Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:43:23 (6830): wrapper (7.7.26015): starting
16:43:23 (6830): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:43:23] Arguments: --nthreads 8
[2025-11-25 16:43:23] Threads: 8
[2025-11-25 16:43:23] Checking for CVMFS
[2025-11-25 16:43:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:43:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:43:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:43:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:43:24] 2.11.2.0 8539 116830 146716 153298 1 83 14314953 18432000 1885 130560 0 88194746 99.974 4852374 31559 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 16:43:24] CVMFS is ok
[2025-11-25 16:43:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:43:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:43:24] Further information can be found at the LHC@home message board.
[2025-11-25 16:43:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:43:24] Checking for apptainer binary...
[2025-11-25 16:43:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:43:24] Running /usr/bin/apptainer --version
[2025-11-25 16:43:24] apptainer version 1.3.2-1.el7
[2025-11-25 16:43:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:43:25] c-206-1.aglt2.org
[2025-11-25 16:43:25] apptainer works
[2025-11-25 16:43:25] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:43:25] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:43:25] Starting ATLAS job with PandaID=6896297852
[2025-11-25 16:43:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:31:52 (29180): wrapper (7.7.26015): starting
23:31:52 (29180): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:31:52] Arguments: --nthreads 8
[2025-11-25 23:31:52] Threads: 8
[2025-11-25 23:31:52] This job has been restarted, cleaning up previous attempt
[2025-11-25 23:31:52] Checking for CVMFS
[2025-11-25 23:31:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:31:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:31:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:31:53] 2.11.2.0 8539 117238 145984 153309 1 49 14371732 18432001 1 130560 0 88611702 99.975 4867968 31574 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 23:31:53] CVMFS is ok
[2025-11-25 23:31:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:31:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:31:53] Further information can be found at the LHC@home message board.
[2025-11-25 23:31:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:31:53] Checking for apptainer binary...
[2025-11-25 23:31:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:31:53] Running /usr/bin/apptainer --version
[2025-11-25 23:31:53] apptainer version 1.3.2-1.el7
[2025-11-25 23:31:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:31:54] c-206-1.aglt2.org
[2025-11-25 23:31:54] apptainer works
[2025-11-25 23:31:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:31:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:31:54] Starting ATLAS job with PandaID=6896297852
[2025-11-25 23:31:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:59:33]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:59:33] 2025-11-26 23:58:58,967 | INFO     | monitor loop #4997: job 0:6896297852 is in state 'finished'
[2025-11-26 18:59:33] 2025-11-26 23:58:58,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,373 | INFO     | time since job start (70013s) is within the limit (172800.0s)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,698 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 18:59:33] 2025-11-26 23:59:00,704 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2056.375
[2025-11-26 18:59:33] 2025-11-26 23:59:00,707 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896297852/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,707 | INFO     | extracted standard info from prmon json
[2025-11-26 18:59:33] 2025-11-26 23:59:00,708 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:59:33] 2025-11-26 23:59:00,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:59:33] 2025-11-26 23:59:00,724 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:59:33] 2025-11-26 23:59:00,726 | INFO     | sum of square deviations: 469141868108.97766
