Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:17 (2396680): wrapper (7.7.26015): starting
13:36:17 (2396680): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 13:36:17] Arguments: --nthreads 12
[2025-11-25 13:36:17] Threads: 12
[2025-11-25 13:36:17] Checking for CVMFS
[2025-11-25 13:36:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 13:36:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 13:36:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 13:36:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 13:36:17] 2.11.5.0 3259785 27178 205736 153298 0 363 26613002 45568001 20127 130560 0 272116758 99.792 163411819 13922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 13:36:17] CVMFS is ok
[2025-11-25 13:36:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 13:36:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 13:36:17] Further information can be found at the LHC@home message board.
[2025-11-25 13:36:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 13:36:17] Checking for apptainer binary...
[2025-11-25 13:36:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 13:36:17] Running /usr/bin/apptainer --version
[2025-11-25 13:36:17] apptainer version 1.4.1-1.el9
[2025-11-25 13:36:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 13:36:17] wns0092.triumf.lcg
[2025-11-25 13:36:17] apptainer works
[2025-11-25 13:36:17] Set ATHENA_PROC_NUMBER=12
[2025-11-25 13:36:17] Set ATHENA_CORE_NUMBER=12
[2025-11-25 13:36:17] Starting ATLAS job with PandaID=6896296796
[2025-11-25 13:36:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:40:33]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | wrong length of table data, x=[1764106611.0], y=[1406.0] (must be same and length>=4)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | could have reported an average CPU frequency of 2724 MHz (4 samples)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | ..............................
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . Timing measurements:
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . get job = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . initial setup = 2 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . payload setup = 4 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . stage-in = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . payload execution = 48 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . stage-out = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . log creation = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | ..............................
[2025-11-25 13:40:33] 2025-11-25 21:39:41,931 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 13:40:33] 2025-11-25 21:39:41,931 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896296796/pilotlog.txt
[2025-11-25 13:40:33] 2025-11-25 21:39:41,942 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 13:40:33] - Log from pilotlog.txt -
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896296796/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | INFO     | extracted standard info from prmon json
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | wrong length of table data, x=[1764106611.0], y=[1406.0] (must be same and length>=4)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | could have reported an average CPU frequency of 2724 MHz (4 samples)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | ..............................
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . Timing measurements:
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . get job = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . initial setup = 2 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . payload setup = 4 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . stage-in = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . payload execution = 48 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . stage-out = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . log creation = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | ..............................
[2025-11-25 13:40:33] 2025-11-25 21:39:41,931 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 13:40:33] 2025-11-25 21:39:41,931 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896296796/pilotlog.txt
[2025-11-25 13:40:33] 2025-11-25 21:39:41,942 | WARNING  | 
[2025-11-25 13:40:33] [begin log extracts]
[2025-11-25 13:40:33] - Log from pilotlog.txt -
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6896296796/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | INFO     | extracted standard info from prmon json
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:40:33] 2025-11-25 21:39:41,928 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 13:40:33] 2025-11-25 21:39:41,929 | WARNING  | wrong length of table data, x=[1764106611.0], y=[1406.0] (must be same and length>=4)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | could have reported an average CPU frequency of 2724 MHz (4 samples)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | ..............................
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . Timing measurements:
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . get job = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . initial setup = 2 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . payload setup = 4 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . stage-in = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . payload execution = 48 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . stage-out = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | . log creation = 0 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,930 | INFO     | ..............................
