Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:42:44 (9676): wrapper (7.7.26015): starting
04:42:44 (9676): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 04:42:44] Arguments: --nthreads 8
[2025-11-28 04:42:44] Threads: 8
[2025-11-28 04:42:44] Checking for CVMFS
[2025-11-28 04:42:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 04:42:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 04:42:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 04:42:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 04:42:47] 2.11.2.0 942 174530 127500 153395 2 85 16337970 25165825 1344 130560 12 60561560 99.901 31522520 2276 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 04:42:47] CVMFS is ok
[2025-11-28 04:42:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 04:42:47] Checking for apptainer binary...
[2025-11-28 04:42:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 04:42:47] Running /usr/bin/apptainer --version
[2025-11-28 04:42:48] apptainer version 1.3.2-1.el7
[2025-11-28 04:42:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 04:43:04] cg-vwn460.simple-grid.lan
[2025-11-28 04:43:04] apptainer works
[2025-11-28 04:43:04] Set ATHENA_PROC_NUMBER=8
[2025-11-28 04:43:04] Set ATHENA_CORE_NUMBER=8
[2025-11-28 04:43:04] Starting ATLAS job with PandaID=6896297559
[2025-11-28 04:43:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 02:34:56]  *** The last 200 lines of the pilot log: ***
[2025-11-29 02:34:56] 2025-11-29 01:34:08,549 | INFO     | time since job start (78420s) is within the limit (172800.0s)
[2025-11-29 02:34:56] 2025-11-29 01:34:08,693 | INFO     | monitor loop #5339: job 0:6896297559 is in state 'finished'
[2025-11-29 02:34:56] 2025-11-29 01:34:08,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 02:34:56] 2025-11-29 01:34:10,557 | INFO     | time since job start (78422s) is within the limit (172800.0s)
[2025-11-29 02:34:56] 2025-11-29 01:34:11,198 | INFO     | monitor loop #5340: job 0:6896297559 is in state 'finished'
[2025-11-29 02:34:56] 2025-11-29 01:34:11,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 02:34:56] 2025-11-29 01:34:12,568 | INFO     | time since job start (78424s) is within the limit (172800.0s)
[2025-11-29 02:34:56] 2025-11-29 01:34:13,703 | INFO     | monitor loop #5341: job 0:6896297559 is in state 'finished'
[2025-11-29 02:34:56] 2025-11-29 01:34:13,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 02:34:56] 2025-11-29 01:34:14,575 | INFO     | time since job start (78426s) is within the limit (172800.0s)
[2025-11-29 02:34:56] 2025-11-29 01:34:15,768 | INFO     | PID=13486 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 02:34:56] 2025-11-29 01:34:15,768 | INFO     | .. there are 9 such processes running
[2025-11-29 02:34:56] 2025-11-29 01:34:16,211 | INFO     | monitor loop #5342: job 0:6896297559 is in state 'finished'
[2025-11-29 02:34:56] 2025-11-29 01:34:16,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 02:34:56] 2025-11-29 01:34:16,773 | INFO     | time since job start (78428s) is within the limit (172800.0s)
[2025-11-29 02:34:56] 2025-11-29 01:34:17,601 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 02:34:56] 2025-11-29 01:34:17,602 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2025-11-29 02:34:56] 2025-11-29 01:34:17,604 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6896297559/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 02:34:56] 2025-11-29 01:34:17,604 | INFO     | extracted standard info from prmon json
[2025-11-29 02:34:56] 2025-11-29 01:34:17,604 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 02:34:56] 2025-11-29 01:34:17,605 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 02:34:56] 2025-11-29 01:34:17,626 | INFO     | fitting pss+swap vs Time