[2025-11-26 18:59:33] 2025-11-26 23:59:00,750 | INFO     | sum of deviations: 2328742023016.673
[2025-11-26 18:59:33] 2025-11-26 23:59:00,750 | INFO     | mean x: 1764166539.0043554
[2025-11-26 18:59:33] 2025-11-26 23:59:00,751 | INFO     | mean y: 3111493.4651567945
[2025-11-26 18:59:33] 2025-11-26 23:59:00,751 | INFO     | intersect: -8753917103.319569
[2025-11-26 18:59:33] 2025-11-26 23:59:00,752 | INFO     | chi2: 5.680889121649633
[2025-11-26 18:59:33] 2025-11-26 23:59:00,753 | INFO     | sum of square deviations: 463038804687.70087
[2025-11-26 18:59:33] 2025-11-26 23:59:00,779 | INFO     | sum of deviations: 2726336704256.274
[2025-11-26 18:59:33] 2025-11-26 23:59:00,779 | INFO     | mean x: 1764166386.5065618
[2025-11-26 18:59:33] 2025-11-26 23:59:00,779 | INFO     | mean y: 3121423.4969378826
[2025-11-26 18:59:33] 2025-11-26 23:59:00,779 | INFO     | intersect: -10384153947.931028
[2025-11-26 18:59:33] 2025-11-26 23:59:00,780 | INFO     | chi2: 2.687719798585457
[2025-11-26 18:59:33] 2025-11-26 23:59:00,780 | INFO     | current chi2=2.687719798585457 (change=52.6883954072846 %)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,781 | INFO     | sum of square deviations: 456988905053.9123
[2025-11-26 18:59:33] 2025-11-26 23:59:00,807 | INFO     | sum of deviations: 2825126949518.101
[2025-11-26 18:59:33] 2025-11-26 23:59:00,807 | INFO     | mean x: 1764166234.0087874
[2025-11-26 18:59:33] 2025-11-26 23:59:00,807 | INFO     | mean y: 3123911.390158172
[2025-11-26 18:59:33] 2025-11-26 23:59:00,807 | INFO     | intersect: -10903034894.675617
[2025-11-26 18:59:33] 2025-11-26 23:59:00,808 | INFO     | chi2: 2.3955692956194197
[2025-11-26 18:59:33] 2025-11-26 23:59:00,808 | INFO     | current chi2=2.3955692956194197 (change=10.869827394946288 %)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,808 | INFO     | right removable region: 1137
[2025-11-26 18:59:33] 2025-11-26 23:59:00,810 | INFO     | sum of square deviations: 463038521281.7131
[2025-11-26 18:59:33] 2025-11-26 23:59:00,835 | INFO     | sum of deviations: 2019337152922.6885
[2025-11-26 18:59:33] 2025-11-26 23:59:00,835 | INFO     | mean x: 1764166691.5056868
[2025-11-26 18:59:33] 2025-11-26 23:59:00,835 | INFO     | mean y: 3119214.0472440943
[2025-11-26 18:59:33] 2025-11-26 23:59:00,835 | INFO     | intersect: -7690511402.785898
[2025-11-26 18:59:33] 2025-11-26 23:59:00,836 | INFO     | chi2: 3.657957608232877
[2025-11-26 18:59:33] 2025-11-26 23:59:00,837 | INFO     | current chi2=3.657957608232877 (change=35.60941729539216 %)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,838 | INFO     | sum of square deviations: 456988547410.97894
[2025-11-26 18:59:33] 2025-11-26 23:59:00,863 | INFO     | sum of deviations: 1921705931554.1086
[2025-11-26 18:59:33] 2025-11-26 23:59:00,863 | INFO     | mean x: 1764166844.0043936
[2025-11-26 18:59:33] 2025-11-26 23:59:00,863 | INFO     | mean y: 3121674.5782073815
[2025-11-26 18:59:33] 2025-11-26 23:59:00,863 | INFO     | intersect: -7415466619.551298
[2025-11-26 18:59:33] 2025-11-26 23:59:00,864 | INFO     | chi2: 3.569252339060229
[2025-11-26 18:59:33] 2025-11-26 23:59:00,864 | INFO     | current chi2=3.569252339060229 (change=2.424994455184538 %)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,864 | INFO     | left removable region: 20
[2025-11-26 18:59:33] 2025-11-26 23:59:00,865 | INFO     | sum of square deviations: 432153837585.1313
[2025-11-26 18:59:33] 2025-11-26 23:59:00,889 | INFO     | sum of deviations: 2281477612804.4443
[2025-11-26 18:59:33] 2025-11-26 23:59:00,889 | INFO     | mean x: 1764166813.5102954
[2025-11-26 18:59:33] 2025-11-26 23:59:00,889 | INFO     | mean y: 3138353.048343778
[2025-11-26 18:59:33] 2025-11-26 23:59:00,889 | INFO     | intersect: -9310459584.129326
[2025-11-26 18:59:33] 2025-11-26 23:59:00,890 | INFO     | chi2: 0.18233218806018336
[2025-11-26 18:59:33] 2025-11-26 23:59:00,891 | INFO     | current memory leak: 5.28 B/s (using 1117 data points, chi2=0.18)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,891 | INFO     | could have reported an average CPU frequency of 2565 MHz (42 samples)
[2025-11-26 18:59:33] 2025-11-26 23:59:00,891 | INFO     | ..............................
