Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:37 (23072): wrapper (7.7.26015): starting
16:14:37 (23072): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:14:37] Arguments: --nthreads 8
[2025-11-25 16:14:37] Threads: 8
[2025-11-25 16:14:37] Checking for CVMFS
[2025-11-25 16:14:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:14:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:14:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:14:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:14:38] 2.11.2.0 8539 116801 145860 153297 2 81 14310467 18432001 1885 130560 0 88095444 99.974 4850965 31556 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 16:14:38] CVMFS is ok
[2025-11-25 16:14:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:14:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:14:38] Further information can be found at the LHC@home message board.
[2025-11-25 16:14:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:14:38] Checking for apptainer binary...
[2025-11-25 16:14:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:14:38] Running /usr/bin/apptainer --version
[2025-11-25 16:14:38] apptainer version 1.3.2-1.el7
[2025-11-25 16:14:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:14:39] c-206-1.aglt2.org
[2025-11-25 16:14:39] apptainer works
[2025-11-25 16:14:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:14:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:14:39] Starting ATLAS job with PandaID=6896297544
[2025-11-25 16:14:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:20:04 (23072): BOINC client no longer exists - exiting
23:20:04 (23072): timer handler: client dead, exiting
23:31:52 (29179): wrapper (7.7.26015): starting
23:31:52 (29179): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:31:52] Arguments: --nthreads 8
[2025-11-25 23:31:52] Threads: 8
[2025-11-25 23:31:52] This job has been restarted, cleaning up previous attempt
[2025-11-25 23:31:52] Checking for CVMFS
[2025-11-25 23:31:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:31:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:31:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:31:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:31:53] 2.11.2.0 8539 117238 145984 153309 1 49 14371732 18432001 1 130560 0 88611702 99.975 4867968 31574 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 23:31:53] CVMFS is ok
[2025-11-25 23:31:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:31:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:31:53] Further information can be found at the LHC@home message board.
[2025-11-25 23:31:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:31:53] Checking for apptainer binary...
[2025-11-25 23:31:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:31:53] Running /usr/bin/apptainer --version
[2025-11-25 23:31:53] apptainer version 1.3.2-1.el7
[2025-11-25 23:31:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:31:54] c-206-1.aglt2.org
[2025-11-25 23:31:54] apptainer works
[2025-11-25 23:31:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:31:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:31:54] Starting ATLAS job with PandaID=6896297544
[2025-11-25 23:31:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:09:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:09:29] 2025-11-27 00:08:55,319 | INFO     | monitor loop #5043: job 0:6896297544 is in state 'finished'
[2025-11-26 19:09:29] 2025-11-27 00:08:55,319 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:09:29] 2025-11-27 00:08:55,712 | INFO     | time since job start (70608s) is within the limit (172800.0s)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,548 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 19:09:29] 2025-11-27 00:08:56,556 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-11-26 19:09:29] 2025-11-27 00:08:56,561 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896297544/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,562 | INFO     | extracted standard info from prmon json
[2025-11-26 19:09:29] 2025-11-27 00:08:56,562 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:09:29] 2025-11-27 00:08:56,562 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:09:29] 2025-11-27 00:08:56,593 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:09:29] 2025-11-27 00:08:56,594 | INFO     | sum of square deviations: 480262420787.483
[2025-11-26 19:09:29] 2025-11-27 00:08:56,621 | INFO     | sum of deviations: 2329444500363.336
[2025-11-26 19:09:29] 2025-11-27 00:08:56,621 | INFO     | mean x: 1764166812.6853933
[2025-11-26 19:09:29] 2025-11-27 00:08:56,621 | INFO     | mean y: 3210201.676750216
[2025-11-26 19:09:29] 2025-11-27 00:08:56,621 | INFO     | intersect: -8553629770.926435
[2025-11-26 19:09:29] 2025-11-27 00:08:56,622 | INFO     | chi2: 5.7302433748766095
[2025-11-26 19:09:29] 2025-11-27 00:08:56,623 | INFO     | sum of square deviations: 474063141760.1242
[2025-11-26 19:09:29] 2025-11-27 00:08:56,655 | INFO     | sum of deviations: 2711690775323.222
[2025-11-26 19:09:29] 2025-11-27 00:08:56,655 | INFO     | mean x: 1764166660.188368
[2025-11-26 19:09:29] 2025-11-27 00:08:56,655 | INFO     | mean y: 3219600.03125
[2025-11-26 19:09:29] 2025-11-27 00:08:56,656 | INFO     | intersect: -10087998293.019407
[2025-11-26 19:09:29] 2025-11-27 00:08:56,657 | INFO     | chi2: 3.1143667547911185
[2025-11-26 19:09:29] 2025-11-27 00:08:56,657 | INFO     | current chi2=3.1143667547911185 (change=45.65035809045055 %)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,659 | INFO     | sum of square deviations: 467917445132.745
[2025-11-26 19:09:29] 2025-11-27 00:08:56,705 | INFO     | sum of deviations: 2867354406878.881
[2025-11-26 19:09:29] 2025-11-27 00:08:56,705 | INFO     | mean x: 1764166507.6913688
[2025-11-26 19:09:29] 2025-11-27 00:08:56,705 | INFO     | mean y: 3223456.4629468177
[2025-11-26 19:09:29] 2025-11-27 00:08:56,705 | INFO     | intersect: -10807424154.381979
[2025-11-26 19:09:29] 2025-11-27 00:08:56,707 | INFO     | chi2: 2.4450356086558322
[2025-11-26 19:09:29] 2025-11-27 00:08:56,707 | INFO     | current chi2=2.4450356086558322 (change=21.491725247374678 %)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,707 | INFO     | right removable region: 1146
[2025-11-26 19:09:29] 2025-11-27 00:08:56,709 | INFO     | sum of square deviations: 474062658030.12415
[2025-11-26 19:09:29] 2025-11-27 00:08:56,755 | INFO     | sum of deviations: 2005522730855.0571
[2025-11-26 19:09:29] 2025-11-27 00:08:56,755 | INFO     | mean x: 1764166965.188368
[2025-11-26 19:09:29] 2025-11-27 00:08:56,755 | INFO     | mean y: 3218159.004340278
[2025-11-26 19:09:29] 2025-11-27 00:08:56,755 | INFO     | intersect: -7460092628.668012
[2025-11-26 19:09:29] 2025-11-27 00:08:56,757 | INFO     | chi2: 3.6727508912721016
[2025-11-26 19:09:29] 2025-11-27 00:08:56,757 | INFO     | current chi2=3.6727508912721016 (change=35.905848128986534 %)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,759 | INFO     | sum of square deviations: 467916617851.50635
[2025-11-26 19:09:29] 2025-11-27 00:08:56,803 | INFO     | sum of deviations: 1901195910331.9082
[2025-11-26 19:09:29] 2025-11-27 00:08:56,804 | INFO     | mean x: 1764167117.689625
[2025-11-26 19:09:29] 2025-11-27 00:08:56,804 | INFO     | mean y: 3220747.3199651265
[2025-11-26 19:09:29] 2025-11-27 00:08:56,804 | INFO     | intersect: -7164781373.856992
[2025-11-26 19:09:29] 2025-11-27 00:08:56,806 | INFO     | chi2: 3.573708562172714
[2025-11-26 19:09:29] 2025-11-27 00:08:56,806 | INFO     | current chi2=3.573708562172714 (change=2.6966797376525338 %)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,806 | INFO     | left removable region: 20
[2025-11-26 19:09:29] 2025-11-27 00:08:56,808 | INFO     | sum of square deviations: 442684011672.2305
[2025-11-26 19:09:29] 2025-11-27 00:08:56,851 | INFO     | sum of deviations: 2279230728590.091
[2025-11-26 19:09:29] 2025-11-27 00:08:56,851 | INFO     | mean x: 1764167087.197158
[2025-11-26 19:09:29] 2025-11-27 00:08:56,851 | INFO     | mean y: 3238039.7158081704
[2025-11-26 19:09:29] 2025-11-27 00:08:56,852 | INFO     | intersect: -9079863516.895638
[2025-11-26 19:09:29] 2025-11-27 00:08:56,853 | INFO     | chi2: 0.19940305466895014
[2025-11-26 19:09:29] 2025-11-27 00:08:56,853 | INFO     | current memory leak: 5.15 B/s (using 1126 data points, chi2=0.20)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,855 | INFO     | could have reported an average CPU frequency of 2572 MHz (42 samples)
[2025-11-26 19:09:29] 2025-11-27 00:08:56,855 | INFO     | ..............................
[2025-11-26 19:09:29] 2025-11-27 00:08:56,855 | INFO     | . Timing measurements:
[2025-11-26 19:09:29] 2025-11-27 00:08:56,855 | INFO     | . get job = 0 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,856 | INFO     | . initial setup = 2 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,856 | INFO     | . payload setup = 6 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,856 | INFO     | . stage-in = 0 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,856 | INFO     | . payload execution = 70569 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,856 | INFO     | . stage-out = 3 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,856 | INFO     | . log creation = 0 s
[2025-11-26 19:09:29] 2025-11-27 00:08:56,857 | INFO     | ..............................
[2025-11-26 19:09:29] 2025-11-27 00:08:57,192 | INFO     | 
[2025-11-26 19:09:29] 2025-11-27 00:08:57,192 | INFO     | job summary report
[2025-11-26 19:09:29] 2025-11-27 00:08:57,192 | INFO     | --------------------------------------------------
[2025-11-26 19:09:29] 2025-11-27 00:08:57,192 | INFO     | PanDA job id: 6896297544
[2025-11-26 19:09:29] 2025-11-27 00:08:57,192 | INFO     | task id: 47556149
[2025-11-26 19:09:29] 2025-11-27 00:08:57,193 | INFO     | errors: (none)
[2025-11-26 19:09:29] 2025-11-27 00:08:57,193 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:09:29] 2025-11-27 00:08:57,193 | INFO     | pilot state: finished 
[2025-11-26 19:09:29] 2025-11-27 00:08:57,193 | INFO     | transexitcode: 0
[2025-11-26 19:09:29] 2025-11-27 00:08:57,193 | INFO     | exeerrorcode: 0
[2025-11-26 19:09:29] 2025-11-27 00:08:57,193 | INFO     | exeerrordiag: 
[2025-11-26 19:09:29] 2025-11-27 00:08:57,194 | INFO     | exitcode: 0
[2025-11-26 19:09:29] 2025-11-27 00:08:57,194 | INFO     | exitmsg: OK
[2025-11-26 19:09:29] 2025-11-27 00:08:57,194 | INFO     | cpuconsumptiontime: 542830 s
[2025-11-26 19:09:29] 2025-11-27 00:08:57,194 | INFO     | nevents: 1000
[2025-11-26 19:09:29] 2025-11-27 00:08:57,194 | INFO     | neventsw: 0
[2025-11-26 19:09:29] 2025-11-27 00:08:57,194 | INFO     | pid: 27274
[2025-11-26 19:09:29] 2025-11-27 00:08:57,195 | INFO     | pgrp: 27274
[2025-11-26 19:09:29] 2025-11-27 00:08:57,195 | INFO     | corecount: 8
[2025-11-26 19:09:29] 2025-11-27 00:08:57,195 | INFO     | event service: False
[2025-11-26 19:09:29] 2025-11-27 00:08:57,195 | INFO     | sizes: {0: 2284143, 1: 2284342, 5: 2284604, 11: 2284660, 70579: 2341402, 70580: 2341401, 70584: 2350579, 70588: 2350635, 70593: 2350881}
[2025-11-26 19:09:29] 2025-11-27 00:08:57,195 | INFO     | --------------------------------------------------
[2025-11-26 19:09:29] 2025-11-27 00:08:57,195 | INFO     | 
[2025-11-26 19:09:29] 2025-11-27 00:08:57,196 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 19:09:29] 2025-11-27 00:08:57,216 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,217 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,217 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,218 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,218 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,218 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,218 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,218 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,219 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,219 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,219 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,220 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:09:29] 2025-11-27 00:08:57,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,220 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:09:29] 2025-11-27 00:08:57,220 | INFO     | job 6896297544 has completed (purged errors)
[2025-11-26 19:09:29] 2025-11-27 00:08:57,220 | INFO     | overall cleanup function is called
[2025-11-26 19:09:29] 2025-11-27 00:08:58,236 | INFO     | --- collectZombieJob: --- 10, [27274]
[2025-11-26 19:09:29] 2025-11-27 00:08:58,236 | INFO     | zombie collector waiting for pid 27274
[2025-11-26 19:09:29] 2025-11-27 00:08:58,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:09:29] 2025-11-27 00:08:58,237 | INFO     | collected zombie processes
[2025-11-26 19:09:29] 2025-11-27 00:08:58,237 | INFO     | will attempt to kill all subprocesses of pid=27274
[2025-11-26 19:09:29] 2025-11-27 00:08:58,367 | INFO     | process IDs to be killed: [27274] (in reverse order)
[2025-11-26 19:09:29] 2025-11-27 00:08:58,426 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:09:29] 2025-11-27 00:08:58,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:09:29] 2025-11-27 00:08:58,432 | INFO     | did not find any defunct processes belonging to 27274
[2025-11-26 19:09:29] 2025-11-27 00:08:58,438 | INFO     | did not find any defunct processes belonging to 27274
[2025-11-26 19:09:29] 2025-11-27 00:08:58,440 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:09:29] 2025-11-27 00:08:58,440 | INFO     | ready for new job
[2025-11-26 19:09:29] 2025-11-27 00:08:58,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:09:29] 2025-11-27 00:08:58,445 | INFO     | ***************************************
[2025-11-26 19:09:29] 2025-11-27 00:08:58,445 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:09:29] 2025-11-27 00:08:58,445 | INFO     | ***************************************
[2025-11-26 19:09:29] 2025-11-27 00:08:58,446 | INFO     | 
[2025-11-26 19:09:29] 2025-11-27 00:08:58,447 | INFO     | architecture information:
[2025-11-26 19:09:29] 2025-11-27 00:08:58,447 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:09:29] 2025-11-27 00:08:58,461 | INFO     | cat /etc/os-release:
[2025-11-26 19:09:29] NAME="CentOS Linux"
[2025-11-26 19:09:29] VERSION="7 (Core)"
[2025-11-26 19:09:29] ID="centos"
[2025-11-26 19:09:29] ID_LIKE="rhel fedora"
[2025-11-26 19:09:29] VERSION_ID="7"
[2025-11-26 19:09:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:09:29] ANSI_COLOR="0;31"
[2025-11-26 19:09:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:09:29] HOME_URL="https://www.centos.org/"
[2025-11-26 19:09:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:09:29] 
[2025-11-26 19:09:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:09:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:09:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:09:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:09:29] 
[2025-11-26 19:09:29] 2025-11-27 00:08:58,461 | INFO     | ***************************************
[2025-11-26 19:09:29] 2025-11-27 00:08:58,964 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 19:09:29] 2025-11-27 00:08:58,987 | INFO     | sufficient remaining disk space (26297237504 B)
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | INFO     | update_server=False
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:09:29] 2025-11-27 00:08:58,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:09:29] 2025-11-27 00:08:58,989 | INFO     | aborting loop
[2025-11-26 19:09:29] 2025-11-27 00:08:59,526 | INFO     | all job control threads have been joined
[2025-11-26 19:09:29] 2025-11-27 00:08:59,995 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:08:59,996 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:08:59,996 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,018 | INFO     | all data control threads have been joined
[2025-11-26 19:09:29] 2025-11-27 00:09:00,282 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,325 | INFO     | all payload control threads have been joined
[2025-11-26 19:09:29] 2025-11-27 00:09:00,532 | INFO     | [job] control thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,552 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,688 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,716 | INFO     | [job] validate thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,717 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,824 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,891 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:00,995 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:01,026 | INFO     | [data] control thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:01,331 | INFO     | [payload] control thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:02,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:09:29] 2025-11-27 00:09:03,706 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:09:29] 2025-11-27 00:09:06,023 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:09:29] 2025-11-27 00:09:06,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140062624753472)>', '<ExcThread(monitor, started 140061794346752)>']
[2025-11-26 19:09:29] 2025-11-27 00:09:11,827 | INFO     | all workflow threads have been joined
[2025-11-26 19:09:29] 2025-11-27 00:09:11,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:09:29] 2025-11-27 00:09:11,828 | INFO     | traces error code: 0
[2025-11-26 19:09:29] 2025-11-27 00:09:11,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:09:29] 2025-11-27 00:09:28,952 | INFO     | PID=8092 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 19:09:29] 2025-11-27 00:09:28,952 | INFO     | .. there are 3 such processes running
[2025-11-26 19:09:29] 2025-11-27 00:09:28,952 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:09:29] 2025-11-27 00:09:28,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:09:29] 2025-11-27 00:09:28,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:09:29] 2025-11-27 00:09:28,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:09:29] 2025-11-27 00:09:28,953 | INFO     | [monitor] control thread has ended
[2025-11-26 19:09:29] 2025-11-27 00:09:29,070 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:09:29] 2025-11-27 00:09:29,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:09:29] 2025-11-27 00:09:29,074 [wrapper] pilotpid: 8092