[2025-11-25 13:40:33] 2025-11-25 21:39:41,931 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 13:40:33] 2025-11-25 21:39:41,931 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896296796/pilotlog.txt
[2025-11-25 13:40:33] [end log extracts]
[2025-11-25 13:40:33] 2025-11-25 21:39:41,942 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,943 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 13:40:33] 2025-11-25 21:39:41,985 | INFO     | time since job start (194s) is within the limit (172800.0s)
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | 
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | job summary report
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | --------------------------------------------------
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | PanDA job id: 6896296796
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | task id: 47556149
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 13:37:32,028 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 13:40:33] 2025-11-25 21:39:41,996 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | pilot state: failed 
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | transexitcode: 65
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | exeerrorcode: 65
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | exitcode: 65
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | cpuconsumptiontime: 41 s
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | nevents: 0
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | neventsw: 0
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | pid: 2406903
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | pgrp: 2406903
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | corecount: 12
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | event service: False
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | sizes: {0: 2284141, 1: 2284340, 4: 2284602, 11: 2284630, 57: 2314425, 59: 2314425, 180: 2314719}
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | --------------------------------------------------
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | 
[2025-11-25 13:40:33] 2025-11-25 21:39:41,997 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | job 6896296796 has completed (purged errors)
[2025-11-25 13:40:33] 2025-11-25 21:39:42,013 | INFO     | overall cleanup function is called
[2025-11-25 13:40:33] 2025-11-25 21:39:43,021 | INFO     | --- collectZombieJob: --- 10, [2406903]
[2025-11-25 13:40:33] 2025-11-25 21:39:43,021 | INFO     | zombie collector waiting for pid 2406903
[2025-11-25 13:40:33] 2025-11-25 21:39:43,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:40:33] 2025-11-25 21:39:43,021 | INFO     | collected zombie processes
[2025-11-25 13:40:33] 2025-11-25 21:39:43,021 | INFO     | will attempt to kill all subprocesses of pid=2406903
[2025-11-25 13:40:33] 2025-11-25 21:39:43,173 | INFO     | process IDs to be killed: [2406903] (in reverse order)
[2025-11-25 13:40:33] 2025-11-25 21:39:43,231 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:40:33] 2025-11-25 21:39:43,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:40:33] 2025-11-25 21:39:43,238 | INFO     | did not find any defunct processes belonging to 2406903
[2025-11-25 13:40:33] 2025-11-25 21:39:43,243 | INFO     | did not find any defunct processes belonging to 2406903
[2025-11-25 13:40:33] 2025-11-25 21:39:43,244 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:40:33] 2025-11-25 21:39:43,244 | INFO     | ready for new job
[2025-11-25 13:40:33] 2025-11-25 21:39:43,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:40:33] 2025-11-25 21:39:43,246 | INFO     | ***************************************
[2025-11-25 13:40:33] 2025-11-25 21:39:43,246 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:40:33] 2025-11-25 21:39:43,246 | INFO     | ***************************************
[2025-11-25 13:40:33] 2025-11-25 21:39:43,246 | INFO     | 
[2025-11-25 13:40:33] 2025-11-25 21:39:43,248 | INFO     | architecture information:
[2025-11-25 13:40:33] 2025-11-25 21:39:43,248 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:40:33] 2025-11-25 21:39:43,258 | INFO     | cat /etc/os-release:
[2025-11-25 13:40:33] NAME="CentOS Linux"
[2025-11-25 13:40:33] VERSION="7 (Core)"
[2025-11-25 13:40:33] ID="centos"
[2025-11-25 13:40:33] ID_LIKE="rhel fedora"
[2025-11-25 13:40:33] VERSION_ID="7"
[2025-11-25 13:40:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:40:33] ANSI_COLOR="0;31"
[2025-11-25 13:40:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:40:33] HOME_URL="https://www.centos.org/"
[2025-11-25 13:40:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:40:33] 
[2025-11-25 13:40:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:40:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:40:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:40:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:40:33] 
[2025-11-25 13:40:33] 2025-11-25 21:39:43,258 | INFO     | ***************************************
[2025-11-25 13:40:33] 2025-11-25 21:39:43,762 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 13:40:33] 2025-11-25 21:39:43,775 | INFO     | sufficient remaining disk space (1897138225152 B)
[2025-11-25 13:40:33] 2025-11-25 21:39:43,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:40:33] 2025-11-25 21:39:43,775 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:40:33] 2025-11-25 21:39:43,775 | INFO     | update_server=False
[2025-11-25 13:40:33] 2025-11-25 21:39:43,775 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:40:33] 2025-11-25 21:39:43,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:40:33] 2025-11-25 21:39:43,776 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 13:40:33] 2025-11-25 21:39:43,776 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:40:33] 2025-11-25 21:39:43,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:40:33] 2025-11-25 21:39:43,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:40:33] 2025-11-25 21:39:44,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:40:33] 2025-11-25 21:39:44,210 | INFO     | aborting loop
[2025-11-25 13:40:33] 2025-11-25 21:39:44,335 | INFO     | all payload control threads have been joined
[2025-11-25 13:40:33] 2025-11-25 21:39:44,558 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:40:33] 2025-11-25 21:39:44,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:40:33] 2025-11-25 21:39:44,757 | INFO     | all data control threads have been joined