[2025-11-26 18:59:33] 2025-11-26 23:59:00,891 | INFO     | . Timing measurements:
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . get job = 0 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . initial setup = 2 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . payload setup = 6 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . stage-in = 0 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . payload execution = 69977 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . stage-out = 3 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | . log creation = 0 s
[2025-11-26 18:59:33] 2025-11-26 23:59:00,892 | INFO     | ..............................
[2025-11-26 18:59:33] 2025-11-26 23:59:01,447 | INFO     | 
[2025-11-26 18:59:33] 2025-11-26 23:59:01,447 | INFO     | job summary report
[2025-11-26 18:59:33] 2025-11-26 23:59:01,447 | INFO     | --------------------------------------------------
[2025-11-26 18:59:33] 2025-11-26 23:59:01,447 | INFO     | PanDA job id: 6896297852
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | task id: 47556149
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | errors: (none)
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | pilot state: finished 
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | transexitcode: 0
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | exeerrorcode: 0
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | exeerrordiag: 
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | exitcode: 0
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | exitmsg: OK
[2025-11-26 18:59:33] 2025-11-26 23:59:01,448 | INFO     | cpuconsumptiontime: 539664 s
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | nevents: 1000
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | neventsw: 0
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | pid: 27877
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | pgrp: 27877
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | corecount: 8
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | event service: False
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 11: 2284610, 69987: 2341123, 69991: 2350301, 69997: 2350491}
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | --------------------------------------------------
[2025-11-26 18:59:33] 2025-11-26 23:59:01,449 | INFO     | 
[2025-11-26 18:59:33] 2025-11-26 23:59:01,450 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 18:59:33] 2025-11-26 23:59:01,464 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,464 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,464 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,464 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,465 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,466 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:59:33] 2025-11-26 23:59:01,467 | INFO     | job 6896297852 has completed (purged errors)
[2025-11-26 18:59:33] 2025-11-26 23:59:01,467 | INFO     | overall cleanup function is called
[2025-11-26 18:59:33] 2025-11-26 23:59:02,479 | INFO     | --- collectZombieJob: --- 10, [27877]
[2025-11-26 18:59:33] 2025-11-26 23:59:02,479 | INFO     | zombie collector waiting for pid 27877
[2025-11-26 18:59:33] 2025-11-26 23:59:02,479 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:59:33] 2025-11-26 23:59:02,480 | INFO     | collected zombie processes
[2025-11-26 18:59:33] 2025-11-26 23:59:02,480 | INFO     | will attempt to kill all subprocesses of pid=27877
[2025-11-26 18:59:33] 2025-11-26 23:59:02,652 | INFO     | process IDs to be killed: [27877] (in reverse order)
[2025-11-26 18:59:33] 2025-11-26 23:59:02,697 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:59:33] 2025-11-26 23:59:02,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:59:33] 2025-11-26 23:59:02,700 | INFO     | did not find any defunct processes belonging to 27877
[2025-11-26 18:59:33] 2025-11-26 23:59:02,703 | INFO     | did not find any defunct processes belonging to 27877
[2025-11-26 18:59:33] 2025-11-26 23:59:02,705 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:59:33] 2025-11-26 23:59:02,705 | INFO     | ready for new job
[2025-11-26 18:59:33] 2025-11-26 23:59:02,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:59:33] 2025-11-26 23:59:02,709 | INFO     | ***************************************
[2025-11-26 18:59:33] 2025-11-26 23:59:02,709 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:59:33] 2025-11-26 23:59:02,709 | INFO     | ***************************************
[2025-11-26 18:59:33] 2025-11-26 23:59:02,709 | INFO     | 
[2025-11-26 18:59:33] 2025-11-26 23:59:02,710 | INFO     | architecture information:
[2025-11-26 18:59:33] 2025-11-26 23:59:02,711 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:59:33] 2025-11-26 23:59:02,722 | INFO     | cat /etc/os-release:
[2025-11-26 18:59:33] NAME="CentOS Linux"
[2025-11-26 18:59:33] VERSION="7 (Core)"
[2025-11-26 18:59:33] ID="centos"
[2025-11-26 18:59:33] ID_LIKE="rhel fedora"
[2025-11-26 18:59:33] VERSION_ID="7"
[2025-11-26 18:59:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:59:33] ANSI_COLOR="0;31"
[2025-11-26 18:59:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:59:33] HOME_URL="https://www.centos.org/"
[2025-11-26 18:59:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:59:33] 
[2025-11-26 18:59:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:59:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:59:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:59:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:59:33] 
[2025-11-26 18:59:33] 2025-11-26 23:59:02,722 | INFO     | ***************************************
[2025-11-26 18:59:33] 2025-11-26 23:59:03,225 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 18:59:33] 2025-11-26 23:59:03,240 | INFO     | sufficient remaining disk space (24216862720 B)
[2025-11-26 18:59:33] 2025-11-26 23:59:03,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:59:33] 2025-11-26 23:59:03,241 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:59:33] 2025-11-26 23:59:03,241 | INFO     | update_server=False
[2025-11-26 18:59:33] 2025-11-26 23:59:03,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:59:33] 2025-11-26 23:59:03,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:59:33] 2025-11-26 23:59:03,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:59:33] 2025-11-26 23:59:03,242 | INFO     | aborting loop
[2025-11-26 18:59:33] 2025-11-26 23:59:03,255 | INFO     | all data control threads have been joined
[2025-11-26 18:59:33] 2025-11-26 23:59:03,871 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:59:33] 2025-11-26 23:59:04,247 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:04,247 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:04,260 | INFO     | [data] control thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:04,281 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:04,333 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:04,399 | INFO     | all job control threads have been joined
[2025-11-26 18:59:33] 2025-11-26 23:59:04,501 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:04,699 | INFO     | all payload control threads have been joined
[2025-11-26 18:59:33] 2025-11-26 23:59:04,802 | INFO     | [job] validate thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,041 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,092 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,168 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,247 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:59:33] 2025-11-26 23:59:05,404 | INFO     | [job] control thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,504 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,704 | INFO     | [payload] control thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:05,985 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:59:33] 2025-11-26 23:59:06,991 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:09,260 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:59:33] 2025-11-26 23:59:09,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140275511121728)>', '<ExcThread(monitor, started 140274546231040)>']
[2025-11-26 18:59:33] 2025-11-26 23:59:14,881 | INFO     | all workflow threads have been joined
[2025-11-26 18:59:33] 2025-11-26 23:59:14,881 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:59:33] 2025-11-26 23:59:14,882 | INFO     | traces error code: 0
[2025-11-26 18:59:33] 2025-11-26 23:59:14,884 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:59:33] 2025-11-26 23:59:33,589 | INFO     | PID=8080 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 18:59:33] 2025-11-26 23:59:33,590 | INFO     | .. there are 3 such processes running
[2025-11-26 18:59:33] 2025-11-26 23:59:33,590 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:59:33] 2025-11-26 23:59:33,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:59:33] 2025-11-26 23:59:33,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:59:33] 2025-11-26 23:59:33,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:59:33] 2025-11-26 23:59:33,590 | INFO     | [monitor] control thread has ended
[2025-11-26 18:59:33] 2025-11-26 23:59:33,685 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:59:33] 2025-11-26 23:59:33,687 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:59:33] 2025-11-26 23:59:33,690 [wrapper] pilotpid: 8080
[2025-11-26 18:59:33] 2025-11-26 23:59:33,692 [wrapper] Pilot exit status: 0
[2025-11-26 18:59:33] 2025-11-26 23:59:33,700 [wrapper] pandaids: 6896297852 6896297852
[2025-11-26 18:59:33] 2025-11-26 23:59:33,727 [wrapper] cleanup supervisor_pilot   407 8081
[2025-11-26 18:59:33] 2025-11-26 23:59:33,730 [wrapper] Test setup, not cleaning
[2025-11-26 18:59:33] 2025-11-26 23:59:33,732 [wrapper] apfmon messages muted
[2025-11-26 18:59:33] 2025-11-26 23:59:33,735 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:59:33] 2025-11-26 23:59:33,737 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:59:33]  *** Error codes and diagnostics ***
[2025-11-26 18:59:33]     "exeErrorCode": 0,
[2025-11-26 18:59:33]     "exeErrorDiag": "",
[2025-11-26 18:59:33]     "pilotErrorCode": 0,
[2025-11-26 18:59:33]     "pilotErrorDiag": "",
[2025-11-26 18:59:33]  *** Listing of results directory ***
[2025-11-26 18:59:33] total 1717416
[2025-11-26 18:59:33] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 20:13 pilot3.tar.gz
[2025-11-26 18:59:33] -rwx------ 1 boincer umatlas     36292 Nov 24 20:31 runpilot2-wrapper.sh
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 20:31 queuedata.json
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas       100 Nov 25 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:59:33] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 16:43 run_atlas
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas       105 Nov 25 16:43 job.xml
[2025-11-26 18:59:33] -rw-r--r-- 3 boincer umatlas 409002190 Nov 25 16:43 EVNT.47483658._001472.pool.root.1
[2025-11-26 18:59:33] -rw-r--r-- 3 boincer umatlas 409002190 Nov 25 16:43 ATLAS.root_0
[2025-11-26 18:59:33] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 16:43 start_atlas.sh
[2025-11-26 18:59:33] drwxrwx--x 2 boincer umatlas      4096 Nov 25 16:43 shared
[2025-11-26 18:59:33] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 16:43 input.tar.gz
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas         0 Nov 25 16:43 boinc_lockfile
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 23:31 pandaJob.out
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas        57 Nov 25 23:31 setup.sh.local
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas    991877 Nov 25 23:32 agis_schedconf.cvmfs.json
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas       533 Nov 26 18:46 boinc_task_state.xml
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas      5953 Nov 26 18:58 init_data.xml
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas 912664699 Nov 26 18:58 HITS.47556149._004586.pool.root.1
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas        96 Nov 26 18:58 pilot_heartbeat.json
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas      1065 Nov 26 18:58 memory_monitor_summary.json
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas   1516240 Nov 26 18:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas   2326232 Nov 26 18:58 log.47556149._004586.job.log.tgz.1
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas      8663 Nov 26 18:59 heartbeat.json
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 18:59 boinc_mmap_file
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas        29 Nov 26 18:59 wrapper_checkpoint.txt
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas       819 Nov 26 18:59 pilotlog.txt
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas   9698376 Nov 26 18:59 log.47556149._004586.job.log.1
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas       353 Nov 26 18:59 output.list
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas       620 Nov 26 18:59 runtime_log
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas  12042240 Nov 26 18:59 result.tar.gz
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas      9423 Nov 26 18:59 runtime_log.err
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas       792 Nov 26 18:59 Ll5LDmG5wh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmv2LKDmnL3Nfm.diag
[2025-11-26 18:59:33] -rw-r--r-- 1 boincer umatlas     23431 Nov 26 18:59 stderr.txt
[2025-11-26 18:59:33] HITS file was successfully produced:
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas 912664699 Nov 26 18:58 shared/HITS.pool.root.1
[2025-11-26 18:59:33]  *** Contents of shared directory: ***
[2025-11-26 18:59:33] total 1303056
[2025-11-26 18:59:33] -rw-r--r-- 3 boincer umatlas 409002190 Nov 25 16:43 ATLAS.root_0
[2025-11-26 18:59:33] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 16:43 start_atlas.sh
[2025-11-26 18:59:33] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 16:43 input.tar.gz
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas 912664699 Nov 26 18:58 HITS.pool.root.1
[2025-11-26 18:59:33] -rw------- 1 boincer umatlas  12042240 Nov 26 18:59 result.tar.gz
18:59:35 (29180): run_atlas exited; CPU time 538501.690523
18:59:35 (29180): called boinc_finish(0)

</stderr_txt>
]]>

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