Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:39 (4112715): wrapper (7.7.26015): starting
00:04:39 (4112715): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 00:04:39] Arguments: --nthreads 12
[2025-11-26 00:04:39] Threads: 12
[2025-11-26 00:04:39] Checking for CVMFS
[2025-11-26 00:04:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:41] 2.13.2.0 8445 34895 208300 153309 3 390 38171325 40960000 20049 16776704 0 74844876 99.784 38579261 35920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:41] CVMFS is ok
[2025-11-26 00:04:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:41] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:41] Checking for apptainer binary...
[2025-11-26 00:04:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:41] Running /usr/bin/apptainer --version
[2025-11-26 00:04:41] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:42] c-212-2.aglt2.org
[2025-11-26 00:04:42] apptainer works
[2025-11-26 00:04:42] Set ATHENA_PROC_NUMBER=12
[2025-11-26 00:04:42] Set ATHENA_CORE_NUMBER=12
[2025-11-26 00:04:42] Starting ATLAS job with PandaID=6896297818
[2025-11-26 00:04:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:25:37]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:25:37] 2025-11-27 10:24:15,448 | INFO     | 105546s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 05:25:37] 2025-11-27 10:24:15,883 | INFO     | monitor loop #5641: job 0:6896297818 is in state 'finished'
[2025-11-27 05:25:37] 2025-11-27 10:24:15,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:25:37] 2025-11-27 10:24:17,455 | INFO     | time since job start (105545s) is within the limit (172800.0s)
[2025-11-27 05:25:37] 2025-11-27 10:24:18,391 | INFO     | monitor loop #5642: job 0:6896297818 is in state 'finished'
[2025-11-27 05:25:37] 2025-11-27 10:24:18,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:25:37] 2025-11-27 10:24:19,463 | INFO     | time since job start (105547s) is within the limit (172800.0s)
[2025-11-27 05:25:37] 2025-11-27 10:24:20,899 | INFO     | monitor loop #5643: job 0:6896297818 is in state 'finished'
[2025-11-27 05:25:37] 2025-11-27 10:24:20,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:25:37] 2025-11-27 10:24:21,475 | INFO     | time since job start (105549s) is within the limit (172800.0s)
[2025-11-27 05:25:37] 2025-11-27 10:24:23,408 | INFO     | monitor loop #5644: job 0:6896297818 is in state 'finished'
[2025-11-27 05:25:37] 2025-11-27 10:24:23,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:25:37] 2025-11-27 10:24:23,484 | INFO     | time since job start (105551s) is within the limit (172800.0s)
[2025-11-27 05:25:37] 2025-11-27 10:24:25,551 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:25:37] 2025-11-27 10:24:25,562 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3005.4997916666666
[2025-11-27 05:25:37] 2025-11-27 10:24:25,603 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896297818/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:25:37] 2025-11-27 10:24:25,603 | INFO     | extracted standard info from prmon json
[2025-11-27 05:25:37] 2025-11-27 10:24:25,603 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:25:37] 2025-11-27 10:24:25,604 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:25:37] 2025-11-27 10:24:25,732 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:25:37] 2025-11-27 10:24:25,770 | INFO     | sum of square deviations: 1602519064103.1897
[2025-11-27 05:25:37] 2025-11-27 10:24:25,920 | INFO     | sum of deviations: 5489841447325.65
[2025-11-27 05:25:37] 2025-11-27 10:24:25,920 | INFO     | mean x: 1764186298.7218046
[2025-11-27 05:25:37] 2025-11-27 10:24:25,920 | INFO     | mean y: 3460565.5980335455
[2025-11-27 05:25:37] 2025-11-27 10:24:25,921 | INFO     | intersect: -6040213597.45913
[2025-11-27 05:25:37] 2025-11-27 10:24:25,922 | INFO     | chi2: 27.32503155773272
[2025-11-27 05:25:37] 2025-11-27 10:24:25,924 | INFO     | sum of square deviations: 1588659198516.7383
[2025-11-27 05:25:37] 2025-11-27 10:24:25,931 | INFO     | monitor loop #5645: job 0:6896297818 is in state 'finished'
[2025-11-27 05:25:37] 2025-11-27 10:24:25,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 05:25:37] 2025-11-27 10:24:26,033 | INFO     | sum of deviations: 6195188229261.46
[2025-11-27 05:25:37] 2025-11-27 10:24:26,033 | INFO     | mean x: 1764186146.2470999
[2025-11-27 05:25:37] 2025-11-27 10:24:26,033 | INFO     | mean y: 3468325.2877030163
[2025-11-27 05:25:37] 2025-11-27 10:24:26,036 | INFO     | intersect: -6876210625.15084
[2025-11-27 05:25:37] 2025-11-27 10:24:26,037 | INFO     | chi2: 23.832328208346933
[2025-11-27 05:25:37] 2025-11-27 10:24:26,037 | INFO     | current chi2=23.832328208346933 (change=12.782065199106373 %)
[2025-11-27 05:25:37] 2025-11-27 10:24:26,037 | INFO     | right removable region: 1723
[2025-11-27 05:25:37] 2025-11-27 10:24:26,039 | INFO     | sum of square deviations: 1588650315435.2122
[2025-11-27 05:25:37] 2025-11-27 10:24:26,300 | INFO     | sum of deviations: 4906534067997.562
[2025-11-27 05:25:37] 2025-11-27 10:24:26,301 | INFO     | mean x: 1764186451.2453597
[2025-11-27 05:25:37] 2025-11-27 10:24:26,301 | INFO     | mean y: 3466976.3816705337
[2025-11-27 05:25:37] 2025-11-27 10:24:26,301 | INFO     | intersect: -5445209073.49136
[2025-11-27 05:25:37] 2025-11-27 10:24:26,302 | INFO     | chi2: 25.16313328630193
[2025-11-27 05:25:37] 2025-11-27 10:24:26,302 | INFO     | current chi2=25.16313328630193 (change=7.911786915462842 %)
[2025-11-27 05:25:37] 2025-11-27 10:24:26,303 | INFO     | left removable region: 10
[2025-11-27 05:25:37] 2025-11-27 10:24:26,308 | INFO     | sum of square deviations: 1558432183879.3008
[2025-11-27 05:25:37] 2025-11-27 10:24:27,137 | INFO     | sum of deviations: 5568544162517.407
[2025-11-27 05:25:37] 2025-11-27 10:24:27,138 | INFO     | mean x: 1764186420.7968476
[2025-11-27 05:25:37] 2025-11-27 10:24:27,138 | INFO     | mean y: 3478411.41214244
[2025-11-27 05:25:37] 2025-11-27 10:24:27,138 | INFO     | intersect: -6300260754.617311
[2025-11-27 05:25:37] 2025-11-27 10:24:27,139 | INFO     | chi2: 20.866516897181558
[2025-11-27 05:25:37] 2025-11-27 10:24:27,140 | INFO     | current memory leak: 3.57 B/s (using 1713 data points, chi2=20.87)
[2025-11-27 05:25:37] 2025-11-27 10:24:27,141 | INFO     | could have reported an average CPU frequency of 3048 MHz (61 samples)
[2025-11-27 05:25:37] 2025-11-27 10:24:27,141 | INFO     | ..............................
[2025-11-27 05:25:37] 2025-11-27 10:24:27,141 | INFO     | . Timing measurements:
[2025-11-27 05:25:37] 2025-11-27 10:24:27,141 | INFO     | . get job = 0 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | . initial setup = 2 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | . payload setup = 18 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | . stage-in = 0 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | . payload execution = 105461 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | . stage-out = 6 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | . log creation = 1 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,143 | INFO     | ..............................
[2025-11-27 05:25:37] 2025-11-27 10:24:27,276 | INFO     | 
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | job summary report
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | --------------------------------------------------
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | PanDA job id: 6896297818
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | task id: 47556149
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | errors: (none)
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | pilot state: finished 
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | transexitcode: 0
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | exeerrorcode: 0
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | exeerrordiag: 
[2025-11-27 05:25:37] 2025-11-27 10:24:27,277 | INFO     | exitcode: 0
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | exitmsg: OK
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | cpuconsumptiontime: 217900 s
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | nevents: 1000
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | neventsw: 0
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | pid: 4123573
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | pgrp: 4123573
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | corecount: 12
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | event service: False
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 3: 2284371, 13: 2284399, 20: 2284717, 25: 2284873, 105484: 2357983, 105485: 2357982, 105492: 2367032, 105494: 2367088, 
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | --------------------------------------------------
[2025-11-27 05:25:37] 2025-11-27 10:24:27,286 | INFO     | 
[2025-11-27 05:25:37] 2025-11-27 10:24:27,287 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 05:25:37] 2025-11-27 10:24:27,364 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,365 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,365 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,365 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,366 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | job 6896297818 has completed (purged errors)
[2025-11-27 05:25:37] 2025-11-27 10:24:27,367 | INFO     | overall cleanup function is called
[2025-11-27 05:25:37] 2025-11-27 10:24:27,500 | INFO     | PID=4116622 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:25:37] 2025-11-27 10:24:27,506 | INFO     | .. there are 18 such processes running
[2025-11-27 05:25:37] 2025-11-27 10:24:28,431 | INFO     | --- collectZombieJob: --- 10, [4123573]
[2025-11-27 05:25:37] 2025-11-27 10:24:28,431 | INFO     | zombie collector waiting for pid 4123573
[2025-11-27 05:25:37] 2025-11-27 10:24:28,431 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:25:37] 2025-11-27 10:24:28,431 | INFO     | collected zombie processes
[2025-11-27 05:25:37] 2025-11-27 10:24:28,431 | INFO     | will attempt to kill all subprocesses of pid=4123573
[2025-11-27 05:25:37] 2025-11-27 10:24:29,935 | INFO     | process IDs to be killed: [4123573] (in reverse order)
[2025-11-27 05:25:37] 2025-11-27 10:24:30,177 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:25:37] 2025-11-27 10:24:30,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:25:37] 2025-11-27 10:24:30,327 | INFO     | did not find any defunct processes belonging to 4123573
[2025-11-27 05:25:37] 2025-11-27 10:24:30,554 | INFO     | did not find any defunct processes belonging to 4123573
[2025-11-27 05:25:37] 2025-11-27 10:24:30,565 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:25:37] 2025-11-27 10:24:30,565 | INFO     | ready for new job
[2025-11-27 05:25:37] 2025-11-27 10:24:30,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:25:37] 2025-11-27 10:24:30,640 | INFO     | ***************************************
[2025-11-27 05:25:37] 2025-11-27 10:24:30,640 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:25:37] 2025-11-27 10:24:30,640 | INFO     | ***************************************
[2025-11-27 05:25:37] 2025-11-27 10:24:30,640 | INFO     | 
[2025-11-27 05:25:37] 2025-11-27 10:24:30,699 | INFO     | architecture information:
[2025-11-27 05:25:37] 2025-11-27 10:24:30,705 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:25:37] 2025-11-27 10:24:30,801 | INFO     | cat /etc/os-release:
[2025-11-27 05:25:37] NAME="CentOS Linux"
[2025-11-27 05:25:37] VERSION="7 (Core)"
[2025-11-27 05:25:37] ID="centos"
[2025-11-27 05:25:37] ID_LIKE="rhel fedora"
[2025-11-27 05:25:37] VERSION_ID="7"
[2025-11-27 05:25:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:25:37] ANSI_COLOR="0;31"
[2025-11-27 05:25:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:25:37] HOME_URL="https://www.centos.org/"
[2025-11-27 05:25:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:25:37] 
[2025-11-27 05:25:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:25:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:25:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:25:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:25:37] 
[2025-11-27 05:25:37] 2025-11-27 10:24:30,801 | INFO     | ***************************************
[2025-11-27 05:25:37] 2025-11-27 10:24:31,306 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 05:25:37] 2025-11-27 10:24:31,340 | INFO     | sufficient remaining disk space (120666980352 B)
[2025-11-27 05:25:37] 2025-11-27 10:24:31,340 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:25:37] 2025-11-27 10:24:31,340 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:25:37] 2025-11-27 10:24:31,340 | INFO     | update_server=False
[2025-11-27 05:25:37] 2025-11-27 10:24:31,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:25:37] 2025-11-27 10:24:31,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:25:37] 2025-11-27 10:24:31,390 | INFO     | all job control threads have been joined
[2025-11-27 05:25:37] 2025-11-27 10:24:31,392 | INFO     | all data control threads have been joined
[2025-11-27 05:25:37] 2025-11-27 10:24:31,698 | INFO     | all payload control threads have been joined
[2025-11-27 05:25:37] 2025-11-27 10:24:31,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:25:37] 2025-11-27 10:24:31,990 | INFO     | aborting loop
[2025-11-27 05:25:37] 2025-11-27 10:24:32,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:25:37] 2025-11-27 10:24:32,347 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:32,347 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:32,395 | INFO     | [job] control thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:32,398 | INFO     | [data] control thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:32,704 | INFO     | [payload] control thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:32,998 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:25:37] 2025-11-27 10:24:33,053 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,053 | INFO     | [job] validate thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,304 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,352 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,551 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,622 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,622 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,623 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:33,917 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:24:37,050 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:25:37] 2025-11-27 10:25:00,782 | INFO     | PID=4116622 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:25:37] 2025-11-27 10:25:00,782 | INFO     | .. there are 18 such processes running
[2025-11-27 05:25:37] 2025-11-27 10:25:00,783 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:25:37] 2025-11-27 10:25:00,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:25:37] 2025-11-27 10:25:00,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:25:37] 2025-11-27 10:25:29,838 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:25:37] 2025-11-27 10:25:31,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140423917786944)>', '<ExcThread(monitor, started 140423636944640)>']
[2025-11-27 05:25:37] 2025-11-27 10:25:31,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:25:37] 2025-11-27 10:25:31,964 | INFO     | [monitor] control thread has ended
[2025-11-27 05:25:37] 2025-11-27 10:25:36,803 | INFO     | all workflow threads have been joined
[2025-11-27 05:25:37] 2025-11-27 10:25:36,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:25:37] 2025-11-27 10:25:36,803 | INFO     | traces error code: 0
[2025-11-27 05:25:37] 2025-11-27 10:25:36,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:25:37] 2025-11-27 10:25:37,256 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:25:37] 2025-11-27 10:25:37,259 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:25:37] 2025-11-27 10:25:37,261 [wrapper] pilotpid: 4116622
[2025-11-27 05:25:37] 2025-11-27 10:25:37,263 [wrapper] Pilot exit status: 0
[2025-11-27 05:25:37] 2025-11-27 10:25:37,303 [wrapper] pandaids: 6896297818
[2025-11-27 05:25:37] 2025-11-27 10:25:37,524 [wrapper] cleanup supervisor_pilot 4056289 4116623
[2025-11-27 05:25:37] 2025-11-27 10:25:37,561 [wrapper] Test setup, not cleaning
[2025-11-27 05:25:37] 2025-11-27 10:25:37,589 [wrapper] apfmon messages muted
[2025-11-27 05:25:37] 2025-11-27 10:25:37,614 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:25:37] 2025-11-27 10:25:37,651 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:25:37]  *** Error codes and diagnostics ***
[2025-11-27 05:25:37]     "exeErrorCode": 0,
[2025-11-27 05:25:37]     "exeErrorDiag": "",
[2025-11-27 05:25:37]     "pilotErrorCode": 0,
[2025-11-27 05:25:37]     "pilotErrorDiag": "",
[2025-11-27 05:25:37]  *** Listing of results directory ***
[2025-11-27 05:25:37] total 1344356
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:11 queuedata.json
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 20:13 pilot3.tar.gz
[2025-11-27 05:25:37] -rwx------. 1 boincer umatlas     36292 Nov 24 20:14 runpilot2-wrapper.sh
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:25:37] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 05:25:37] -rw-r--r--. 2 boincer umatlas 410469631 Nov 26 00:04 EVNT.47483658._001469.pool.root.1
[2025-11-27 05:25:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 05:25:37] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 05:25:37] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:04 input.tar.gz
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:04 pandaJob.out
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 05:25:37] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas       533 Nov 27 04:39 boinc_task_state.xml
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 05:22 init_data.xml
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas 931340724 Nov 27 05:23 HITS.47556149._004552.pool.root.1
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas      1065 Nov 27 05:23 memory_monitor_summary.json
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:24 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas   3042818 Nov 27 05:24 log.47556149._004552.job.log.tgz.1
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas      8625 Nov 27 05:24 heartbeat.json
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas        95 Nov 27 05:25 pilot_heartbeat.json
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas      4825 Nov 27 05:25 pilotlog.txt
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas        29 Nov 27 05:25 wrapper_checkpoint.txt
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:25 boinc_mmap_file
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas  12399199 Nov 27 05:25 log.47556149._004552.job.log.1
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas       353 Nov 27 05:25 output.list
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:25 runtime_log
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas  15462400 Nov 27 05:25 result.tar.gz
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas      9341 Nov 27 05:25 runtime_log.err
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas       667 Nov 27 05:25 Ne6LDmnowh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmF2LKDm6M274n.diag
[2025-11-27 05:25:37] -rw-r--r--. 1 boincer umatlas     21920 Nov 27 05:25 stderr.txt
[2025-11-27 05:25:37] HITS file was successfully produced:
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas 931340724 Nov 27 05:23 shared/HITS.pool.root.1
[2025-11-27 05:25:37]  *** Contents of shared directory: ***
[2025-11-27 05:25:37] total 1326072
[2025-11-27 05:25:37] -rw-r--r--. 2 boincer umatlas 410469631 Nov 26 00:04 ATLAS.root_0
[2025-11-27 05:25:37] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 05:25:37] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:04 input.tar.gz
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas 931340724 Nov 27 05:23 HITS.pool.root.1
[2025-11-27 05:25:37] -rw-------. 1 boincer umatlas  15462400 Nov 27 05:25 result.tar.gz
05:25:39 (4112715): run_atlas exited; CPU time 218378.910371
05:25:39 (4112715): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN