Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:14 (685): wrapper (7.7.26015): starting
00:04:14 (685): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:14] Arguments: --nthreads 9
[2025-11-26 00:04:14] Threads: 9
[2025-11-26 00:04:14] Checking for CVMFS
[2025-11-26 00:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:16] 2.13.2.0 7646 32466 166924 153309 0 175 24262277 39288832 6427 16776704 0 25262144 99.583 27895463 39388 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:04:16] CVMFS is ok
[2025-11-26 00:04:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:16] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:16] Checking for apptainer binary...
[2025-11-26 00:04:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:16] Running /usr/bin/apptainer --version
[2025-11-26 00:04:16] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:17] c-210-2.aglt2.org
[2025-11-26 00:04:17] apptainer works
[2025-11-26 00:04:17] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:17] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:17] Starting ATLAS job with PandaID=6896297182
[2025-11-26 00:04:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:36:30]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:36:30] 2025-11-28 01:35:41,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:36:30] 2025-11-28 01:35:41,390 | INFO     | time since job start (160204s) is within the limit (172800.0s)
[2025-11-27 20:36:30] 2025-11-28 01:35:43,268 | INFO     | PID=9845 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 20:36:30] 2025-11-28 01:35:43,268 | INFO     | .. there are 8 such processes running
[2025-11-27 20:36:30] 2025-11-28 01:35:43,628 | INFO     | monitor loop #10461: job 0:6896297182 is in state 'finished'
[2025-11-27 20:36:30] 2025-11-28 01:35:43,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:36:30] 2025-11-28 01:35:44,269 | INFO     | time since job start (160207s) is within the limit (172800.0s)
[2025-11-27 20:36:30] 2025-11-28 01:35:46,134 | INFO     | monitor loop #10462: job 0:6896297182 is in state 'finished'
[2025-11-27 20:36:30] 2025-11-28 01:35:46,136 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:36:30] 2025-11-28 01:35:46,276 | INFO     | time since job start (160209s) is within the limit (172800.0s)
[2025-11-27 20:36:30] 2025-11-28 01:35:48,283 | INFO     | time since job start (160211s) is within the limit (172800.0s)
[2025-11-27 20:36:30] 2025-11-28 01:35:48,642 | INFO     | monitor loop #10463: job 0:6896297182 is in state 'finished'
[2025-11-27 20:36:30] 2025-11-28 01:35:48,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:36:30] 2025-11-28 01:35:50,290 | INFO     | time since job start (160213s) is within the limit (172800.0s)
[2025-11-27 20:36:30] 2025-11-28 01:35:50,802 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 20:36:30] 2025-11-28 01:35:50,818 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.7630000000004
[2025-11-27 20:36:30] 2025-11-28 01:35:50,834 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896297182/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 20:36:30] 2025-11-28 01:35:50,835 | INFO     | extracted standard info from prmon json
[2025-11-27 20:36:30] 2025-11-28 01:35:50,836 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 20:36:30] 2025-11-28 01:35:50,836 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 20:36:30] 2025-11-28 01:35:50,952 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:36:30] 2025-11-28 01:35:50,963 | INFO     | sum of square deviations: 5602481332102.194
[2025-11-27 20:36:30] 2025-11-28 01:35:51,153 | INFO     | monitor loop #10464: job 0:6896297182 is in state 'finished'
[2025-11-27 20:36:30] 2025-11-28 01:35:51,166 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 20:36:30] 2025-11-28 01:35:51,357 | INFO     | sum of deviations: 17511146130068.15
[2025-11-27 20:36:30] 2025-11-28 01:35:51,358 | INFO     | mean x: 1764213697.6631098
[2025-11-27 20:36:30] 2025-11-28 01:35:51,358 | INFO     | mean y: 3074345.805640244
[2025-11-27 20:36:30] 2025-11-28 01:35:51,358 | INFO     | intersect: -5511161585.232186
[2025-11-27 20:36:30] 2025-11-28 01:35:51,362 | INFO     | chi2: 19.091356477178653
[2025-11-27 20:36:30] 2025-11-28 01:35:51,366 | INFO     | sum of square deviations: 5570519245622.074
[2025-11-27 20:36:30] 2025-11-28 01:35:51,546 | INFO     | sum of deviations: 18432656825795.21
[2025-11-27 20:36:30] 2025-11-28 01:35:51,547 | INFO     | mean x: 1764213545.1691484
[2025-11-27 20:36:30] 2025-11-28 01:35:51,547 | INFO     | mean y: 3078742.040091638
[2025-11-27 20:36:30] 2025-11-28 01:35:51,547 | INFO     | intersect: -5834643274.822086
[2025-11-27 20:36:30] 2025-11-28 01:35:51,550 | INFO     | chi2: 16.0478102962202
[2025-11-27 20:36:30] 2025-11-28 01:35:51,551 | INFO     | current chi2=16.0478102962202 (change=15.94201116403979 %)
[2025-11-27 20:36:30] 2025-11-28 01:35:51,551 | INFO     | right removable region: 2618
[2025-11-27 20:36:30] 2025-11-28 01:35:51,555 | INFO     | sum of square deviations: 5570514182622.076
