Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:53:25 (8945): wrapper (7.7.26015): starting
16:53:25 (8945): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:53:25] Arguments: --nthreads 8
[2025-11-25 16:53:25] Threads: 8
[2025-11-25 16:53:25] Checking for CVMFS
[2025-11-25 16:53:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:53:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:53:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:53:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:53:26] 2.11.2.0 2877 58164 80940 153298 1 82 16389345 20275200 1 130560 0 13718681 99.891 2694457 27514 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 16:53:26] CVMFS is ok
[2025-11-25 16:53:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:53:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:53:26] Further information can be found at the LHC@home message board.
[2025-11-25 16:53:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:53:26] Checking for apptainer binary...
[2025-11-25 16:53:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:53:26] Running /usr/bin/apptainer --version
[2025-11-25 16:53:26] apptainer version 1.3.2-1.el7
[2025-11-25 16:53:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:53:27] c-204-32.aglt2.org
[2025-11-25 16:53:27] apptainer works
[2025-11-25 16:53:27] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:53:27] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:53:27] Starting ATLAS job with PandaID=6895376888
[2025-11-25 16:53:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:18:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:18:06] 2025-11-26 10:17:26,698 | INFO     | PID=13551 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 05:18:06] 2025-11-26 10:17:26,980 | INFO     | monitor loop #3284: job 0:6895376888 is in state 'finished'
[2025-11-26 05:18:06] 2025-11-26 10:17:26,980 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:18:06] 2025-11-26 10:17:27,699 | INFO     | time since job start (44622s) is within the limit (172800.0s)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,025 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 05:18:06] 2025-11-26 10:17:28,028 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-26 05:18:06] 2025-11-26 10:17:28,031 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895376888/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,032 | INFO     | extracted standard info from prmon json
[2025-11-26 05:18:06] 2025-11-26 10:17:28,032 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:18:06] 2025-11-26 10:17:28,032 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:18:06] 2025-11-26 10:17:28,045 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:18:06] 2025-11-26 10:17:28,046 | INFO     | sum of square deviations: 121123785196.8809
[2025-11-26 05:18:06] 2025-11-26 10:17:28,056 | INFO     | sum of deviations: 767678917251.1891
[2025-11-26 05:18:06] 2025-11-26 10:17:28,057 | INFO     | mean x: 1764129923.5896032
[2025-11-26 05:18:06] 2025-11-26 10:17:28,057 | INFO     | mean y: 3218074.340629275
[2025-11-26 05:18:06] 2025-11-26 10:17:28,057 | INFO     | intersect: -11177784463.107845
[2025-11-26 05:18:06] 2025-11-26 10:17:28,058 | INFO     | chi2: 6.140193075900204
[2025-11-26 05:18:06] 2025-11-26 10:17:28,059 | INFO     | sum of square deviations: 118655433157.63097
[2025-11-26 05:18:06] 2025-11-26 10:17:28,069 | INFO     | sum of deviations: 1021964038605.2018
[2025-11-26 05:18:06] 2025-11-26 10:17:28,069 | INFO     | mean x: 1764129771.093664
[2025-11-26 05:18:06] 2025-11-26 10:17:28,069 | INFO     | mean y: 3233778.261707989
[2025-11-26 05:18:06] 2025-11-26 10:17:28,070 | INFO     | intersect: -15190989844.819004
[2025-11-26 05:18:06] 2025-11-26 10:17:28,070 | INFO     | chi2: 3.3773620875052486
[2025-11-26 05:18:06] 2025-11-26 10:17:28,070 | INFO     | current chi2=3.3773620875052486 (change=44.995832447661286 %)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,071 | INFO     | sum of square deviations: 116220849193.35634
[2025-11-26 05:18:06] 2025-11-26 10:17:28,082 | INFO     | sum of deviations: 1150354796550.341
[2025-11-26 05:18:06] 2025-11-26 10:17:28,082 | INFO     | mean x: 1764129618.597781
[2025-11-26 05:18:06] 2025-11-26 10:17:28,082 | INFO     | mean y: 3241813.4632454924
[2025-11-26 05:18:06] 2025-11-26 10:17:28,082 | INFO     | intersect: -17458125768.821537
[2025-11-26 05:18:06] 2025-11-26 10:17:28,083 | INFO     | chi2: 2.566700406701038
[2025-11-26 05:18:06] 2025-11-26 10:17:28,083 | INFO     | current chi2=2.566700406701038 (change=24.00280632637233 %)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,083 | INFO     | right removable region: 720
[2025-11-26 05:18:06] 2025-11-26 10:17:28,084 | INFO     | sum of square deviations: 118655170247.63104
[2025-11-26 05:18:06] 2025-11-26 10:17:28,095 | INFO     | sum of deviations: 538855812512.004
[2025-11-26 05:18:06] 2025-11-26 10:17:28,095 | INFO     | mean x: 1764130076.093664
[2025-11-26 05:18:06] 2025-11-26 10:17:28,095 | INFO     | mean y: 3232187.044077135
[2025-11-26 05:18:06] 2025-11-26 10:17:28,095 | INFO     | intersect: -8008317107.827831
[2025-11-26 05:18:06] 2025-11-26 10:17:28,096 | INFO     | chi2: 3.7885382889762242
[2025-11-26 05:18:06] 2025-11-26 10:17:28,096 | INFO     | current chi2=3.7885382889762242 (change=38.299362216377986 %)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,097 | INFO     | sum of square deviations: 116220500274.11644
[2025-11-26 05:18:06] 2025-11-26 10:17:28,107 | INFO     | sum of deviations: 495908546361.42816
[2025-11-26 05:18:06] 2025-11-26 10:17:28,108 | INFO     | mean x: 1764130228.592233
[2025-11-26 05:18:06] 2025-11-26 10:17:28,108 | INFO     | mean y: 3234875.6477115117
[2025-11-26 05:18:06] 2025-11-26 10:17:28,108 | INFO     | intersect: -7524243109.647676
[2025-11-26 05:18:06] 2025-11-26 10:17:28,109 | INFO     | chi2: 3.7526196410998764
[2025-11-26 05:18:06] 2025-11-26 10:17:28,109 | INFO     | current chi2=3.7526196410998764 (change=0.9480872340887462 %)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,109 | INFO     | left removable region: 20
[2025-11-26 05:18:06] 2025-11-26 10:17:28,110 | INFO     | sum of square deviations: 106358436104.5943
[2025-11-26 05:18:06] 2025-11-26 10:17:28,120 | INFO     | sum of deviations: 835719933827.0066
[2025-11-26 05:18:06] 2025-11-26 10:17:28,120 | INFO     | mean x: 1764130198.102857
[2025-11-26 05:18:06] 2025-11-26 10:17:28,120 | INFO     | mean y: 3263471.097142857
[2025-11-26 05:18:06] 2025-11-26 10:17:28,120 | INFO     | intersect: -13858530914.172672
[2025-11-26 05:18:06] 2025-11-26 10:17:28,121 | INFO     | chi2: 0.10205763847635368
[2025-11-26 05:18:06] 2025-11-26 10:17:28,121 | INFO     | current memory leak: 7.86 B/s (using 700 data points, chi2=0.10)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,122 | INFO     | could have reported an average CPU frequency of 2167 MHz (28 samples)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,122 | INFO     | ..............................
[2025-11-26 05:18:06] 2025-11-26 10:17:28,122 | INFO     | . Timing measurements:
[2025-11-26 05:18:06] 2025-11-26 10:17:28,122 | INFO     | . get job = 0 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,122 | INFO     | . initial setup = 2 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,122 | INFO     | . payload setup = 9 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,123 | INFO     | . stage-in = 0 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,123 | INFO     | . payload execution = 44580 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,123 | INFO     | . stage-out = 3 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,123 | INFO     | . log creation = 0 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,123 | INFO     | ..............................
[2025-11-26 05:18:06] 2025-11-26 10:17:28,263 | INFO     | 
[2025-11-26 05:18:06] 2025-11-26 10:17:28,263 | INFO     | job summary report
[2025-11-26 05:18:06] 2025-11-26 10:17:28,263 | INFO     | --------------------------------------------------
[2025-11-26 05:18:06] 2025-11-26 10:17:28,264 | INFO     | PanDA job id: 6895376888
[2025-11-26 05:18:06] 2025-11-26 10:17:28,264 | INFO     | task id: 47556137
[2025-11-26 05:18:06] 2025-11-26 10:17:28,264 | INFO     | errors: (none)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,264 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:18:06] 2025-11-26 10:17:28,264 | INFO     | pilot state: finished 
[2025-11-26 05:18:06] 2025-11-26 10:17:28,264 | INFO     | transexitcode: 0
[2025-11-26 05:18:06] 2025-11-26 10:17:28,265 | INFO     | exeerrorcode: 0
[2025-11-26 05:18:06] 2025-11-26 10:17:28,265 | INFO     | exeerrordiag: 
[2025-11-26 05:18:06] 2025-11-26 10:17:28,265 | INFO     | exitcode: 0
[2025-11-26 05:18:06] 2025-11-26 10:17:28,265 | INFO     | exitmsg: OK
[2025-11-26 05:18:06] 2025-11-26 10:17:28,265 | INFO     | cpuconsumptiontime: 345404 s
[2025-11-26 05:18:06] 2025-11-26 10:17:28,265 | INFO     | nevents: 1000
[2025-11-26 05:18:06] 2025-11-26 10:17:28,266 | INFO     | neventsw: 0
[2025-11-26 05:18:06] 2025-11-26 10:17:28,266 | INFO     | pid: 20048
[2025-11-26 05:18:06] 2025-11-26 10:17:28,266 | INFO     | pgrp: 20048
[2025-11-26 05:18:06] 2025-11-26 10:17:28,266 | INFO     | corecount: 8
[2025-11-26 05:18:06] 2025-11-26 10:17:28,266 | INFO     | event service: False
[2025-11-26 05:18:06] 2025-11-26 10:17:28,267 | INFO     | sizes: {0: 2284144, 1: 2284343, 7: 2284605, 11: 2284633, 44594: 2330419, 44598: 2339597, 44605: 2339787}
[2025-11-26 05:18:06] 2025-11-26 10:17:28,267 | INFO     | --------------------------------------------------
[2025-11-26 05:18:06] 2025-11-26 10:17:28,267 | INFO     | 
[2025-11-26 05:18:06] 2025-11-26 10:17:28,267 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 05:18:06] 2025-11-26 10:17:28,391 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,391 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,391 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,392 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,392 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,392 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,392 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,392 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,392 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,394 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:18:06] 2025-11-26 10:17:28,395 | INFO     | job 6895376888 has completed (purged errors)
[2025-11-26 05:18:06] 2025-11-26 10:17:28,395 | INFO     | overall cleanup function is called
[2025-11-26 05:18:06] 2025-11-26 10:17:29,411 | INFO     | --- collectZombieJob: --- 10, [20048]
[2025-11-26 05:18:06] 2025-11-26 10:17:29,411 | INFO     | zombie collector waiting for pid 20048
[2025-11-26 05:18:06] 2025-11-26 10:17:29,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:18:06] 2025-11-26 10:17:29,420 | INFO     | collected zombie processes
[2025-11-26 05:18:06] 2025-11-26 10:17:29,420 | INFO     | will attempt to kill all subprocesses of pid=20048
[2025-11-26 05:18:06] 2025-11-26 10:17:29,518 | INFO     | process IDs to be killed: [20048] (in reverse order)
[2025-11-26 05:18:06] 2025-11-26 10:17:29,573 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:18:06] 2025-11-26 10:17:29,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:18:06] 2025-11-26 10:17:29,579 | INFO     | did not find any defunct processes belonging to 20048
[2025-11-26 05:18:06] 2025-11-26 10:17:29,584 | INFO     | did not find any defunct processes belonging to 20048
[2025-11-26 05:18:06] 2025-11-26 10:17:29,587 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:18:06] 2025-11-26 10:17:29,587 | INFO     | ready for new job
[2025-11-26 05:18:06] 2025-11-26 10:17:29,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:18:06] 2025-11-26 10:17:29,591 | INFO     | ***************************************
[2025-11-26 05:18:06] 2025-11-26 10:17:29,592 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:18:06] 2025-11-26 10:17:29,592 | INFO     | ***************************************
[2025-11-26 05:18:06] 2025-11-26 10:17:29,592 | INFO     | 
[2025-11-26 05:18:06] 2025-11-26 10:17:29,593 | INFO     | architecture information:
[2025-11-26 05:18:06] 2025-11-26 10:17:29,593 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:18:06] 2025-11-26 10:17:29,613 | INFO     | cat /etc/os-release:
[2025-11-26 05:18:06] NAME="CentOS Linux"
[2025-11-26 05:18:06] VERSION="7 (Core)"
[2025-11-26 05:18:06] ID="centos"
[2025-11-26 05:18:06] ID_LIKE="rhel fedora"
[2025-11-26 05:18:06] VERSION_ID="7"
[2025-11-26 05:18:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:18:06] ANSI_COLOR="0;31"
[2025-11-26 05:18:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:18:06] HOME_URL="https://www.centos.org/"
[2025-11-26 05:18:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:18:06] 
[2025-11-26 05:18:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:18:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:18:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:18:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:18:06] 
[2025-11-26 05:18:06] 2025-11-26 10:17:29,613 | INFO     | ***************************************
[2025-11-26 05:18:06] 2025-11-26 10:17:30,117 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 05:18:06] 2025-11-26 10:17:30,140 | INFO     | sufficient remaining disk space (17438867456 B)
[2025-11-26 05:18:06] 2025-11-26 10:17:30,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:18:06] 2025-11-26 10:17:30,141 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:18:06] 2025-11-26 10:17:30,141 | INFO     | update_server=False
[2025-11-26 05:18:06] 2025-11-26 10:17:30,141 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:18:06] 2025-11-26 10:17:30,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:18:06] 2025-11-26 10:17:30,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:18:06] 2025-11-26 10:17:30,488 | INFO     | aborting loop
[2025-11-26 05:18:06] 2025-11-26 10:17:30,629 | INFO     | all job control threads have been joined
[2025-11-26 05:18:06] 2025-11-26 10:17:30,666 | INFO     | all data control threads have been joined
[2025-11-26 05:18:06] 2025-11-26 10:17:30,750 | INFO     | all payload control threads have been joined
[2025-11-26 05:18:06] 2025-11-26 10:17:31,148 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,148 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:18:06] 2025-11-26 10:17:31,492 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,634 | INFO     | [job] control thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,672 | INFO     | [data] control thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,750 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:18:06] 2025-11-26 10:17:31,753 | INFO     | [payload] control thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,754 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,787 | INFO     | [job] validate thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:31,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:32,054 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:32,288 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:32,300 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:32,472 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:33,239 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:35,759 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:18:06] 2025-11-26 10:17:59,206 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:18:06] 2025-11-26 10:18:00,908 | INFO     | PID=13551 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 05:18:06] 2025-11-26 10:18:00,908 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:18:06] 2025-11-26 10:18:00,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:18:06] 2025-11-26 10:18:00,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:18:06] 2025-11-26 10:18:00,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140266066552640)>', '<ExcThread(monitor, started 140265092273920)>']
[2025-11-26 05:18:06] 2025-11-26 10:18:01,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:18:06] 2025-11-26 10:18:01,912 | INFO     | [monitor] control thread has ended
[2025-11-26 05:18:06] 2025-11-26 10:18:05,962 | INFO     | all workflow threads have been joined
[2025-11-26 05:18:06] 2025-11-26 10:18:05,962 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:18:06] 2025-11-26 10:18:05,963 | INFO     | traces error code: 0
[2025-11-26 05:18:06] 2025-11-26 10:18:05,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:18:06] 2025-11-26 10:18:06,072 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:18:06] 2025-11-26 10:18:06,077 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:18:06] 2025-11-26 10:18:06,082 [wrapper] pilotpid: 13551
[2025-11-26 05:18:06] 2025-11-26 10:18:06,087 [wrapper] Pilot exit status: 0
[2025-11-26 05:18:06] 2025-11-26 10:18:06,104 [wrapper] pandaids: 6895376888
[2025-11-26 05:18:06] 2025-11-26 10:18:06,156 [wrapper] cleanup supervisor_pilot 11152 13552
[2025-11-26 05:18:06] 2025-11-26 10:18:06,162 [wrapper] Test setup, not cleaning
[2025-11-26 05:18:06] 2025-11-26 10:18:06,168 [wrapper] apfmon messages muted
[2025-11-26 05:18:06] 2025-11-26 10:18:06,173 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:18:06] 2025-11-26 10:18:06,178 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:18:06]  *** Error codes and diagnostics ***
[2025-11-26 05:18:06]     "exeErrorCode": 0,
[2025-11-26 05:18:06]     "exeErrorDiag": "",
[2025-11-26 05:18:06]     "pilotErrorCode": 0,
[2025-11-26 05:18:06]     "pilotErrorDiag": "",
[2025-11-26 05:18:06]  *** Listing of results directory ***
[2025-11-26 05:18:06] total 1311144
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 19:34 pilot3.tar.gz
[2025-11-26 05:18:06] -rwx------ 1 boincer umatlas     36292 Nov 23 19:42 runpilot2-wrapper.sh
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 19:42 queuedata.json
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas       100 Nov 25 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:18:06] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 16:53 run_atlas
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas       105 Nov 25 16:53 job.xml
[2025-11-26 05:18:06] -rw-r--r-- 2 boincer umatlas 408354064 Nov 25 16:53 EVNT.47483658._000966.pool.root.1
[2025-11-26 05:18:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 16:53 start_atlas.sh
[2025-11-26 05:18:06] drwxrwx--x 2 boincer umatlas      4096 Nov 25 16:53 shared
[2025-11-26 05:18:06] -rw-r--r-- 2 boincer umatlas    590097 Nov 25 16:53 input.tar.gz
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas         0 Nov 25 16:53 boinc_lockfile
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 16:53 pandaJob.out
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas        57 Nov 25 16:53 setup.sh.local
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas    991893 Nov 25 16:53 agis_schedconf.cvmfs.json
[2025-11-26 05:18:06] drwx------ 5 boincer umatlas      4096 Nov 25 16:53 pilot3
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas       533 Nov 26 05:05 boinc_task_state.xml
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas      5913 Nov 26 05:10 init_data.xml
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas 914115658 Nov 26 05:16 HITS.47556137._009525.pool.root.1
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas      1062 Nov 26 05:17 memory_monitor_summary.json
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas   1516240 Nov 26 05:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas   1975180 Nov 26 05:17 log.47556137._009525.job.log.tgz.1
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas      8658 Nov 26 05:17 heartbeat.json
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 05:17 boinc_mmap_file
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas        29 Nov 26 05:17 wrapper_checkpoint.txt
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas        95 Nov 26 05:18 pilot_heartbeat.json
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas      4746 Nov 26 05:18 pilotlog.txt
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas   6139711 Nov 26 05:18 log.47556137._009525.job.log.1
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas       353 Nov 26 05:18 output.list
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas       620 Nov 26 05:18 runtime_log
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas   8130560 Nov 26 05:18 result.tar.gz
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 05:18 runtime_log.err
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas       668 Nov 26 05:18 4aQMDmppZh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrJLKDmNhrMDn.diag
[2025-11-26 05:18:06] -rw-r--r-- 1 boincer umatlas     21397 Nov 26 05:18 stderr.txt
[2025-11-26 05:18:06] HITS file was successfully produced:
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas 914115658 Nov 26 05:16 shared/HITS.pool.root.1
[2025-11-26 05:18:06]  *** Contents of shared directory: ***
[2025-11-26 05:18:06] total 1300016
[2025-11-26 05:18:06] -rw-r--r-- 2 boincer umatlas 408354064 Nov 25 16:53 ATLAS.root_0
[2025-11-26 05:18:06] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 16:53 start_atlas.sh
[2025-11-26 05:18:06] -rw-r--r-- 2 boincer umatlas    590097 Nov 25 16:53 input.tar.gz
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas 914115658 Nov 26 05:16 HITS.pool.root.1
[2025-11-26 05:18:06] -rw------- 1 boincer umatlas   8130560 Nov 26 05:18 result.tar.gz
05:18:07 (8945): run_atlas exited; CPU time 343062.435449
05:18:07 (8945): called boinc_finish(0)

</stderr_txt>
]]>

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