Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:00:04 (2042591): wrapper (7.7.26015): starting
20:00:04 (2042591): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:00:04] Arguments: --nthreads 8
[2025-11-25 20:00:04] Threads: 8
[2025-11-25 20:00:04] Checking for CVMFS
[2025-11-25 20:00:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:00:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:00:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:00:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:00:05] 2.13.3.0 15551 27660 344460 153303 1 137 22612283 32935937 25513 16776704 0 50416724 99.563 60112786 39831 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:00:05] CVMFS is ok
[2025-11-25 20:00:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:00:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:00:05] Further information can be found at the LHC@home message board.
[2025-11-25 20:00:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:00:05] Checking for apptainer binary...
[2025-11-25 20:00:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:00:05] Running /usr/bin/apptainer --version
[2025-11-25 20:00:05] apptainer version 1.4.4-1.el9
[2025-11-25 20:00:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:00:06] c6-5-7-3.aglt2.org
[2025-11-25 20:00:06] apptainer works
[2025-11-25 20:00:06] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:00:06] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:00:06] Starting ATLAS job with PandaID=6896297568
[2025-11-25 20:00:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:57:28]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:57:28] 2025-11-26 13:56:52,479 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:57:28] 2025-11-26 13:56:53,442 | INFO     | time since job start (46576s) is within the limit (172800.0s)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,797 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:57:28] 2025-11-26 13:56:54,809 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3085.0908571428577
[2025-11-26 08:57:28] 2025-11-26 13:56:54,831 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896297568/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,832 | INFO     | extracted standard info from prmon json
[2025-11-26 08:57:28] 2025-11-26 13:56:54,832 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:57:28] 2025-11-26 13:56:54,832 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:57:28] 2025-11-26 13:56:54,856 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:57:28] 2025-11-26 13:56:54,857 | INFO     | sum of square deviations: 137186417791.58676
[2025-11-26 08:57:28] 2025-11-26 13:56:54,874 | INFO     | sum of deviations: 1234730459495.381
[2025-11-26 08:57:28] 2025-11-26 13:56:54,874 | INFO     | mean x: 1764142129.933071
[2025-11-26 08:57:28] 2025-11-26 13:56:54,874 | INFO     | mean y: 2897052.5761154857
[2025-11-26 08:57:28] 2025-11-26 13:56:54,874 | INFO     | intersect: -15875059801.845127
[2025-11-26 08:57:28] 2025-11-26 13:56:54,879 | INFO     | chi2: 5.468353041750049
[2025-11-26 08:57:28] 2025-11-26 13:56:54,880 | INFO     | sum of square deviations: 134503946879.292
[2025-11-26 08:57:28] 2025-11-26 13:56:54,897 | INFO     | sum of deviations: 1464379577463.2688
[2025-11-26 08:57:28] 2025-11-26 13:56:54,898 | INFO     | mean x: 1764141977.4491413
[2025-11-26 08:57:28] 2025-11-26 13:56:54,898 | INFO     | mean y: 2910100.64332893
[2025-11-26 08:57:28] 2025-11-26 13:56:54,902 | INFO     | intersect: -19203764078.521004
[2025-11-26 08:57:28] 2025-11-26 13:56:54,903 | INFO     | chi2: 2.7980162503285904
[2025-11-26 08:57:28] 2025-11-26 13:56:54,903 | INFO     | current chi2=2.7980162503285904 (change=48.83256020658946 %)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,904 | INFO     | sum of square deviations: 131856639634.03065
[2025-11-26 08:57:28] 2025-11-26 13:56:54,925 | INFO     | sum of deviations: 1475754655985.506
[2025-11-26 08:57:28] 2025-11-26 13:56:54,925 | INFO     | mean x: 1764141824.9640958
[2025-11-26 08:57:28] 2025-11-26 13:56:54,925 | INFO     | mean y: 2910746.796542553
[2025-11-26 08:57:28] 2025-11-26 13:56:54,925 | INFO     | intersect: -19741567189.509174
[2025-11-26 08:57:28] 2025-11-26 13:56:54,926 | INFO     | chi2: 2.6684967917428155
[2025-11-26 08:57:28] 2025-11-26 13:56:54,926 | INFO     | current chi2=2.6684967917428155 (change=4.628974494717981 %)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,926 | INFO     | right removable region: 751
[2025-11-26 08:57:28] 2025-11-26 13:56:54,927 | INFO     | sum of square deviations: 134502815939.29196
[2025-11-26 08:57:28] 2025-11-26 13:56:54,949 | INFO     | sum of deviations: 997302179177.2301
[2025-11-26 08:57:28] 2025-11-26 13:56:54,949 | INFO     | mean x: 1764142282.4491413
[2025-11-26 08:57:28] 2025-11-26 13:56:54,949 | INFO     | mean y: 2910533.278731836
[2025-11-26 08:57:28] 2025-11-26 13:56:54,949 | INFO     | intersect: -13077729677.698868
[2025-11-26 08:57:28] 2025-11-26 13:56:54,950 | INFO     | chi2: 2.9330510524424027
[2025-11-26 08:57:28] 2025-11-26 13:56:54,950 | INFO     | current chi2=2.9330510524424027 (change=46.36317315197097 %)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,952 | INFO     | sum of square deviations: 131854562591.88136
[2025-11-26 08:57:28] 2025-11-26 13:56:54,963 | INFO     | sum of deviations: 952548623270.6296
[2025-11-26 08:57:28] 2025-11-26 13:56:54,963 | INFO     | mean x: 1764142434.9614363
[2025-11-26 08:57:28] 2025-11-26 13:56:54,963 | INFO     | mean y: 2913109.1941489363
[2025-11-26 08:57:28] 2025-11-26 13:56:54,963 | INFO     | intersect: -12741670124.357763
[2025-11-26 08:57:28] 2025-11-26 13:56:54,964 | INFO     | chi2: 2.9045023253841853
[2025-11-26 08:57:28] 2025-11-26 13:56:54,964 | INFO     | current chi2=2.9045023253841853 (change=0.9733457259274232 %)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,964 | INFO     | left removable region: 20
[2025-11-26 08:57:28] 2025-11-26 13:56:54,965 | INFO     | sum of square deviations: 121114264252.70842
[2025-11-26 08:57:28] 2025-11-26 13:56:54,977 | INFO     | sum of deviations: 1118491037095.0872
[2025-11-26 08:57:28] 2025-11-26 13:56:54,978 | INFO     | mean x: 1764142404.492476
[2025-11-26 08:57:28] 2025-11-26 13:56:54,978 | INFO     | mean y: 2931141.924760602
[2025-11-26 08:57:28] 2025-11-26 13:56:54,978 | INFO     | intersect: -16288935714.212997
[2025-11-26 08:57:28] 2025-11-26 13:56:54,979 | INFO     | chi2: 0.061168599645772356
[2025-11-26 08:57:28] 2025-11-26 13:56:54,979 | INFO     | current memory leak: 9.24 B/s (using 731 data points, chi2=0.06)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,980 | INFO     | could have reported an average CPU frequency of 3086 MHz (29 samples)
[2025-11-26 08:57:28] 2025-11-26 13:56:54,980 | INFO     | ..............................
[2025-11-26 08:57:28] 2025-11-26 13:56:54,980 | INFO     | . Timing measurements:
[2025-11-26 08:57:28] 2025-11-26 13:56:54,980 | INFO     | . get job = 0 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,980 | INFO     | . initial setup = 2 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,981 | INFO     | . payload setup = 23 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,981 | INFO     | . stage-in = 0 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,981 | INFO     | . payload execution = 46484 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,981 | INFO     | . stage-out = 4 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,981 | INFO     | . log creation = 0 s
[2025-11-26 08:57:28] 2025-11-26 13:56:54,981 | INFO     | ..............................
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | 
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | job summary report
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | --------------------------------------------------
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | PanDA job id: 6896297568
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | task id: 47556149
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | errors: (none)
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:57:28] 2025-11-26 13:56:55,188 | INFO     | pilot state: finished 
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | transexitcode: 0
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | exeerrorcode: 0
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | exeerrordiag: 
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | exitcode: 0
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | exitmsg: OK
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | cpuconsumptiontime: 227408 s
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | nevents: 1000
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | neventsw: 0
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | pid: 2061776
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | pgrp: 2061776
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | corecount: 8
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | event service: False
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | sizes: {0: 2284264, 11: 2284264, 15: 2284554, 22: 2284582, 46511: 2331392, 46512: 2331391, 46517: 2340569, 46520: 2340625, 46539: 2340871}
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | --------------------------------------------------
[2025-11-26 08:57:28] 2025-11-26 13:56:55,189 | INFO     | 
[2025-11-26 08:57:28] 2025-11-26 13:56:55,190 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 08:57:28] 2025-11-26 13:56:55,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | job 6896297568 has completed (purged errors)
[2025-11-26 08:57:28] 2025-11-26 13:56:55,343 | INFO     | overall cleanup function is called
[2025-11-26 08:57:28] 2025-11-26 13:56:56,406 | INFO     | --- collectZombieJob: --- 10, [2061776]
[2025-11-26 08:57:28] 2025-11-26 13:56:56,406 | INFO     | zombie collector waiting for pid 2061776
[2025-11-26 08:57:28] 2025-11-26 13:56:56,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:57:28] 2025-11-26 13:56:56,406 | INFO     | collected zombie processes
[2025-11-26 08:57:28] 2025-11-26 13:56:56,406 | INFO     | will attempt to kill all subprocesses of pid=2061776
[2025-11-26 08:57:28] 2025-11-26 13:56:57,077 | INFO     | process IDs to be killed: [2061776] (in reverse order)
[2025-11-26 08:57:28] 2025-11-26 13:56:57,255 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:57:28] 2025-11-26 13:56:57,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:57:28] 2025-11-26 13:56:57,285 | INFO     | did not find any defunct processes belonging to 2061776