[2025-11-29 02:34:56] 2025-11-29 01:34:17,628 | INFO     | sum of square deviations: 644213700646.5428
[2025-11-29 02:34:56] 2025-11-29 01:34:17,671 | INFO     | sum of deviations: 2913608032782.1777
[2025-11-29 02:34:56] 2025-11-29 01:34:17,671 | INFO     | mean x: 1764341027.5438871
[2025-11-29 02:34:56] 2025-11-29 01:34:17,671 | INFO     | mean y: 2844065.8181818184
[2025-11-29 02:34:56] 2025-11-29 01:34:17,671 | INFO     | intersect: -7976803348.168585
[2025-11-29 02:34:56] 2025-11-29 01:34:17,673 | INFO     | chi2: 19.847944479971385
[2025-11-29 02:34:56] 2025-11-29 01:34:17,675 | INFO     | sum of square deviations: 636670691046.0717
[2025-11-29 02:34:56] 2025-11-29 01:34:17,746 | INFO     | sum of deviations: 3346475837704.1064
[2025-11-29 02:34:56] 2025-11-29 01:34:17,746 | INFO     | mean x: 1764340875.0479937
[2025-11-29 02:34:56] 2025-11-29 01:34:17,746 | INFO     | mean y: 2852816.785208497
[2025-11-29 02:34:56] 2025-11-29 01:34:17,747 | INFO     | intersect: -9270896062.907722
[2025-11-29 02:34:56] 2025-11-29 01:34:17,749 | INFO     | chi2: 16.5056586550256
[2025-11-29 02:34:56] 2025-11-29 01:34:17,749 | INFO     | current chi2=16.5056586550256 (change=16.839455734665602 %)
[2025-11-29 02:34:56] 2025-11-29 01:34:17,749 | INFO     | right removable region: 1270
[2025-11-29 02:34:56] 2025-11-29 01:34:17,751 | INFO     | sum of square deviations: 636669878526.0712
[2025-11-29 02:34:56] 2025-11-29 01:34:17,803 | INFO     | sum of deviations: 2385216780452.6553
[2025-11-29 02:34:56] 2025-11-29 01:34:17,803 | INFO     | mean x: 1764341180.0479937
[2025-11-29 02:34:56] 2025-11-29 01:34:17,803 | INFO     | mean y: 2854746.8418568056
[2025-11-29 02:34:56] 2025-11-29 01:34:17,804 | INFO     | intersect: -6607064036.871712
[2025-11-29 02:34:56] 2025-11-29 01:34:17,805 | INFO     | chi2: 15.266537931279025
[2025-11-29 02:34:56] 2025-11-29 01:34:17,805 | INFO     | current chi2=15.266537931279025 (change=23.08252400300429 %)
[2025-11-29 02:34:56] 2025-11-29 01:34:17,805 | INFO     | left removable region: 10
[2025-11-29 02:34:56] 2025-11-29 01:34:17,807 | INFO     | sum of square deviations: 620282210640.8859
[2025-11-29 02:34:56] 2025-11-29 01:34:17,859 | INFO     | sum of deviations: 2480559090957.8843
[2025-11-29 02:34:56] 2025-11-29 01:34:17,869 | INFO     | mean x: 1764341149.557143
[2025-11-29 02:34:56] 2025-11-29 01:34:17,869 | INFO     | mean y: 2874819.834920635
[2025-11-29 02:34:56] 2025-11-29 01:34:17,869 | INFO     | intersect: -7052869167.34654
[2025-11-29 02:34:56] 2025-11-29 01:34:17,871 | INFO     | chi2: 7.8175778322277
[2025-11-29 02:34:56] 2025-11-29 01:34:17,871 | INFO     | current memory leak: 4.00 B/s (using 1260 data points, chi2=7.82)
[2025-11-29 02:34:56] 2025-11-29 01:34:17,872 | INFO     | could have reported an average CPU frequency of 2250 MHz (44 samples)
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | ..............................
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . Timing measurements:
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . get job = 0 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . initial setup = 8 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . payload setup = 159 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . stage-in = 0 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . payload execution = 77975 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,873 | INFO     | . stage-out = 5 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,874 | INFO     | . log creation = 2 s
[2025-11-29 02:34:56] 2025-11-29 01:34:17,874 | INFO     | ..............................
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | 
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | job summary report
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | --------------------------------------------------
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | PanDA job id: 6896297559
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | task id: 47556149
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | errors: (none)
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | pilot state: finished 
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | transexitcode: 0
[2025-11-29 02:34:56] 2025-11-29 01:34:18,503 | INFO     | exeerrorcode: 0
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | exeerrordiag: 
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | exitcode: 0
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | exitmsg: OK
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | cpuconsumptiontime: 292837 s
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | nevents: 1000
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | neventsw: 0
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | pid: 20104
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | pgrp: 20104
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | corecount: 8
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | event service: False
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | sizes: {0: 2284087, 1: 2284171, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 44: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 87: 2284722, 89: 2285292, 98
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | --------------------------------------------------
[2025-11-29 02:34:56] 2025-11-29 01:34:18,504 | INFO     | 
[2025-11-29 02:34:56] 2025-11-29 01:34:18,505 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-29 02:34:56] 2025-11-29 01:34:18,788 | INFO     | time since job start (78430s) is within the limit (172800.0s)
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 02:34:56] 2025-11-29 01:34:19,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,025 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 02:34:56] 2025-11-29 01:34:19,025 | INFO     | job 6896297559 has completed (purged errors)
[2025-11-29 02:34:56] 2025-11-29 01:34:19,025 | INFO     | overall cleanup function is called
[2025-11-29 02:34:56] 2025-11-29 01:34:20,039 | INFO     | --- collectZombieJob: --- 10, [20104]
[2025-11-29 02:34:56] 2025-11-29 01:34:20,039 | INFO     | zombie collector waiting for pid 20104
[2025-11-29 02:34:56] 2025-11-29 01:34:20,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 02:34:56] 2025-11-29 01:34:20,039 | INFO     | collected zombie processes
[2025-11-29 02:34:56] 2025-11-29 01:34:20,039 | INFO     | will attempt to kill all subprocesses of pid=20104
[2025-11-29 02:34:56] 2025-11-29 01:34:20,143 | INFO     | process IDs to be killed: [20104] (in reverse order)
[2025-11-29 02:34:56] 2025-11-29 01:34:20,745 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 02:34:56] 2025-11-29 01:34:20,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 02:34:56] 2025-11-29 01:34:20,748 | INFO     | did not find any defunct processes belonging to 20104
[2025-11-29 02:34:56] 2025-11-29 01:34:20,751 | INFO     | did not find any defunct processes belonging to 20104
[2025-11-29 02:34:56] 2025-11-29 01:34:20,789 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 02:34:56] 2025-11-29 01:34:20,789 | INFO     | ready for new job
[2025-11-29 02:34:56] 2025-11-29 01:34:20,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 02:34:56] 2025-11-29 01:34:20,794 | INFO     | ***************************************
[2025-11-29 02:34:56] 2025-11-29 01:34:20,794 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 02:34:56] 2025-11-29 01:34:20,795 | INFO     | ***************************************
[2025-11-29 02:34:56] 2025-11-29 01:34:20,795 | INFO     | 
[2025-11-29 02:34:56] 2025-11-29 01:34:20,795 | INFO     | pilot is running in a VM
[2025-11-29 02:34:56] 2025-11-29 01:34:20,795 | INFO     | architecture information:
[2025-11-29 02:34:56] 2025-11-29 01:34:20,813 | INFO     | executing command: cat /etc/os-release
[2025-11-29 02:34:56] 2025-11-29 01:34:21,064 | INFO     | cat /etc/os-release:
[2025-11-29 02:34:56] NAME="CentOS Linux"
[2025-11-29 02:34:56] VERSION="7 (Core)"
[2025-11-29 02:34:56] ID="centos"
[2025-11-29 02:34:56] ID_LIKE="rhel fedora"
[2025-11-29 02:34:56] VERSION_ID="7"
[2025-11-29 02:34:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 02:34:56] ANSI_COLOR="0;31"
[2025-11-29 02:34:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 02:34:56] HOME_URL="https://www.centos.org/"