[2025-11-27 20:36:30] 2025-11-28 01:35:51,768 | INFO     | sum of deviations: 16358546004473.531
[2025-11-27 20:36:30] 2025-11-28 01:35:51,769 | INFO     | mean x: 1764213850.1691484
[2025-11-27 20:36:30] 2025-11-28 01:35:51,769 | INFO     | mean y: 3079844.2290950743
[2025-11-27 20:36:30] 2025-11-28 01:35:51,769 | INFO     | intersect: -5177765672.645042
[2025-11-27 20:36:30] 2025-11-28 01:35:51,773 | INFO     | chi2: 14.721431029868588
[2025-11-27 20:36:30] 2025-11-28 01:35:51,773 | INFO     | current chi2=14.721431029868588 (change=22.88954927081147 %)
[2025-11-27 20:36:30] 2025-11-28 01:35:51,773 | INFO     | left removable region: 10
[2025-11-27 20:36:30] 2025-11-28 01:35:51,777 | INFO     | sum of square deviations: 5500621154471.49
[2025-11-27 20:36:30] 2025-11-28 01:35:51,932 | INFO     | sum of deviations: 16441478769370.082
[2025-11-27 20:36:30] 2025-11-28 01:35:51,932 | INFO     | mean x: 1764213819.682132
[2025-11-27 20:36:30] 2025-11-28 01:35:51,932 | INFO     | mean y: 3090249.435582822
[2025-11-27 20:36:30] 2025-11-28 01:35:51,933 | INFO     | intersect: -5270184031.11611
[2025-11-27 20:36:30] 2025-11-28 01:35:51,936 | INFO     | chi2: 7.449899775730865
[2025-11-27 20:36:30] 2025-11-28 01:35:51,937 | INFO     | current memory leak: 2.99 B/s (using 2608 data points, chi2=7.45)
[2025-11-27 20:36:30] 2025-11-28 01:35:51,939 | INFO     | could have reported an average CPU frequency of 2599 MHz (91 samples)
[2025-11-27 20:36:30] 2025-11-28 01:35:51,939 | INFO     | ..............................
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . Timing measurements:
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . get job = 0 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . initial setup = 6 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . payload setup = 49 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . stage-in = 0 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . payload execution = 160047 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . stage-out = 6 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | . log creation = 1 s
[2025-11-27 20:36:30] 2025-11-28 01:35:51,940 | INFO     | ..............................
[2025-11-27 20:36:30] 2025-11-28 01:35:52,161 | INFO     | 
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | job summary report
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | --------------------------------------------------
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | PanDA job id: 6896297182
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | task id: 47556149
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | errors: (none)
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | pilot state: finished 
[2025-11-27 20:36:30] 2025-11-28 01:35:52,162 | INFO     | transexitcode: 0
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | exeerrorcode: 0
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | exeerrordiag: 
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | exitcode: 0
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | exitmsg: OK
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | cpuconsumptiontime: 314360 s
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | nevents: 1000
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | neventsw: 0
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | pid: 23735
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | pgrp: 23735
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | corecount: 9
[2025-11-27 20:36:30] 2025-11-28 01:35:52,163 | INFO     | event service: False
[2025-11-27 20:36:30] 2025-11-28 01:35:52,164 | INFO     | sizes: {0: 2283436, 1: 2284121, 2: 2284320, 3: 2284348, 14: 2284348, 24: 2284376, 32: 2284794, 36: 2284822, 160101: 2383965, 160109: 2392959, 160112: 2393015, 1601
[2025-11-27 20:36:30] 2025-11-28 01:35:52,164 | INFO     | --------------------------------------------------
[2025-11-27 20:36:30] 2025-11-28 01:35:52,164 | INFO     | 
[2025-11-27 20:36:30] 2025-11-28 01:35:52,164 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 20:36:30] 2025-11-28 01:35:52,283 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,283 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,283 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,283 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | job 6896297182 has completed (purged errors)
[2025-11-27 20:36:30] 2025-11-28 01:35:52,285 | INFO     | overall cleanup function is called
[2025-11-27 20:36:30] 2025-11-28 01:35:53,338 | INFO     | --- collectZombieJob: --- 10, [23735]
[2025-11-27 20:36:30] 2025-11-28 01:35:53,338 | INFO     | zombie collector waiting for pid 23735
[2025-11-27 20:36:30] 2025-11-28 01:35:53,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:36:30] 2025-11-28 01:35:53,339 | INFO     | collected zombie processes
[2025-11-27 20:36:30] 2025-11-28 01:35:53,339 | INFO     | will attempt to kill all subprocesses of pid=23735
[2025-11-27 20:36:30] 2025-11-28 01:35:54,084 | INFO     | process IDs to be killed: [23735] (in reverse order)