[2025-11-26 19:09:29] 2025-11-27 00:09:29,076 [wrapper] Pilot exit status: 0
[2025-11-26 19:09:29] 2025-11-27 00:09:29,083 [wrapper] pandaids: 6896297544 6896297544
[2025-11-26 19:09:29] 2025-11-27 00:09:29,122 [wrapper] cleanup supervisor_pilot  4817 8093
[2025-11-26 19:09:29] 2025-11-27 00:09:29,124 [wrapper] Test setup, not cleaning
[2025-11-26 19:09:29] 2025-11-27 00:09:29,126 [wrapper] apfmon messages muted
[2025-11-26 19:09:29] 2025-11-27 00:09:29,128 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:09:29] 2025-11-27 00:09:29,130 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:09:29]  *** Error codes and diagnostics ***
[2025-11-26 19:09:29]     "exeErrorCode": 0,
[2025-11-26 19:09:29]     "exeErrorDiag": "",
[2025-11-26 19:09:29]     "pilotErrorCode": 0,
[2025-11-26 19:09:29]     "pilotErrorDiag": "",
[2025-11-26 19:09:29]  *** Listing of results directory ***
[2025-11-26 19:09:29] total 1741828
[2025-11-26 19:09:29] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 19:56 queuedata.json
[2025-11-26 19:09:29] -rwx------ 1 boincer umatlas     36292 Nov 24 19:57 runpilot2-wrapper.sh
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas       100 Nov 25 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:09:29] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 16:14 run_atlas
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas       105 Nov 25 16:14 job.xml
[2025-11-26 19:09:29] -rw-r--r-- 3 boincer umatlas 412613286 Nov 25 16:14 EVNT.47483658._001464.pool.root.1
[2025-11-26 19:09:29] -rw-r--r-- 3 boincer umatlas 412613286 Nov 25 16:14 ATLAS.root_0
[2025-11-26 19:09:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 16:14 start_atlas.sh
[2025-11-26 19:09:29] drwxrwx--x 2 boincer umatlas      4096 Nov 25 16:14 shared
[2025-11-26 19:09:29] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 16:14 input.tar.gz
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas         0 Nov 25 16:14 boinc_lockfile
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 23:31 pandaJob.out
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas        57 Nov 25 23:31 setup.sh.local
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas    991877 Nov 25 23:32 agis_schedconf.cvmfs.json
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas       533 Nov 26 18:59 boinc_task_state.xml
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas      5953 Nov 26 19:03 init_data.xml
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas 930284102 Nov 26 19:08 HITS.47556149._004504.pool.root.1
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas      1070 Nov 26 19:08 memory_monitor_summary.json
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas        96 Nov 26 19:08 pilot_heartbeat.json
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas   1516240 Nov 26 19:08 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas   2323119 Nov 26 19:08 log.47556149._004504.job.log.tgz.1
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas      8655 Nov 26 19:08 heartbeat.json
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas        29 Nov 26 19:09 wrapper_checkpoint.txt
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 19:09 boinc_mmap_file
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas       819 Nov 26 19:09 pilotlog.txt
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas   9776930 Nov 26 19:09 log.47556149._004504.job.log.1
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas       353 Nov 26 19:09 output.list
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas       620 Nov 26 19:09 runtime_log
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas  12124160 Nov 26 19:09 result.tar.gz
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas      9423 Nov 26 19:09 runtime_log.err
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas       792 Nov 26 19:09 7PiLDmmXwh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgGJKDm8Tk56n.diag
[2025-11-26 19:09:29] -rw-r--r-- 1 boincer umatlas     23582 Nov 26 19:09 stderr.txt
[2025-11-26 19:09:29] HITS file was successfully produced:
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas 930284102 Nov 26 19:08 shared/HITS.pool.root.1
[2025-11-26 19:09:29]  *** Contents of shared directory: ***
[2025-11-26 19:09:29] total 1323868
[2025-11-26 19:09:29] -rw-r--r-- 3 boincer umatlas 412613286 Nov 25 16:14 ATLAS.root_0
[2025-11-26 19:09:29] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 16:14 start_atlas.sh
[2025-11-26 19:09:29] -rw-r--r-- 2 boincer umatlas    590104 Nov 25 16:14 input.tar.gz
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas 930284102 Nov 26 19:08 HITS.pool.root.1
[2025-11-26 19:09:29] -rw------- 1 boincer umatlas  12124160 Nov 26 19:09 result.tar.gz
19:09:30 (29179): run_atlas exited; CPU time 541828.525543
19:09:30 (29179): called boinc_finish(0)

</stderr_txt>
]]>

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