[2025-11-29 02:34:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 02:34:56] 
[2025-11-29 02:34:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 02:34:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 02:34:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 02:34:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 02:34:56] 
[2025-11-29 02:34:56] 2025-11-29 01:34:21,064 | INFO     | ***************************************
[2025-11-29 02:34:56] 2025-11-29 01:34:21,568 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-29 02:34:56] 2025-11-29 01:34:21,725 | INFO     | sufficient remaining disk space (489290727424 B)
[2025-11-29 02:34:56] 2025-11-29 01:34:21,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 02:34:56] 2025-11-29 01:34:21,726 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 02:34:56] 2025-11-29 01:34:21,726 | INFO     | update_server=False
[2025-11-29 02:34:56] 2025-11-29 01:34:21,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 02:34:56] 2025-11-29 01:34:21,727 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 02:34:56] 2025-11-29 01:34:21,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 02:34:56] 2025-11-29 01:34:22,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:34:56] 2025-11-29 01:34:22,227 | INFO     | aborting loop
[2025-11-29 02:34:56] 2025-11-29 01:34:22,274 | INFO     | all job control threads have been joined
[2025-11-29 02:34:56] 2025-11-29 01:34:22,310 | INFO     | all payload control threads have been joined
[2025-11-29 02:34:56] 2025-11-29 01:34:22,470 | INFO     | all data control threads have been joined
[2025-11-29 02:34:56] 2025-11-29 01:34:22,732 | INFO     | [job] retrieve thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:22,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:22,847 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:22,896 | INFO     | [payload] validate_post thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 02:34:56] 2025-11-29 01:34:23,082 | INFO     | [payload] failed_post thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,233 | INFO     | [job] job monitor thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,244 | INFO     | [job] validate thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,262 | INFO     | [data] copytool_in thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,281 | INFO     | [job] control thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,317 | INFO     | [payload] control thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,475 | INFO     | [data] control thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,526 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,666 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:23,734 | INFO     | [data] copytool_out thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:24,047 | INFO     | [job] queue monitor thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:24,819 | INFO     | [monitor] cgroup control has ended
[2025-11-29 02:34:56] 2025-11-29 01:34:25,965 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 02:34:56] 2025-11-29 01:34:27,940 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678521853760)>', '<ExcThread(monitor, started 139677931644672)>']
[2025-11-29 02:34:56] 2025-11-29 01:34:32,966 | INFO     | all workflow threads have been joined
[2025-11-29 02:34:56] 2025-11-29 01:34:32,966 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 02:34:56] 2025-11-29 01:34:32,966 | INFO     | traces error code: 0
[2025-11-29 02:34:56] 2025-11-29 01:34:32,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 02:34:56] 2025-11-29 01:34:51,952 | INFO     | PID=13486 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 02:34:56] 2025-11-29 01:34:51,952 | INFO     | .. there are 9 such processes running
[2025-11-29 02:34:56] 2025-11-29 01:34:51,952 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 02:34:56] 2025-11-29 01:34:51,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 02:34:56] 2025-11-29 01:34:51,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 02:34:56] 2025-11-29 01:34:51,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 02:34:56] 2025-11-29 01:34:51,953 | INFO     | [monitor] control thread has ended
[2025-11-29 02:34:56] 2025-11-29 01:34:52,321 [wrapper] ==== pilot stdout END ====
[2025-11-29 02:34:56] 2025-11-29 01:34:52,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 02:34:56] 2025-11-29 01:34:52,534 [wrapper] pilotpid: 13486
[2025-11-29 02:34:56] 2025-11-29 01:34:52,622 [wrapper] Pilot exit status: 0
[2025-11-29 02:34:56] 2025-11-29 01:34:52,958 [wrapper] pandaids: 6896297559