[2025-11-25 13:40:33] 2025-11-25 21:39:44,781 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:44,786 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:44,790 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,068 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,152 | INFO     | all job control threads have been joined
[2025-11-25 13:40:33] 2025-11-25 21:39:45,215 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,340 | INFO     | [payload] control thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,340 | INFO     | [job] validate thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,497 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,633 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,763 | INFO     | [data] control thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:45,888 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:46,159 | INFO     | [job] control thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:46,268 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:46,591 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:39:48,564 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:40:33] 2025-11-25 21:40:27,170 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:40:33] 2025-11-25 21:40:28,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573291796288)>', '<ExcThread(monitor, started 140572895454976)>']
[2025-11-25 13:40:33] 2025-11-25 21:40:29,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:40:33] 2025-11-25 21:40:29,020 | INFO     | [monitor] control thread has ended
[2025-11-25 13:40:33] 2025-11-25 21:40:33,637 | INFO     | all workflow threads have been joined
[2025-11-25 13:40:33] 2025-11-25 21:40:33,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:40:33] 2025-11-25 21:40:33,638 | INFO     | traces error code: 0
[2025-11-25 13:40:33] 2025-11-25 21:40:33,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:40:33] 2025-11-25 21:40:33,778 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:40:33] 2025-11-25 21:40:33,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:40:33] 2025-11-25 21:40:33,783 [wrapper] pilotpid: 2400331
[2025-11-25 13:40:33] 2025-11-25 21:40:33,785 [wrapper] Pilot exit status: 0
[2025-11-25 13:40:33] 2025-11-25 21:40:33,794 [wrapper] pandaids: 6896296796
[2025-11-25 13:40:33] 2025-11-25 21:40:33,836 [wrapper] cleanup supervisor_pilot 2400337 2400332
[2025-11-25 13:40:33] 2025-11-25 21:40:33,839 [wrapper] Test setup, not cleaning
[2025-11-25 13:40:33] 2025-11-25 21:40:33,841 [wrapper] apfmon messages muted
[2025-11-25 13:40:33] 2025-11-25 21:40:33,843 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:40:33] 2025-11-25 21:40:33,846 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:40:33]  *** Error codes and diagnostics ***
[2025-11-25 13:40:33]     "exeErrorCode": 65,
[2025-11-25 13:40:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 13:40:33]     "pilotErrorCode": 1305,
[2025-11-25 13:40:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 13:40:33]  *** Listing of results directory ***
[2025-11-25 13:40:33] total 403600
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc    576529 Nov 24 16:10 pilot3.tar.gz
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc      5112 Nov 24 16:28 queuedata.json
[2025-11-25 13:40:33] -rwx------. 1 boinc boinc     36292 Nov 24 16:28 runpilot2-wrapper.sh
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc       100 Nov 25 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:40:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 13:36 run_atlas
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc       105 Nov 25 13:36 job.xml
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc      6595 Nov 25 13:36 init_data.xml
[2025-11-25 13:40:33] -rw-r--r--. 2 boinc boinc 409090593 Nov 25 13:36 EVNT.47483658._001453.pool.root.1
[2025-11-25 13:40:33] -rw-r--r--. 2 boinc boinc     15847 Nov 25 13:36 start_atlas.sh
[2025-11-25 13:40:33] drwxrwx--x. 2 boinc boinc      4096 Nov 25 13:36 shared
[2025-11-25 13:40:33] -rw-r--r--. 2 boinc boinc    590101 Nov 25 13:36 input.tar.gz
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc         0 Nov 25 13:36 boinc_lockfile
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc      2786 Nov 25 13:36 pandaJob.out
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc    991893 Nov 25 13:36 agis_schedconf.cvmfs.json
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc   1516240 Nov 25 13:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:40:33] drwx------. 5 boinc boinc      4096 Nov 25 13:36 pilot3
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc       523 Nov 25 13:37 boinc_task_state.xml
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc       946 Nov 25 13:37 memory_monitor_summary.json
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc     46886 Nov 25 13:37 log.47556149._004392.job.log.tgz.1
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc        95 Nov 25 13:39 pilot_heartbeat.json
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc     10322 Nov 25 13:39 heartbeat.json
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc        23 Nov 25 13:40 wrapper_checkpoint.txt
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc      8192 Nov 25 13:40 boinc_mmap_file
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc      4551 Nov 25 13:40 pilotlog.txt
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc     92802 Nov 25 13:40 log.47556149._004392.job.log.1
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc       186 Nov 25 13:40 output.list
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc       620 Nov 25 13:40 runtime_log
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc    163840 Nov 25 13:40 result.tar.gz
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc       645 Nov 25 13:40 ydrNDm55vh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRFJKDm71cTMm.diag
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc      8636 Nov 25 13:40 runtime_log.err
[2025-11-25 13:40:33] -rw-r--r--. 1 boinc boinc     22337 Nov 25 13:40 stderr.txt
[2025-11-25 13:40:33] No HITS result produced
[2025-11-25 13:40:33]  *** Contents of shared directory: ***
[2025-11-25 13:40:33] total 400264
[2025-11-25 13:40:33] -rw-r--r--. 2 boinc boinc 409090593 Nov 25 13:36 ATLAS.root_0
[2025-11-25 13:40:33] -rw-r--r--. 2 boinc boinc     15847 Nov 25 13:36 start_atlas.sh
[2025-11-25 13:40:33] -rw-r--r--. 2 boinc boinc    590101 Nov 25 13:36 input.tar.gz
[2025-11-25 13:40:33] -rw-------. 1 boinc boinc    163840 Nov 25 13:40 result.tar.gz
13:40:35 (2396680): run_atlas exited; CPU time 39.404172
13:40:35 (2396680): called boinc_finish(0)

</stderr_txt>
]]>

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