Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:07 (3100015): wrapper (7.7.26015): starting
00:01:07 (3100015): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:07] Arguments: --nthreads 9
[2025-11-26 00:01:07] Threads: 9
[2025-11-26 00:01:07] Checking for CVMFS
[2025-11-26 00:01:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:10] 2.13.3.0 9456 29603 352640 153309 2 646 28672048 32935937 24373 16776704 0 92850113 99.402 139646984 41007 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:10] CVMFS is ok
[2025-11-26 00:01:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:10] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:10] Checking for apptainer binary...
[2025-11-26 00:01:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:10] Running /usr/bin/apptainer --version
[2025-11-26 00:01:10] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:11] c6-5-7-2.aglt2.org
[2025-11-26 00:01:11] apptainer works
[2025-11-26 00:01:11] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:11] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:11] Starting ATLAS job with PandaID=6895371752
[2025-11-26 00:01:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:32:37]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:32:37] 2025-11-27 00:31:36,288 | INFO     | monitor loop #4150: job 0:6895371752 is in state 'finished'
[2025-11-26 19:32:37] 2025-11-27 00:31:36,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:32:37] 2025-11-27 00:31:36,767 | INFO     | time since job start (70153s) is within the limit (172800.0s)
[2025-11-26 19:32:37] 2025-11-27 00:31:38,775 | INFO     | time since job start (70155s) is within the limit (172800.0s)
[2025-11-26 19:32:37] 2025-11-27 00:31:38,792 | INFO     | monitor loop #4151: job 0:6895371752 is in state 'finished'
[2025-11-26 19:32:37] 2025-11-27 00:31:38,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:32:37] 2025-11-27 00:31:40,782 | INFO     | time since job start (70157s) is within the limit (172800.0s)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,296 | INFO     | monitor loop #4152: job 0:6895371752 is in state 'finished'
[2025-11-26 19:32:37] 2025-11-27 00:31:41,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,576 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 19:32:37] 2025-11-27 00:31:41,601 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2975.7846071428576
[2025-11-26 19:32:37] 2025-11-27 00:31:41,624 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895371752/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,625 | INFO     | extracted standard info from prmon json
[2025-11-26 19:32:37] 2025-11-27 00:31:41,625 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:32:37] 2025-11-27 00:31:41,625 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:32:37] 2025-11-27 00:31:41,650 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:32:37] 2025-11-27 00:31:41,654 | INFO     | sum of square deviations: 469119868986.11395
[2025-11-26 19:32:37] 2025-11-27 00:31:41,690 | INFO     | sum of deviations: 4201078102632.1436
[2025-11-26 19:32:37] 2025-11-27 00:31:41,690 | INFO     | mean x: 1764168465.912021
[2025-11-26 19:32:37] 2025-11-27 00:31:41,690 | INFO     | mean y: 3044696.2290940764
[2025-11-26 19:32:37] 2025-11-27 00:31:41,690 | INFO     | intersect: -15795496362.189627
[2025-11-26 19:32:37] 2025-11-27 00:31:41,692 | INFO     | chi2: 14.319639395016925
[2025-11-26 19:32:37] 2025-11-27 00:31:41,694 | INFO     | sum of square deviations: 463017473486.89734
[2025-11-26 19:32:37] 2025-11-27 00:31:41,725 | INFO     | sum of deviations: 4616504806927.839
[2025-11-26 19:32:37] 2025-11-27 00:31:41,725 | INFO     | mean x: 1764168313.4225721
[2025-11-26 19:32:37] 2025-11-27 00:31:41,726 | INFO     | mean y: 3055076.331583552
[2025-11-26 19:32:37] 2025-11-27 00:31:41,726 | INFO     | intersect: -17586543514.434242
[2025-11-26 19:32:37] 2025-11-27 00:31:41,727 | INFO     | chi2: 10.964904279462619
[2025-11-26 19:32:37] 2025-11-27 00:31:41,728 | INFO     | current chi2=10.964904279462619 (change=23.427511147534315 %)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,728 | INFO     | right removable region: 1142
[2025-11-26 19:32:37] 2025-11-27 00:31:41,729 | INFO     | sum of square deviations: 463015784396.8973
[2025-11-26 19:32:37] 2025-11-27 00:31:41,760 | INFO     | sum of deviations: 3708048919103.679
[2025-11-26 19:32:37] 2025-11-27 00:31:41,760 | INFO     | mean x: 1764168618.4225721
[2025-11-26 19:32:37] 2025-11-27 00:31:41,760 | INFO     | mean y: 3057013.120734908
[2025-11-26 19:32:37] 2025-11-27 00:31:41,760 | INFO     | intersect: -14125237872.50452
[2025-11-26 19:32:37] 2025-11-27 00:31:41,762 | INFO     | chi2: 10.099033316517145
[2025-11-26 19:32:37] 2025-11-27 00:31:41,762 | INFO     | current chi2=10.099033316517145 (change=29.474248352709935 %)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,764 | INFO     | sum of square deviations: 456964863594.92316
[2025-11-26 19:32:37] 2025-11-27 00:31:41,794 | INFO     | sum of deviations: 3328959356187.2896
[2025-11-26 19:32:37] 2025-11-27 00:31:41,794 | INFO     | mean x: 1764168770.933216
[2025-11-26 19:32:37] 2025-11-27 00:31:41,795 | INFO     | mean y: 3066564.1616871706
[2025-11-26 19:32:37] 2025-11-27 00:31:41,795 | INFO     | intersect: -12848788367.725481
[2025-11-26 19:32:37] 2025-11-27 00:31:41,796 | INFO     | chi2: 7.747439066148055
[2025-11-26 19:32:37] 2025-11-27 00:31:41,797 | INFO     | current chi2=7.747439066148055 (change=23.285340058468933 %)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,797 | INFO     | left removable region: 20
[2025-11-26 19:32:37] 2025-11-27 00:31:41,799 | INFO     | sum of square deviations: 437960571034.119
[2025-11-26 19:32:37] 2025-11-27 00:31:41,829 | INFO     | sum of deviations: 3589917556407.293
[2025-11-26 19:32:37] 2025-11-27 00:31:41,830 | INFO     | mean x: 1764168892.9411764
[2025-11-26 19:32:37] 2025-11-27 00:31:41,830 | INFO     | mean y: 3085550.3529411764
[2025-11-26 19:32:37] 2025-11-27 00:31:41,830 | INFO     | intersect: -14457624614.224321
[2025-11-26 19:32:37] 2025-11-27 00:31:41,832 | INFO     | chi2: 3.4235992000300444
[2025-11-26 19:32:37] 2025-11-27 00:31:41,832 | INFO     | current memory leak: 8.20 B/s (using 1122 data points, chi2=3.42)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,833 | INFO     | could have reported an average CPU frequency of 2943 MHz (41 samples)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | ..............................
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | . Timing measurements:
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | . get job = 0 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | . initial setup = 5 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | . payload setup = 42 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | . stage-in = 0 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,834 | INFO     | . payload execution = 70025 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,835 | INFO     | . stage-out = 4 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,835 | INFO     | . log creation = 0 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,835 | INFO     | ..............................
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | 
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | job summary report
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | --------------------------------------------------
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | PanDA job id: 6895371752
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | task id: 47556137
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | errors: (none)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | pilot state: finished 
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | transexitcode: 0
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | exeerrorcode: 0
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | exeerrordiag: 
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | exitcode: 0
[2025-11-26 19:32:37] 2025-11-27 00:31:41,952 | INFO     | exitmsg: OK
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | cpuconsumptiontime: 231652 s
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | nevents: 1000
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | neventsw: 0
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | pid: 3123441
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | pgrp: 3123441
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | corecount: 9
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | event service: False
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 32: 2284660, 33: 2284688, 70072: 2341457, 70077: 2350451, 70078: 2350507, 70099: 2350849}
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | --------------------------------------------------
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | 
[2025-11-26 19:32:37] 2025-11-27 00:31:41,953 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 19:32:37] 2025-11-27 00:31:41,976 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,977 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | job 6895371752 has completed (purged errors)
[2025-11-26 19:32:37] 2025-11-27 00:31:41,978 | INFO     | overall cleanup function is called
[2025-11-26 19:32:37] 2025-11-27 00:31:42,993 | INFO     | --- collectZombieJob: --- 10, [3123441]
[2025-11-26 19:32:37] 2025-11-27 00:31:42,994 | INFO     | zombie collector waiting for pid 3123441
[2025-11-26 19:32:37] 2025-11-27 00:31:42,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:32:37] 2025-11-27 00:31:42,994 | INFO     | collected zombie processes
[2025-11-26 19:32:37] 2025-11-27 00:31:42,994 | INFO     | will attempt to kill all subprocesses of pid=3123441
[2025-11-26 19:32:37] 2025-11-27 00:31:43,400 | INFO     | process IDs to be killed: [3123441] (in reverse order)
[2025-11-26 19:32:37] 2025-11-27 00:31:43,563 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:32:37] 2025-11-27 00:31:43,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:32:37] 2025-11-27 00:31:43,584 | INFO     | did not find any defunct processes belonging to 3123441
[2025-11-26 19:32:37] 2025-11-27 00:31:43,603 | INFO     | did not find any defunct processes belonging to 3123441
[2025-11-26 19:32:37] 2025-11-27 00:31:43,605 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:32:37] 2025-11-27 00:31:43,605 | INFO     | ready for new job
[2025-11-26 19:32:37] 2025-11-27 00:31:43,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:32:37] 2025-11-27 00:31:43,610 | INFO     | ***************************************
[2025-11-26 19:32:37] 2025-11-27 00:31:43,610 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:32:37] 2025-11-27 00:31:43,611 | INFO     | ***************************************
[2025-11-26 19:32:37] 2025-11-27 00:31:43,611 | INFO     | 
[2025-11-26 19:32:37] 2025-11-27 00:31:43,613 | INFO     | architecture information:
[2025-11-26 19:32:37] 2025-11-27 00:31:43,614 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:32:37] 2025-11-27 00:31:43,645 | INFO     | cat /etc/os-release:
[2025-11-26 19:32:37] NAME="CentOS Linux"
[2025-11-26 19:32:37] VERSION="7 (Core)"
[2025-11-26 19:32:37] ID="centos"
[2025-11-26 19:32:37] ID_LIKE="rhel fedora"
[2025-11-26 19:32:37] VERSION_ID="7"
[2025-11-26 19:32:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:32:37] ANSI_COLOR="0;31"
[2025-11-26 19:32:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:32:37] HOME_URL="https://www.centos.org/"
[2025-11-26 19:32:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:32:37] 
[2025-11-26 19:32:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:32:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:32:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:32:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:32:37] 
[2025-11-26 19:32:37] 2025-11-27 00:31:43,645 | INFO     | ***************************************
[2025-11-26 19:32:37] 2025-11-27 00:31:44,148 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 19:32:37] 2025-11-27 00:31:44,198 | INFO     | sufficient remaining disk space (71214039040 B)
[2025-11-26 19:32:37] 2025-11-27 00:31:44,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:32:37] 2025-11-27 00:31:44,198 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:32:37] 2025-11-27 00:31:44,198 | INFO     | update_server=False
[2025-11-26 19:32:37] 2025-11-27 00:31:44,198 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:32:37] 2025-11-27 00:31:44,199 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:32:37] 2025-11-27 00:31:44,535 | INFO     | all payload control threads have been joined
[2025-11-26 19:32:37] 2025-11-27 00:31:44,695 | INFO     | all data control threads have been joined
[2025-11-26 19:32:37] 2025-11-27 00:31:44,807 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:32:37] 2025-11-27 00:31:44,829 | INFO     | aborting loop
[2025-11-26 19:32:37] 2025-11-27 00:31:45,204 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,312 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,338 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,469 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,530 | INFO     | all job control threads have been joined
[2025-11-26 19:32:37] 2025-11-27 00:31:45,540 | INFO     | [payload] control thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:32:37] 2025-11-27 00:31:45,701 | INFO     | [data] control thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,837 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,949 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:45,950 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:46,206 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:46,477 | INFO     | [job] validate thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:46,478 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:46,534 | INFO     | [job] control thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:46,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:32:37] 2025-11-27 00:31:47,976 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:31:49,688 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:32:37] 2025-11-27 00:32:14,408 | INFO     | PID=3108106 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:32:37] 2025-11-27 00:32:14,409 | INFO     | .. there are 30 such processes running
[2025-11-26 19:32:37] 2025-11-27 00:32:14,409 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:32:37] 2025-11-27 00:32:14,409 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:32:37] 2025-11-27 00:32:14,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:32:37] 2025-11-27 00:32:29,283 [wrapper] supervise_pilot (15 min periods counter: 79)
[2025-11-26 19:32:37] 2025-11-27 00:32:31,049 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:32:37] 2025-11-27 00:32:31,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140382584264512)>', '<ExcThread(monitor, started 140382230779648)>']
[2025-11-26 19:32:37] 2025-11-27 00:32:32,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:32:37] 2025-11-27 00:32:32,546 | INFO     | [monitor] control thread has ended
[2025-11-26 19:32:37] 2025-11-27 00:32:36,876 | INFO     | all workflow threads have been joined
[2025-11-26 19:32:37] 2025-11-27 00:32:36,877 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:32:37] 2025-11-27 00:32:36,877 | INFO     | traces error code: 0
[2025-11-26 19:32:37] 2025-11-27 00:32:36,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:32:37] 2025-11-27 00:32:37,045 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:32:37] 2025-11-27 00:32:37,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:32:37] 2025-11-27 00:32:37,057 [wrapper] pilotpid: 3108106
[2025-11-26 19:32:37] 2025-11-27 00:32:37,060 [wrapper] Pilot exit status: 0
[2025-11-26 19:32:37] 2025-11-27 00:32:37,126 [wrapper] pandaids: 6895371752
[2025-11-26 19:32:37] 2025-11-27 00:32:37,246 [wrapper] cleanup supervisor_pilot 3558398 3108107
[2025-11-26 19:32:37] 2025-11-27 00:32:37,250 [wrapper] Test setup, not cleaning
[2025-11-26 19:32:37] 2025-11-27 00:32:37,253 [wrapper] apfmon messages muted
[2025-11-26 19:32:37] 2025-11-27 00:32:37,256 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:32:37] 2025-11-27 00:32:37,259 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:32:37]  *** Error codes and diagnostics ***
[2025-11-26 19:32:37]     "exeErrorCode": 0,
[2025-11-26 19:32:37]     "exeErrorDiag": "",
[2025-11-26 19:32:37]     "pilotErrorCode": 0,
[2025-11-26 19:32:37]     "pilotErrorDiag": "",
[2025-11-26 19:32:37]  *** Listing of results directory ***
[2025-11-26 19:32:37] total 1327780
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 16:23 pilot3.tar.gz
[2025-11-26 19:32:37] -rwx------. 1 boincer umatlas     36292 Nov 23 16:37 runpilot2-wrapper.sh
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 16:37 queuedata.json
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:32:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 19:32:37] -rw-r--r--. 2 boincer umatlas 409432601 Nov 26 00:01 EVNT.47483658._000901.pool.root.1
[2025-11-26 19:32:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 19:32:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 19:32:37] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:01 input.tar.gz
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:01 pandaJob.out
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-26 19:32:37] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:12 boinc_task_state.xml
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 19:29 init_data.xml
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas 923943762 Nov 26 19:30 HITS.47556137._008876.pool.root.1
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas      1058 Nov 26 19:31 memory_monitor_summary.json
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:31 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas   2363420 Nov 26 19:31 log.47556137._008876.job.log.tgz.1
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas      8617 Nov 26 19:31 heartbeat.json
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas        95 Nov 26 19:32 pilot_heartbeat.json
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:32 boinc_mmap_file
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:32 wrapper_checkpoint.txt
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas      4824 Nov 26 19:32 pilotlog.txt
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas   8804866 Nov 26 19:32 log.47556137._008876.job.log.1
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas       353 Nov 26 19:32 output.list
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:32 runtime_log
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas  11192320 Nov 26 19:32 result.tar.gz
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 19:32 runtime_log.err
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas       660 Nov 26 19:32 NUqNDmpwWh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRCLKDmWtnGAo.diag
[2025-11-26 19:32:37] -rw-r--r--. 1 boincer umatlas     21571 Nov 26 19:32 stderr.txt
[2025-11-26 19:32:37] HITS file was successfully produced:
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas 923943762 Nov 26 19:30 shared/HITS.pool.root.1
[2025-11-26 19:32:37]  *** Contents of shared directory: ***
[2025-11-26 19:32:37] total 1313668
[2025-11-26 19:32:37] -rw-r--r--. 2 boincer umatlas 409432601 Nov 26 00:01 ATLAS.root_0
[2025-11-26 19:32:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 19:32:37] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:01 input.tar.gz
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas 923943762 Nov 26 19:30 HITS.pool.root.1
[2025-11-26 19:32:37] -rw-------. 1 boincer umatlas  11192320 Nov 26 19:32 result.tar.gz
19:32:38 (3100015): run_atlas exited; CPU time 233221.172220
19:32:38 (3100015): called boinc_finish(0)

</stderr_txt>
]]>

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