[2025-11-27 20:36:30] 2025-11-28 01:35:54,350 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:36:30] 2025-11-28 01:35:54,351 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:36:30] 2025-11-28 01:35:54,367 | INFO     | did not find any defunct processes belonging to 23735
[2025-11-27 20:36:30] 2025-11-28 01:35:54,383 | INFO     | did not find any defunct processes belonging to 23735
[2025-11-27 20:36:30] 2025-11-28 01:35:54,384 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:36:30] 2025-11-28 01:35:54,384 | INFO     | ready for new job
[2025-11-27 20:36:30] 2025-11-28 01:35:54,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:36:30] 2025-11-28 01:35:54,403 | INFO     | ***************************************
[2025-11-27 20:36:30] 2025-11-28 01:35:54,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:36:30] 2025-11-28 01:35:54,407 | INFO     | ***************************************
[2025-11-27 20:36:30] 2025-11-28 01:35:54,407 | INFO     | 
[2025-11-27 20:36:30] 2025-11-28 01:35:54,409 | INFO     | architecture information:
[2025-11-27 20:36:30] 2025-11-28 01:35:54,414 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:36:30] 2025-11-28 01:35:54,490 | INFO     | cat /etc/os-release:
[2025-11-27 20:36:30] NAME="CentOS Linux"
[2025-11-27 20:36:30] VERSION="7 (Core)"
[2025-11-27 20:36:30] ID="centos"
[2025-11-27 20:36:30] ID_LIKE="rhel fedora"
[2025-11-27 20:36:30] VERSION_ID="7"
[2025-11-27 20:36:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:36:30] ANSI_COLOR="0;31"
[2025-11-27 20:36:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:36:30] HOME_URL="https://www.centos.org/"
[2025-11-27 20:36:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:36:30] 
[2025-11-27 20:36:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:36:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:36:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:36:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:36:30] 
[2025-11-27 20:36:30] 2025-11-28 01:35:54,491 | INFO     | ***************************************
[2025-11-27 20:36:30] 2025-11-28 01:35:54,994 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 20:36:30] 2025-11-28 01:35:55,072 | INFO     | sufficient remaining disk space (49892294656 B)
[2025-11-27 20:36:30] 2025-11-28 01:35:55,073 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:36:30] 2025-11-28 01:35:55,073 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:36:30] 2025-11-28 01:35:55,073 | INFO     | update_server=False
[2025-11-27 20:36:30] 2025-11-28 01:35:55,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:36:30] 2025-11-28 01:35:55,076 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:36:30] 2025-11-28 01:35:55,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:36:30] 2025-11-28 01:35:55,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:36:30] 2025-11-28 01:35:55,077 | INFO     | aborting loop
[2025-11-27 20:36:30] 2025-11-28 01:35:55,386 | INFO     | all data control threads have been joined
[2025-11-27 20:36:30] 2025-11-28 01:35:55,758 | INFO     | all job control threads have been joined
[2025-11-27 20:36:30] 2025-11-28 01:35:55,802 | INFO     | all payload control threads have been joined
[2025-11-27 20:36:30] 2025-11-28 01:35:56,079 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,083 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,099 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,235 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,393 | INFO     | [data] control thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,507 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,519 | INFO     | [job] validate thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,631 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,636 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,709 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,750 [wrapper] supervise_pilot (15 min periods counter: 179)
[2025-11-27 20:36:30] 2025-11-28 01:35:56,764 | INFO     | [job] control thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,809 | INFO     | [payload] control thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:56,911 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:57,084 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:57,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:36:30] 2025-11-28 01:35:58,183 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:35:59,104 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:36:30] 2025-11-28 01:36:22,974 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:36:30] 2025-11-28 01:36:23,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642586388288)>', '<ExcThread(monitor, started 140641573000960)>']
[2025-11-27 20:36:30] 2025-11-28 01:36:24,259 | INFO     | PID=9845 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-27 20:36:30] 2025-11-28 01:36:24,259 | INFO     | .. there are 8 such processes running
[2025-11-27 20:36:30] 2025-11-28 01:36:24,260 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:36:30] 2025-11-28 01:36:24,261 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:36:30] 2025-11-28 01:36:24,261 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:36:30] 2025-11-28 01:36:24,261 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:36:30] 2025-11-28 01:36:24,261 | INFO     | [monitor] control thread has ended
[2025-11-27 20:36:30] 2025-11-28 01:36:29,007 | INFO     | all workflow threads have been joined
[2025-11-27 20:36:30] 2025-11-28 01:36:29,007 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:36:30] 2025-11-28 01:36:29,008 | INFO     | traces error code: 0
[2025-11-27 20:36:30] 2025-11-28 01:36:29,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:36:30] 2025-11-28 01:36:29,191 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:36:30] 2025-11-28 01:36:29,194 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:36:30] 2025-11-28 01:36:29,197 [wrapper] pilotpid: 9845
[2025-11-27 20:36:30] 2025-11-28 01:36:29,201 [wrapper] Pilot exit status: 0
[2025-11-27 20:36:30] 2025-11-28 01:36:29,235 [wrapper] pandaids: 6896297182
[2025-11-27 20:36:30] 2025-11-28 01:36:29,319 [wrapper] cleanup supervisor_pilot 3764319 9846
[2025-11-27 20:36:30] 2025-11-28 01:36:29,324 [wrapper] Test setup, not cleaning
[2025-11-27 20:36:30] 2025-11-28 01:36:29,327 [wrapper] apfmon messages muted
[2025-11-27 20:36:30] 2025-11-28 01:36:29,330 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:36:30] 2025-11-28 01:36:29,346 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:36:30]  *** Error codes and diagnostics ***
[2025-11-27 20:36:30]     "exeErrorCode": 0,
[2025-11-27 20:36:30]     "exeErrorDiag": "",
[2025-11-27 20:36:30]     "pilotErrorCode": 0,
[2025-11-27 20:36:30]     "pilotErrorDiag": "",
[2025-11-27 20:36:30]  *** Listing of results directory ***
[2025-11-27 20:36:30] total 1345620
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 19:51 queuedata.json
[2025-11-27 20:36:30] -rwx------. 1 boincer umatlas     36292 Nov 24 19:54 runpilot2-wrapper.sh
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:36:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 20:36:30] -rw-r--r--. 2 boincer umatlas 409543019 Nov 26 00:04 EVNT.47483658._001462.pool.root.1
[2025-11-27 20:36:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 20:36:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 20:36:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:04 input.tar.gz
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:04 pandaJob.out
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 20:36:30] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas       534 Nov 27 20:15 boinc_task_state.xml
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas      6658 Nov 27 20:29 init_data.xml
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas 915174443 Nov 27 20:34 HITS.47556149._004489.pool.root.1
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas      1059 Nov 27 20:35 memory_monitor_summary.json
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:35 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas   3499627 Nov 27 20:35 log.47556149._004489.job.log.tgz.1
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas      8620 Nov 27 20:35 heartbeat.json
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas        95 Nov 27 20:36 pilot_heartbeat.json
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas      4820 Nov 27 20:36 pilotlog.txt
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas  21137585 Nov 27 20:36 log.47556149._004489.job.log.1
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas        30 Nov 27 20:36 wrapper_checkpoint.txt
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:36 boinc_mmap_file
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas       353 Nov 27 20:36 output.list
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:36 runtime_log
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas  24657920 Nov 27 20:36 result.tar.gz
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas      9339 Nov 27 20:36 runtime_log.err
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas       662 Nov 27 20:36 O6lKDmHVwh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUGJKDmx3QxHm.diag
[2025-11-27 20:36:30] -rw-r--r--. 1 boincer umatlas     21845 Nov 27 20:36 stderr.txt
[2025-11-27 20:36:30] HITS file was successfully produced:
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas 915174443 Nov 27 20:34 shared/HITS.pool.root.1
[2025-11-27 20:36:30]  *** Contents of shared directory: ***
[2025-11-27 20:36:30] total 1318356
[2025-11-27 20:36:30] -rw-r--r--. 2 boincer umatlas 409543019 Nov 26 00:04 ATLAS.root_0
[2025-11-27 20:36:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-27 20:36:30] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:04 input.tar.gz
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas 915174443 Nov 27 20:34 HITS.pool.root.1
[2025-11-27 20:36:30] -rw-------. 1 boincer umatlas  24657920 Nov 27 20:36 result.tar.gz
20:36:31 (685): run_atlas exited; CPU time 316488.800547
20:36:31 (685): called boinc_finish(0)

</stderr_txt>
]]>

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