[2025-11-26 08:57:28] 2025-11-26 13:56:57,304 | INFO     | did not find any defunct processes belonging to 2061776
[2025-11-26 08:57:28] 2025-11-26 13:56:57,305 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:57:28] 2025-11-26 13:56:57,306 | INFO     | ready for new job
[2025-11-26 08:57:28] 2025-11-26 13:56:57,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:57:28] 2025-11-26 13:56:57,313 | INFO     | ***************************************
[2025-11-26 08:57:28] 2025-11-26 13:56:57,314 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:57:28] 2025-11-26 13:56:57,314 | INFO     | ***************************************
[2025-11-26 08:57:28] 2025-11-26 13:56:57,314 | INFO     | 
[2025-11-26 08:57:28] 2025-11-26 13:56:57,316 | INFO     | architecture information:
[2025-11-26 08:57:28] 2025-11-26 13:56:57,318 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:57:28] 2025-11-26 13:56:57,370 | INFO     | cat /etc/os-release:
[2025-11-26 08:57:28] NAME="CentOS Linux"
[2025-11-26 08:57:28] VERSION="7 (Core)"
[2025-11-26 08:57:28] ID="centos"
[2025-11-26 08:57:28] ID_LIKE="rhel fedora"
[2025-11-26 08:57:28] VERSION_ID="7"
[2025-11-26 08:57:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:57:28] ANSI_COLOR="0;31"
[2025-11-26 08:57:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:57:28] HOME_URL="https://www.centos.org/"
[2025-11-26 08:57:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:57:28] 
[2025-11-26 08:57:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:57:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:57:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:57:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:57:28] 
[2025-11-26 08:57:28] 2025-11-26 13:56:57,371 | INFO     | ***************************************
[2025-11-26 08:57:28] 2025-11-26 13:56:57,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 08:57:28] 2025-11-26 13:56:57,990 | INFO     | sufficient remaining disk space (71686946816 B)
[2025-11-26 08:57:28] 2025-11-26 13:56:57,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:57:28] 2025-11-26 13:56:57,991 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:57:28] 2025-11-26 13:56:57,991 | INFO     | update_server=False
[2025-11-26 08:57:28] 2025-11-26 13:56:57,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:57:28] 2025-11-26 13:56:58,395 | INFO     | all data control threads have been joined
[2025-11-26 08:57:28] 2025-11-26 13:56:58,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:57:28] 2025-11-26 13:56:58,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:57:28] 2025-11-26 13:56:58,519 | INFO     | aborting loop
[2025-11-26 08:57:28] 2025-11-26 13:56:58,724 | INFO     | all job control threads have been joined
[2025-11-26 08:57:28] 2025-11-26 13:56:58,997 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,200 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,356 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,363 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,401 | INFO     | [data] control thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,411 | INFO     | all payload control threads have been joined
[2025-11-26 08:57:28] 2025-11-26 13:56:59,505 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,525 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,624 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:57:28] 2025-11-26 13:56:59,769 | INFO     | [job] control thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:56:59,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:57:28] 2025-11-26 13:57:00,003 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:00,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:57:28] 2025-11-26 13:57:00,159 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:00,163 | INFO     | [job] validate thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:00,170 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:00,417 | INFO     | [payload] control thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:00,418 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:01,133 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:03,944 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:57:28] 2025-11-26 13:57:05,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730543224640)>', '<ExcThread(monitor, started 139729907476224)>']
[2025-11-26 08:57:28] 2025-11-26 13:57:10,389 | INFO     | all workflow threads have been joined
[2025-11-26 08:57:28] 2025-11-26 13:57:10,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:57:28] 2025-11-26 13:57:10,389 | INFO     | traces error code: 0
[2025-11-26 08:57:28] 2025-11-26 13:57:10,390 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:57:28] 2025-11-26 13:57:27,329 | INFO     | PID=2047360 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:57:28] 2025-11-26 13:57:27,329 | INFO     | .. there are 39 such processes running
[2025-11-26 08:57:28] 2025-11-26 13:57:27,330 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:57:28] 2025-11-26 13:57:27,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:57:28] 2025-11-26 13:57:27,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:57:28] 2025-11-26 13:57:27,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:57:28] 2025-11-26 13:57:27,330 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 08:57:28] 2025-11-26 13:57:27,330 | INFO     | [monitor] control thread has ended
[2025-11-26 08:57:28] 2025-11-26 13:57:27,528 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:57:28] 2025-11-26 13:57:27,533 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:57:28] 2025-11-26 13:57:27,536 [wrapper] pilotpid: 2047360
[2025-11-26 08:57:28] 2025-11-26 13:57:27,539 [wrapper] Pilot exit status: 0
[2025-11-26 08:57:28] 2025-11-26 13:57:27,619 [wrapper] pandaids: 6896297568
[2025-11-26 08:57:28] 2025-11-26 13:57:27,782 [wrapper] cleanup supervisor_pilot  188861 2047361
[2025-11-26 08:57:28] 2025-11-26 13:57:27,788 [wrapper] Test setup, not cleaning
[2025-11-26 08:57:28] 2025-11-26 13:57:27,791 [wrapper] apfmon messages muted
[2025-11-26 08:57:28] 2025-11-26 13:57:27,798 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:57:28] 2025-11-26 13:57:27,805 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:57:28]  *** Error codes and diagnostics ***
[2025-11-26 08:57:28]     "exeErrorCode": 0,
[2025-11-26 08:57:28]     "exeErrorDiag": "",
[2025-11-26 08:57:28]     "pilotErrorCode": 0,
[2025-11-26 08:57:28]     "pilotErrorDiag": "",
[2025-11-26 08:57:28]  *** Listing of results directory ***
[2025-11-26 08:57:28] total 1316460
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-26 08:57:28] -rwx------. 1 boincer umatlas     36292 Nov 24 20:03 runpilot2-wrapper.sh
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:03 queuedata.json
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas       100 Nov 25 20:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:57:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 20:00 run_atlas
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas       105 Nov 25 20:00 job.xml
[2025-11-26 08:57:28] -rw-r--r--. 2 boincer umatlas 409141328 Nov 25 20:00 EVNT.47483658._001466.pool.root.1
[2025-11-26 08:57:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:00 start_atlas.sh
[2025-11-26 08:57:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 20:00 shared
[2025-11-26 08:57:28] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 20:00 input.tar.gz
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas         0 Nov 25 20:00 boinc_lockfile
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 20:00 pandaJob.out
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas        57 Nov 25 20:00 setup.sh.local
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas    991877 Nov 25 20:00 agis_schedconf.cvmfs.json
[2025-11-26 08:57:28] drwx------. 5 boincer umatlas      4096 Nov 25 20:00 pilot3
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 08:46 init_data.xml
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:47 boinc_task_state.xml
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas 918773499 Nov 26 08:55 HITS.47556149._004528.pool.root.1
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas      1058 Nov 26 08:56 memory_monitor_summary.json
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas   1985378 Nov 26 08:56 log.47556149._004528.job.log.tgz.1
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas        95 Nov 26 08:56 pilot_heartbeat.json
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas      8629 Nov 26 08:56 heartbeat.json
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:57 boinc_mmap_file
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:57 wrapper_checkpoint.txt
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas       893 Nov 26 08:57 pilotlog.txt
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas   6128810 Nov 26 08:57 log.47556149._004528.job.log.1
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas       353 Nov 26 08:57 output.list
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:57 runtime_log
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas   8130560 Nov 26 08:57 result.tar.gz
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas       660 Nov 26 08:57 wqSKDmAewh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmn1LKDmEEx7Sm.diag
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 08:57 runtime_log.err
[2025-11-26 08:57:28] -rw-r--r--. 1 boincer umatlas     21340 Nov 26 08:57 stderr.txt
[2025-11-26 08:57:28] HITS file was successfully produced:
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas 918773499 Nov 26 08:55 shared/HITS.pool.root.1
[2025-11-26 08:57:28]  *** Contents of shared directory: ***
[2025-11-26 08:57:28] total 1305336
[2025-11-26 08:57:28] -rw-r--r--. 2 boincer umatlas 409141328 Nov 25 20:00 ATLAS.root_0
[2025-11-26 08:57:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 20:00 start_atlas.sh
[2025-11-26 08:57:28] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 20:00 input.tar.gz
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas 918773499 Nov 26 08:55 HITS.pool.root.1
[2025-11-26 08:57:28] -rw-------. 1 boincer umatlas   8130560 Nov 26 08:57 result.tar.gz
08:57:30 (2042591): run_atlas exited; CPU time 228567.608738
08:57:30 (2042591): called boinc_finish(0)

</stderr_txt>
]]>

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