[2025-11-29 02:34:56] 2025-11-29 01:34:54,070 [wrapper] cleanup supervisor_pilot  7978 13487
[2025-11-29 02:34:56] 2025-11-29 01:34:54,125 [wrapper] Test setup, not cleaning
[2025-11-29 02:34:56] 2025-11-29 01:34:54,199 [wrapper] apfmon messages muted
[2025-11-29 02:34:56] 2025-11-29 01:34:54,266 [wrapper] ==== wrapper stdout END ====
[2025-11-29 02:34:56] 2025-11-29 01:34:54,324 [wrapper] ==== wrapper stderr END ====
[2025-11-29 02:34:56]  *** Error codes and diagnostics ***
[2025-11-29 02:34:56]     "exeErrorCode": 0,
[2025-11-29 02:34:56]     "exeErrorDiag": "",
[2025-11-29 02:34:56]     "pilotErrorCode": 0,
[2025-11-29 02:34:56]     "pilotErrorDiag": "",
[2025-11-29 02:34:56]  *** Listing of results directory ***
[2025-11-29 02:34:56] total 1328480
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc    576529 Nov 25 01:10 pilot3.tar.gz
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc      5112 Nov 25 01:56 queuedata.json
[2025-11-29 02:34:56] -rwx------. 1 boinc boinc     36292 Nov 25 02:00 runpilot2-wrapper.sh
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc       100 Nov 28 04:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 02:34:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 04:42 run_atlas
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc       105 Nov 28 04:42 job.xml
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc      6392 Nov 28 04:42 init_data.xml
[2025-11-29 02:34:56] -rw-r--r--. 2 boinc boinc 411420342 Nov 28 04:42 EVNT.47483658._001465.pool.root.1
[2025-11-29 02:34:56] -rw-r--r--. 2 boinc boinc     15847 Nov 28 04:42 start_atlas.sh
[2025-11-29 02:34:56] drwxrwx--x. 2 boinc boinc        68 Nov 28 04:42 shared
[2025-11-29 02:34:56] -rw-r--r--. 2 boinc boinc    590103 Nov 28 04:42 input.tar.gz
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc         0 Nov 28 04:42 boinc_lockfile
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc      2785 Nov 28 04:43 pandaJob.out
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc    991850 Nov 28 04:47 agis_schedconf.cvmfs.json
[2025-11-29 02:34:56] drwx------. 5 boinc boinc      4096 Nov 28 04:47 pilot3
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc       533 Nov 29 02:14 boinc_task_state.xml
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc 919214696 Nov 29 02:31 HITS.47556149._004519.pool.root.1
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc      1031 Nov 29 02:32 memory_monitor_summary.json
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc   1516240 Nov 29 02:32 agis_ddmendpoints.agis.ALL.json
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc   2394139 Nov 29 02:32 log.47556149._004519.job.log.tgz.1
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc        95 Nov 29 02:34 pilot_heartbeat.json
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc      8625 Nov 29 02:34 heartbeat.json
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc      8192 Nov 29 02:34 boinc_mmap_file
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc        29 Nov 29 02:34 wrapper_checkpoint.txt
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc       820 Nov 29 02:34 pilotlog.txt
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc  10515382 Nov 29 02:34 log.47556149._004519.job.log.1
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc       353 Nov 29 02:34 output.list
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc       620 Nov 29 02:34 runtime_log
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc  12933120 Nov 29 02:34 result.tar.gz
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc       662 Nov 29 02:34 uvSMDmCbwh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmh1LKDm4G1Vfn.diag
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc      8817 Nov 29 02:34 runtime_log.err
[2025-11-29 02:34:56] -rw-r--r--. 1 boinc boinc     21492 Nov 29 02:34 stderr.txt
[2025-11-29 02:34:56] HITS file was successfully produced:
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc 919214696 Nov 29 02:31 shared/HITS.pool.root.1
[2025-11-29 02:34:56]  *** Contents of shared directory: ***
[2025-11-29 02:34:56] total 1312680
[2025-11-29 02:34:56] -rw-r--r--. 2 boinc boinc 411420342 Nov 28 04:42 ATLAS.root_0
[2025-11-29 02:34:56] -rw-r--r--. 2 boinc boinc     15847 Nov 28 04:42 start_atlas.sh
[2025-11-29 02:34:56] -rw-r--r--. 2 boinc boinc    590103 Nov 28 04:42 input.tar.gz
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc 919214696 Nov 29 02:31 HITS.pool.root.1
[2025-11-29 02:34:56] -rw-------. 1 boinc boinc  12933120 Nov 29 02:34 result.tar.gz
02:34:58 (9676): run_atlas exited; CPU time 293278.815037
02:34:58 (9676): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN