20]     "exeErrorCode": 0,
[2025-11-28 21:56:20]     "exeErrorDiag": "",
[2025-11-28 21:56:20]     "pilotErrorCode": 0,
[2025-11-28 21:56:20]     "pilotErrorDiag": "",
[2025-11-28 21:56:20]  *** Listing of results directory ***
[2025-11-28 21:56:20] total 1319304
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc    576529 Nov 25 02:13 pilot3.tar.gz
[2025-11-28 21:56:20] -rwx------. 1 boinc boinc     36292 Nov 25 02:47 runpilot2-wrapper.sh
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc      5112 Nov 25 02:47 queuedata.json
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc       100 Nov 27 23:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 21:56:20] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 23:05 run_atlas
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc       105 Nov 27 23:05 job.xml
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc      6391 Nov 27 23:05 init_data.xml
[2025-11-28 21:56:20] -rw-r--r--. 2 boinc boinc 407792001 Nov 27 23:05 EVNT.47483658._001474.pool.root.1
[2025-11-28 21:56:20] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:05 start_atlas.sh
[2025-11-28 21:56:20] drwxrwx--x. 2 boinc boinc        68 Nov 27 23:05 shared
[2025-11-28 21:56:20] -rw-r--r--. 2 boinc boinc    590107 Nov 27 23:05 input.tar.gz
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc         0 Nov 27 23:05 boinc_lockfile
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc      2786 Nov 27 23:06 pandaJob.out
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc    991540 Nov 27 23:09 agis_schedconf.cvmfs.json
[2025-11-28 21:56:20] drwx------. 5 boinc boinc      4096 Nov 27 23:09 pilot3
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc       533 Nov 28 21:36 boinc_task_state.xml
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc 912594808 Nov 28 21:52 HITS.47556149._004604.pool.root.1
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc      1031 Nov 28 21:53 memory_monitor_summary.json
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc   1516240 Nov 28 21:54 agis_ddmendpoints.agis.ALL.json
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc   2428239 Nov 28 21:54 log.47556149._004604.job.log.tgz.1
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc      8628 Nov 28 21:55 heartbeat.json
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc      8192 Nov 28 21:56 boinc_mmap_file
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc        29 Nov 28 21:56 wrapper_checkpoint.txt
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc        95 Nov 28 21:56 pilot_heartbeat.json
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc       820 Nov 28 21:56 pilotlog.txt
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc  10911055 Nov 28 21:56 log.47556149._004604.job.log.1
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc       353 Nov 28 21:56 output.list
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc       620 Nov 28 21:56 runtime_log
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc  13363200 Nov 28 21:56 result.tar.gz
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc       662 Nov 28 21:56 WNJLDmbKxh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG3LKDmgjAlFn.diag
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc      8817 Nov 28 21:56 runtime_log.err
[2025-11-28 21:56:20] -rw-r--r--. 1 boinc boinc     21200 Nov 28 21:56 stderr.txt
[2025-11-28 21:56:20] HITS file was successfully produced:
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc 912594808 Nov 28 21:52 shared/HITS.pool.root.1
[2025-11-28 21:56:20]  *** Contents of shared directory: ***
[2025-11-28 21:56:20] total 1303092
[2025-11-28 21:56:20] -rw-r--r--. 2 boinc boinc 407792001 Nov 27 23:05 ATLAS.root_0
[2025-11-28 21:56:20] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:05 start_atlas.sh
[2025-11-28 21:56:20] -rw-r--r--. 2 boinc boinc    590107 Nov 27 23:05 input.tar.gz
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc 912594808 Nov 28 21:52 HITS.pool.root.1
[2025-11-28 21:56:20] -rw-------. 1 boinc boinc  13363200 Nov 28 21:56 result.tar.gz
21:56:22 (24937): run_atlas exited; CPU time 313962.631225
21:56:22 (24937): called boinc_finish(0)

</stderr_txt>
]]>

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