Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:32:31 (7227): wrapper (7.7.26015): starting
17:32:31 (7227): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:32:31] Arguments: --nthreads 8
[2025-11-25 17:32:31] Threads: 8
[2025-11-25 17:32:31] Checking for CVMFS
[2025-11-25 17:32:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:32:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:32:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:32:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:32:31] 2.11.2.0 8539 116879 146904 153300 0 81 14322713 18432001 1885 130560 0 88313955 99.974 4855101 31564 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:32:31] CVMFS is ok
[2025-11-25 17:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:32:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:32:31] Further information can be found at the LHC@home message board.
[2025-11-25 17:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:32:31] Checking for apptainer binary...
[2025-11-25 17:32:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:32:31] Running /usr/bin/apptainer --version
[2025-11-25 17:32:31] apptainer version 1.3.2-1.el7
[2025-11-25 17:32:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:32:32] c-206-1.aglt2.org
[2025-11-25 17:32:32] apptainer works
[2025-11-25 17:32:32] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:32:32] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:32:32] Starting ATLAS job with PandaID=6896297139
[2025-11-25 17:32:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:31:52 (29181): wrapper (7.7.26015): starting
23:31:52 (29181): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:31:52] Arguments: --nthreads 8
[2025-11-25 23:31:52] Threads: 8
[2025-11-25 23:31:52] This job has been restarted, cleaning up previous attempt
[2025-11-25 23:31:52] Checking for CVMFS
[2025-11-25 23:31:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:31:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:31:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:31:53] 2.11.2.0 8539 117238 145984 153309 1 49 14371732 18432001 1 130560 0 88611702 99.975 4867968 31574 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 23:31:53] CVMFS is ok
[2025-11-25 23:31:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:31:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:31:53] Further information can be found at the LHC@home message board.
[2025-11-25 23:31:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:31:53] Checking for apptainer binary...
[2025-11-25 23:31:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:31:53] Running /usr/bin/apptainer --version
[2025-11-25 23:31:53] apptainer version 1.3.2-1.el7
[2025-11-25 23:31:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:31:54] c-206-1.aglt2.org
[2025-11-25 23:31:54] apptainer works
[2025-11-25 23:31:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:31:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:31:54] Starting ATLAS job with PandaID=6896297139
[2025-11-25 23:31:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:01:10]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:01:10] 2025-11-27 00:00:23,035 | INFO     | time since job start (70096s) is within the limit (172800.0s)
[2025-11-26 19:01:10] 2025-11-27 00:00:23,634 | INFO     | monitor loop #5005: job 0:6896297139 is in state 'finished'
[2025-11-26 19:01:10] 2025-11-27 00:00:23,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,413 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 19:01:10] 2025-11-27 00:00:24,418 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1856.625
[2025-11-26 19:01:10] 2025-11-27 00:00:24,423 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896297139/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,424 | INFO     | extracted standard info from prmon json
[2025-11-26 19:01:10] 2025-11-27 00:00:24,424 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:01:10] 2025-11-27 00:00:24,424 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:01:10] 2025-11-27 00:00:24,443 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:01:10] 2025-11-27 00:00:24,444 | INFO     | sum of square deviations: 470368574455.2081
[2025-11-26 19:01:10] 2025-11-27 00:00:24,470 | INFO     | sum of deviations: 2521591439508.645
[2025-11-26 19:01:10] 2025-11-27 00:00:24,470 | INFO     | mean x: 1764166568.6771104
[2025-11-26 19:01:10] 2025-11-27 00:00:24,470 | INFO     | mean y: 2916402.362924282
[2025-11-26 19:01:10] 2025-11-27 00:00:24,471 | INFO     | intersect: -9454576208.821627
[2025-11-26 19:01:10] 2025-11-27 00:00:24,472 | INFO     | chi2: 5.146126156363747
[2025-11-26 19:01:10] 2025-11-27 00:00:24,473 | INFO     | sum of square deviations: 464254911062.90607
[2025-11-26 19:01:10] 2025-11-27 00:00:24,498 | INFO     | sum of deviations: 2855116818112.2847
[2025-11-26 19:01:10] 2025-11-27 00:00:24,499 | INFO     | mean x: 1764166416.18007
[2025-11-26 19:01:10] 2025-11-27 00:00:24,499 | INFO     | mean y: 2924714.8723776224
[2025-11-26 19:01:10] 2025-11-27 00:00:24,499 | INFO     | intersect: -10846505382.16778
[2025-11-26 19:01:10] 2025-11-27 00:00:24,500 | INFO     | chi2: 2.577721418436851
[2025-11-26 19:01:10] 2025-11-27 00:00:24,500 | INFO     | current chi2=2.577721418436851 (change=49.90947870080454 %)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,501 | INFO     | sum of square deviations: 458194457970.58307
[2025-11-26 19:01:10] 2025-11-27 00:00:24,530 | INFO     | sum of deviations: 2902642127961.893
[2025-11-26 19:01:10] 2025-11-27 00:00:24,530 | INFO     | mean x: 1764166263.6830554
[2025-11-26 19:01:10] 2025-11-27 00:00:24,530 | INFO     | mean y: 2925906.398595259
[2025-11-26 19:01:10] 2025-11-27 00:00:24,530 | INFO     | intersect: -11172991280.326363
[2025-11-26 19:01:10] 2025-11-27 00:00:24,531 | INFO     | chi2: 2.3682361160548027
[2025-11-26 19:01:10] 2025-11-27 00:00:24,531 | INFO     | current chi2=2.3682361160548027 (change=8.126762685980305 %)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,532 | INFO     | right removable region: 1138
[2025-11-26 19:01:10] 2025-11-27 00:00:24,533 | INFO     | sum of square deviations: 464254436482.9061
[2025-11-26 19:01:10] 2025-11-27 00:00:24,558 | INFO     | sum of deviations: 2233045938590.9434
[2025-11-26 19:01:10] 2025-11-27 00:00:24,558 | INFO     | mean x: 1764166721.18007
[2025-11-26 19:01:10] 2025-11-27 00:00:24,558 | INFO     | mean y: 2923589.9274475523
[2025-11-26 19:01:10] 2025-11-27 00:00:24,558 | INFO     | intersect: -8482650315.565016
[2025-11-26 19:01:10] 2025-11-27 00:00:24,559 | INFO     | chi2: 3.1700888089244956
[2025-11-26 19:01:10] 2025-11-27 00:00:24,559 | INFO     | current chi2=3.1700888089244956 (change=38.39854071582884 %)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,560 | INFO     | sum of square deviations: 458193787948.03326
[2025-11-26 19:01:10] 2025-11-27 00:00:24,588 | INFO     | sum of deviations: 2135308275269.387
[2025-11-26 19:01:10] 2025-11-27 00:00:24,588 | INFO     | mean x: 1764166873.6795435
[2025-11-26 19:01:10] 2025-11-27 00:00:24,588 | INFO     | mean y: 2926048.973661106
[2025-11-26 19:01:10] 2025-11-27 00:00:24,588 | INFO     | intersect: -8218573725.596169
[2025-11-26 19:01:10] 2025-11-27 00:00:24,589 | INFO     | chi2: 3.0742349041570667
[2025-11-26 19:01:10] 2025-11-27 00:00:24,589 | INFO     | current chi2=3.0742349041570667 (change=3.023697774572724 %)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,590 | INFO     | left removable region: 20
[2025-11-26 19:01:10] 2025-11-27 00:00:24,591 | INFO     | sum of square deviations: 433315293662.6729
[2025-11-26 19:01:10] 2025-11-27 00:00:24,615 | INFO     | sum of deviations: 2370681000013.3765
[2025-11-26 19:01:10] 2025-11-27 00:00:24,615 | INFO     | mean x: 1764166843.185152
[2025-11-26 19:01:10] 2025-11-27 00:00:24,615 | INFO     | mean y: 2939277.1431127014
[2025-11-26 19:01:10] 2025-11-27 00:00:24,615 | INFO     | intersect: -9648870564.695599
[2025-11-26 19:01:10] 2025-11-27 00:00:24,616 | INFO     | chi2: 0.21724938272092814
[2025-11-26 19:01:10] 2025-11-27 00:00:24,617 | INFO     | current memory leak: 5.47 B/s (using 1118 data points, chi2=0.22)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,617 | INFO     | could have reported an average CPU frequency of 2562 MHz (42 samples)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | ..............................
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . Timing measurements:
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . get job = 0 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . initial setup = 2 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . payload setup = 6 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . stage-in = 0 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . payload execution = 70059 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . stage-out = 3 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,618 | INFO     | . log creation = 0 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,619 | INFO     | ..............................
[2025-11-26 19:01:10] 2025-11-27 00:00:24,837 | INFO     | 
[2025-11-26 19:01:10] 2025-11-27 00:00:24,837 | INFO     | job summary report
[2025-11-26 19:01:10] 2025-11-27 00:00:24,837 | INFO     | --------------------------------------------------
[2025-11-26 19:01:10] 2025-11-27 00:00:24,837 | INFO     | PanDA job id: 6896297139
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | task id: 47556149
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | errors: (none)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | pilot state: finished 
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | transexitcode: 0
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | exeerrorcode: 0
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | exeerrordiag: 
[2025-11-26 19:01:10] 2025-11-27 00:00:24,838 | INFO     | exitcode: 0
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | exitmsg: OK
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | cpuconsumptiontime: 549212 s
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | nevents: 1000
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | neventsw: 0
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | pid: 27280
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | pgrp: 27280
[2025-11-26 19:01:10] 2025-11-27 00:00:24,839 | INFO     | corecount: 8
[2025-11-26 19:01:10] 2025-11-27 00:00:24,840 | INFO     | event service: False
[2025-11-26 19:01:10] 2025-11-27 00:00:24,840 | INFO     | sizes: {0: 2284093, 1: 2284292, 5: 2284554, 11: 2284610, 70069: 2341095, 70074: 2350089, 70075: 2350273, 70081: 2350519}
[2025-11-26 19:01:10] 2025-11-27 00:00:24,840 | INFO     | --------------------------------------------------
[2025-11-26 19:01:10] 2025-11-27 00:00:24,840 | INFO     | 
[2025-11-26 19:01:10] 2025-11-27 00:00:24,840 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 19:01:10] 2025-11-27 00:00:24,857 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,857 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,857 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,859 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:01:10] 2025-11-27 00:00:24,860 | INFO     | job 6896297139 has completed (purged errors)
[2025-11-26 19:01:10] 2025-11-27 00:00:24,860 | INFO     | overall cleanup function is called
[2025-11-26 19:01:10] 2025-11-27 00:00:25,874 | INFO     | --- collectZombieJob: --- 10, [27280]
[2025-11-26 19:01:10] 2025-11-27 00:00:25,874 | INFO     | zombie collector waiting for pid 27280
[2025-11-26 19:01:10] 2025-11-27 00:00:25,874 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:01:10] 2025-11-27 00:00:25,874 | INFO     | collected zombie processes
[2025-11-26 19:01:10] 2025-11-27 00:00:25,875 | INFO     | will attempt to kill all subprocesses of pid=27280
[2025-11-26 19:01:10] 2025-11-27 00:00:25,994 | INFO     | process IDs to be killed: [27280] (in reverse order)
[2025-11-26 19:01:10] 2025-11-27 00:00:26,036 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:01:10] 2025-11-27 00:00:26,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:01:10] 2025-11-27 00:00:26,040 | INFO     | did not find any defunct processes belonging to 27280
[2025-11-26 19:01:10] 2025-11-27 00:00:26,043 | INFO     | did not find any defunct processes belonging to 27280
[2025-11-26 19:01:10] 2025-11-27 00:00:26,045 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:01:10] 2025-11-27 00:00:26,045 | INFO     | ready for new job
[2025-11-26 19:01:10] 2025-11-27 00:00:26,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:01:10] 2025-11-27 00:00:26,050 | INFO     | ***************************************
[2025-11-26 19:01:10] 2025-11-27 00:00:26,050 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:01:10] 2025-11-27 00:00:26,050 | INFO     | ***************************************
[2025-11-26 19:01:10] 2025-11-27 00:00:26,050 | INFO     | 
[2025-11-26 19:01:10] 2025-11-27 00:00:26,051 | INFO     | architecture information:
[2025-11-26 19:01:10] 2025-11-27 00:00:26,052 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:01:10] 2025-11-27 00:00:26,064 | INFO     | cat /etc/os-release:
[2025-11-26 19:01:10] NAME="CentOS Linux"
[2025-11-26 19:01:10] VERSION="7 (Core)"
[2025-11-26 19:01:10] ID="centos"
[2025-11-26 19:01:10] ID_LIKE="rhel fedora"
[2025-11-26 19:01:10] VERSION_ID="7"
[2025-11-26 19:01:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:01:10] ANSI_COLOR="0;31"
[2025-11-26 19:01:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:01:10] HOME_URL="https://www.centos.org/"
[2025-11-26 19:01:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:01:10] 
[2025-11-26 19:01:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:01:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:01:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:01:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:01:10] 
[2025-11-26 19:01:10] 2025-11-27 00:00:26,064 | INFO     | ***************************************
[2025-11-26 19:01:10] 2025-11-27 00:00:26,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 19:01:10] 2025-11-27 00:00:26,582 | INFO     | sufficient remaining disk space (24440209408 B)
[2025-11-26 19:01:10] 2025-11-27 00:00:26,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:01:10] 2025-11-27 00:00:26,583 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:01:10] 2025-11-27 00:00:26,583 | INFO     | update_server=False
[2025-11-26 19:01:10] 2025-11-27 00:00:26,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:01:10] 2025-11-27 00:00:26,584 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:01:10] 2025-11-27 00:00:27,014 | INFO     | all payload control threads have been joined
[2025-11-26 19:01:10] 2025-11-27 00:00:27,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:01:10] 2025-11-27 00:00:27,147 | INFO     | aborting loop
[2025-11-26 19:01:10] 2025-11-27 00:00:27,308 | INFO     | all data control threads have been joined
[2025-11-26 19:01:10] 2025-11-27 00:00:27,584 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:27,588 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:27,618 | INFO     | all job control threads have been joined
[2025-11-26 19:01:10] 2025-11-27 00:00:27,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:27,697 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,018 | INFO     | [payload] control thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:01:10] 2025-11-27 00:00:28,148 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,207 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,313 | INFO     | [data] control thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,336 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,526 | INFO     | [job] validate thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,589 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,623 | INFO     | [job] control thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:28,632 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:29,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:01:10] 2025-11-27 00:00:30,037 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:33,082 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:01:10] 2025-11-27 00:00:56,253 | INFO     | PID=8086 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 19:01:10] 2025-11-27 00:00:56,253 | INFO     | .. there are 3 such processes running
[2025-11-26 19:01:10] 2025-11-27 00:00:56,254 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:01:10] 2025-11-27 00:00:56,254 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:01:10] 2025-11-27 00:00:56,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:01:10] 2025-11-27 00:01:04,057 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:01:10] 2025-11-27 00:01:05,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139675904894784)>', '<ExcThread(monitor, started 139675457009408)>']
[2025-11-26 19:01:10] 2025-11-27 00:01:06,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:01:10] 2025-11-27 00:01:06,304 | INFO     | [monitor] control thread has ended
[2025-11-26 19:01:10] 2025-11-27 00:01:10,572 | INFO     | all workflow threads have been joined
[2025-11-26 19:01:10] 2025-11-27 00:01:10,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:01:10] 2025-11-27 00:01:10,573 | INFO     | traces error code: 0
[2025-11-26 19:01:10] 2025-11-27 00:01:10,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:01:10] 2025-11-27 00:01:10,786 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:01:10] 2025-11-27 00:01:10,789 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:01:10] 2025-11-27 00:01:10,792 [wrapper] pilotpid: 8086
[2025-11-26 19:01:10] 2025-11-27 00:01:10,794 [wrapper] Pilot exit status: 0
[2025-11-26 19:01:10] 2025-11-27 00:01:10,804 [wrapper] pandaids: 6896297139 6896297139
[2025-11-26 19:01:10] 2025-11-27 00:01:10,846 [wrapper] cleanup supervisor_pilot   411 8087
[2025-11-26 19:01:10] 2025-11-27 00:01:10,849 [wrapper] Test setup, not cleaning
[2025-11-26 19:01:10] 2025-11-27 00:01:10,852 [wrapper] apfmon messages muted
[2025-11-26 19:01:10] 2025-11-27 00:01:10,855 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:01:10] 2025-11-27 00:01:10,858 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:01:10]  *** Error codes and diagnostics ***
[2025-11-26 19:01:10]     "exeErrorCode": 0,
[2025-11-26 19:01:10]     "exeErrorDiag": "",
[2025-11-26 19:01:10]     "pilotErrorCode": 0,
[2025-11-26 19:01:10]     "pilotErrorDiag": "",
[2025-11-26 19:01:10]  *** Listing of results directory ***
[2025-11-26 19:01:10] total 1743692
[2025-11-26 19:01:10] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 19:45 queuedata.json
[2025-11-26 19:01:10] -rwx------ 1 boincer umatlas     36292 Nov 24 19:46 runpilot2-wrapper.sh
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas       100 Nov 25 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:01:10] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 17:32 run_atlas
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas       105 Nov 25 17:32 job.xml
[2025-11-26 19:01:10] -rw-r--r-- 3 boincer umatlas 411209516 Nov 25 17:32 EVNT.47483658._001458.pool.root.1
[2025-11-26 19:01:10] -rw-r--r-- 3 boincer umatlas 411209516 Nov 25 17:32 ATLAS.root_0
[2025-11-26 19:01:10] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:32 start_atlas.sh
[2025-11-26 19:01:10] drwxrwx--x 2 boincer umatlas      4096 Nov 25 17:32 shared
[2025-11-26 19:01:10] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 17:32 input.tar.gz
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas         0 Nov 25 17:32 boinc_lockfile
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 23:31 pandaJob.out
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas        57 Nov 25 23:31 setup.sh.local
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas    991877 Nov 25 23:32 agis_schedconf.cvmfs.json
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas       533 Nov 26 18:52 boinc_task_state.xml
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas      5953 Nov 26 18:58 init_data.xml
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas 935154446 Nov 26 18:59 HITS.47556149._004446.pool.root.1
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas      1078 Nov 26 19:00 memory_monitor_summary.json
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas   1516240 Nov 26 19:00 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas   2322307 Nov 26 19:00 log.47556149._004446.job.log.tgz.1
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas      8644 Nov 26 19:00 heartbeat.json
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas        29 Nov 26 19:00 wrapper_checkpoint.txt
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 19:00 boinc_mmap_file
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas        96 Nov 26 19:00 pilot_heartbeat.json
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas      4820 Nov 26 19:01 pilotlog.txt
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas   9703568 Nov 26 19:01 log.47556149._004446.job.log.1
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas       353 Nov 26 19:01 output.list
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas       620 Nov 26 19:01 runtime_log
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas  12042240 Nov 26 19:01 result.tar.gz
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas      9423 Nov 26 19:01 runtime_log.err
[2025-11-26 19:01:10] -rw------- 1 boincer umatlas       792 Nov 26 19:01 eEYMDmANwh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvFJKDmbeM8Co.diag
[2025-11-26 19:01:10] -rw-r--r-- 1 boincer umatlas     23444 Nov 26 19:01 stderr.txt
[2025-11-26 19:01:11] HITS file was successfully produced:
[2025-11-26 19:01:11] -rw------- 1 boincer umatlas 935154446 Nov 26 18:59 shared/HITS.pool.root.1
[2025-11-26 19:01:11]  *** Contents of shared directory: ***
[2025-11-26 19:01:11] total 1327172
[2025-11-26 19:01:11] -rw-r--r-- 3 boincer umatlas 411209516 Nov 25 17:32 ATLAS.root_0
[2025-11-26 19:01:11] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 17:32 start_atlas.sh
[2025-11-26 19:01:11] -rw-r--r-- 2 boincer umatlas    590106 Nov 25 17:32 input.tar.gz
[2025-11-26 19:01:11] -rw------- 1 boincer umatlas 935154446 Nov 26 18:59 HITS.pool.root.1
[2025-11-26 19:01:11] -rw------- 1 boincer umatlas  12042240 Nov 26 19:01 result.tar.gz
19:01:12 (29181): run_atlas exited; CPU time 548831.522941
19:01:12 (29181): called boinc_finish(0)

</stderr_txt>
]]>

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