Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
22:16:36 (26959): wrapper (7.7.26015): starting
22:16:36 (26959): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:16:36] Arguments: --nthreads 8
[2025-11-25 22:16:36] Threads: 8
[2025-11-25 22:16:36] Checking for CVMFS
[2025-11-25 22:16:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:16:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:16:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:16:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:16:36] 2.11.0.0 4010 64583 85304 153298 1 49 2746423 4096000 5091 130560 1 4451779 99.433 5419091 591 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-25 22:16:36] CVMFS is ok
[2025-11-25 22:16:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:16:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:16:36] Further information can be found at the LHC@home message board.
[2025-11-25 22:16:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:16:36] Checking for apptainer binary...
[2025-11-25 22:16:36] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-25 22:16:36] apptainer is not installed, using version from CVMFS
[2025-11-25 22:16:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:16:36] WARNING: Environment variable TMPDIR already has value [/tmp/job_10924983/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node299
[2025-11-25 22:16:36] apptainer works
[2025-11-25 22:16:36] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:16:36] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:16:36] Starting ATLAS job with PandaID=6893862035
[2025-11-25 22:16:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10924983/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:54:14]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:54:14] 2025-11-26 01:53:56,371 | INFO     | log transfer has been attempted: DONE
[2025-11-26 02:54:14] 2025-11-26 01:53:56,371 | INFO     | job 6893862035 has finished - writing final server update
[2025-11-26 02:54:14] 2025-11-26 01:53:56,371 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 02:54:14] 2025-11-26 01:53:56,372 | INFO     | executing command: lscpu
[2025-11-26 02:54:14] 2025-11-26 01:53:56,402 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 02:54:14] 2025-11-26 01:53:57,117 | INFO     | time since job start (16636s) is within the limit (172800.0s)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,781 | INFO     | monitor loop #1218: job 0:6893862035 is in state 'finished'
[2025-11-26 02:54:14] 2025-11-26 01:53:58,781 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,957 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 02:54:14] 2025-11-26 01:53:58,974 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2973.461109375001
[2025-11-26 02:54:14] 2025-11-26 01:53:58,979 | INFO     | using path: /tmp/job_10924983/atlas/pilot/slots/0/PanDA_Pilot-6893862035/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,979 | INFO     | extracted standard info from prmon json
[2025-11-26 02:54:14] 2025-11-26 01:53:58,979 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:54:14] 2025-11-26 01:53:58,979 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:54:14] 2025-11-26 01:53:58,982 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:54:14] 2025-11-26 01:53:58,982 | INFO     | sum of square deviations: 6308980512.967013
[2025-11-26 02:54:14] 2025-11-26 01:53:58,983 | INFO     | sum of deviations: 1750428275449.1323
[2025-11-26 02:54:14] 2025-11-26 01:53:58,983 | INFO     | mean x: 1764113715.010989
[2025-11-26 02:54:14] 2025-11-26 01:53:58,983 | INFO     | mean y: 5760875.956043956
[2025-11-26 02:54:14] 2025-11-26 01:53:58,983 | INFO     | intersect: -489448045728.1527
[2025-11-26 02:54:14] 2025-11-26 01:53:58,983 | INFO     | chi2: 7.580776043635615
[2025-11-26 02:54:14] 2025-11-26 01:53:58,984 | INFO     | sum of square deviations: 5968640162.966398
[2025-11-26 02:54:14] 2025-11-26 01:53:58,984 | INFO     | sum of deviations: 1855623989792.6682
[2025-11-26 02:54:14] 2025-11-26 01:53:58,985 | INFO     | mean x: 1764113562.511194
[2025-11-26 02:54:14] 2025-11-26 01:53:58,985 | INFO     | mean y: 5807504.944029851
[2025-11-26 02:54:14] 2025-11-26 01:53:58,985 | INFO     | intersect: -548449344411.50903
[2025-11-26 02:54:14] 2025-11-26 01:53:58,985 | INFO     | chi2: 4.484433357034233
[2025-11-26 02:54:14] 2025-11-26 01:53:58,985 | INFO     | current chi2=4.484433357034233 (change=40.84466641381516 %)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,985 | INFO     | sum of square deviations: 5640765162.965782
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | sum of deviations: 1800296252682.5754
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | mean x: 1764113410.011407
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | mean y: 5781768.4752851715
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | intersect: -563025415169.4926
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | chi2: 4.241577829529101
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | current chi2=4.241577829529101 (change=5.415523170261678 %)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,986 | INFO     | right removable region: 262
[2025-11-26 02:54:14] 2025-11-26 01:53:58,987 | INFO     | sum of square deviations: 5968638332.966398
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | sum of deviations: 1585642389804.8845
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | mean x: 1764113867.511194
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | mean y: 5834541.205223881
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | intersect: -468652772786.0977
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | chi2: 6.2146289510937756
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | current chi2=6.2146289510937756 (change=18.021203695745353 %)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | left removable region: 10
[2025-11-26 02:54:14] 2025-11-26 01:53:58,988 | INFO     | sum of square deviations: 4962168466.964269
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | sum of deviations: 1511053009419.203
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | mean x: 1764113684.5119047
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | mean y: 5914098.099206349
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | intersect: -537192552597.67224
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | chi2: 2.7686023293395983
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | current memory leak: 304.51 B/s (using 252 data points, chi2=2.77)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,989 | INFO     | could have reported an average CPU frequency of 2721 MHz (12 samples)
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | ..............................
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . Timing measurements:
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . get job = 0 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . initial setup = 1 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . payload setup = 2 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . stage-in = 0 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . payload execution = 16611 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . stage-out = 1 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | . log creation = 0 s
[2025-11-26 02:54:14] 2025-11-26 01:53:58,990 | INFO     | ..............................
[2025-11-26 02:54:14] 2025-11-26 01:53:59,122 | INFO     | time since job start (16638s) is within the limit (172800.0s)
[2025-11-26 02:54:14] 2025-11-26 01:53:59,397 | INFO     | 
[2025-11-26 02:54:14] 2025-11-26 01:53:59,397 | INFO     | job summary report
[2025-11-26 02:54:14] 2025-11-26 01:53:59,397 | INFO     | --------------------------------------------------
[2025-11-26 02:54:14] 2025-11-26 01:53:59,397 | INFO     | PanDA job id: 6893862035
[2025-11-26 02:54:14] 2025-11-26 01:53:59,397 | INFO     | task id: 47523449
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | errors: (none)
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | pilot state: finished 
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | transexitcode: 0
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | exeerrorcode: 0
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | exeerrordiag: 
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | exitcode: 0
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | exitmsg: OK
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | cpuconsumptiontime: 118770 s
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | nevents: 1000
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | neventsw: 0
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | pid: 5380
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | pgrp: 5380
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | corecount: 8
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | event service: False
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 16618: 2317599, 16620: 2326623, 16622: 2326679, 16625: 2327053}
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | --------------------------------------------------
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | 
[2025-11-26 02:54:14] 2025-11-26 01:53:59,398 | INFO     | executing command: ls -lF /tmp/job_10924983/atlas/pilot/slots/0
[2025-11-26 02:54:14] 2025-11-26 01:53:59,407 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,407 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,407 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | job 6893862035 has completed (purged errors)
[2025-11-26 02:54:14] 2025-11-26 01:53:59,408 | INFO     | overall cleanup function is called
[2025-11-26 02:54:14] 2025-11-26 01:54:00,415 | INFO     | --- collectZombieJob: --- 10, [5380]
[2025-11-26 02:54:14] 2025-11-26 01:54:00,416 | INFO     | zombie collector waiting for pid 5380
[2025-11-26 02:54:14] 2025-11-26 01:54:00,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:54:14] 2025-11-26 01:54:00,416 | INFO     | collected zombie processes
[2025-11-26 02:54:14] 2025-11-26 01:54:00,416 | INFO     | will attempt to kill all subprocesses of pid=5380
[2025-11-26 02:54:14] 2025-11-26 01:54:00,528 | INFO     | process IDs to be killed: [5380] (in reverse order)
[2025-11-26 02:54:14] 2025-11-26 01:54:00,570 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:54:14] 2025-11-26 01:54:00,570 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:54:14] 2025-11-26 01:54:00,575 | INFO     | did not find any defunct processes belonging to 5380
[2025-11-26 02:54:14] 2025-11-26 01:54:00,579 | INFO     | did not find any defunct processes belonging to 5380
[2025-11-26 02:54:14] 2025-11-26 01:54:00,579 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:54:14] 2025-11-26 01:54:00,579 | INFO     | ready for new job
[2025-11-26 02:54:14] 2025-11-26 01:54:00,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:54:14] 2025-11-26 01:54:00,580 | INFO     | ***************************************
[2025-11-26 02:54:14] 2025-11-26 01:54:00,580 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:54:14] 2025-11-26 01:54:00,580 | INFO     | ***************************************
[2025-11-26 02:54:14] 2025-11-26 01:54:00,580 | INFO     | 
[2025-11-26 02:54:14] 2025-11-26 01:54:00,595 | INFO     | architecture information:
[2025-11-26 02:54:14] 2025-11-26 01:54:00,595 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:54:14] 2025-11-26 01:54:00,601 | INFO     | cat /etc/os-release:
[2025-11-26 02:54:14] NAME="CentOS Linux"
[2025-11-26 02:54:14] VERSION="7 (Core)"
[2025-11-26 02:54:14] ID="centos"
[2025-11-26 02:54:14] ID_LIKE="rhel fedora"
[2025-11-26 02:54:14] VERSION_ID="7"
[2025-11-26 02:54:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:54:14] ANSI_COLOR="0;31"
[2025-11-26 02:54:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:54:14] HOME_URL="https://www.centos.org/"
[2025-11-26 02:54:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:54:14] 
[2025-11-26 02:54:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:54:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:54:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:54:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:54:14] 
[2025-11-26 02:54:14] 2025-11-26 01:54:00,601 | INFO     | ***************************************
[2025-11-26 02:54:14] 2025-11-26 01:54:01,104 | INFO     | executing command: df -mP /tmp/job_10924983/atlas/pilot/slots/0
[2025-11-26 02:54:14] 2025-11-26 01:54:01,111 | INFO     | sufficient remaining disk space (221474979840 B)
[2025-11-26 02:54:14] 2025-11-26 01:54:01,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:54:14] 2025-11-26 01:54:01,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:54:14] 2025-11-26 01:54:01,111 | INFO     | update_server=False
[2025-11-26 02:54:14] 2025-11-26 01:54:01,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:54:14] 2025-11-26 01:54:01,111 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 02:54:14] 2025-11-26 01:54:01,112 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:54:14] 2025-11-26 01:54:01,112 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:54:14] 2025-11-26 01:54:01,112 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:54:14] 2025-11-26 01:54:01,208 | INFO     | all data control threads have been joined
[2025-11-26 02:54:14] 2025-11-26 01:54:01,284 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:54:14] 2025-11-26 01:54:01,284 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:54:14] 2025-11-26 01:54:01,284 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:54:14] 2025-11-26 01:54:01,284 | INFO     | will abort loop
[2025-11-26 02:54:14] 2025-11-26 01:54:01,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:54:14] 2025-11-26 01:54:01,479 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:54:14] 2025-11-26 01:54:02,028 | INFO     | all payload control threads have been joined
[2025-11-26 02:54:14] 2025-11-26 01:54:02,066 | INFO     | all job control threads have been joined
[2025-11-26 02:54:14] 2025-11-26 01:54:02,117 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,211 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,212 | INFO     | [data] control thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,248 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,289 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,507 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,770 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:02,895 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:03,033 | INFO     | [payload] control thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:03,071 | INFO     | [job] control thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:03,355 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:03,483 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:03,539 | INFO     | [job] validate thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:04,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:54:14] 2025-11-26 01:54:05,055 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:05,316 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:54:14] 2025-11-26 01:54:08,774 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:54:14] 2025-11-26 01:54:09,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-26 02:54:14] 2025-11-26 01:54:10,156 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:54:14] 2025-11-26 01:54:10,156 | INFO     | [monitor] control thread has ended
[2025-11-26 02:54:14] 2025-11-26 01:54:14,188 | INFO     | all workflow threads have been joined
[2025-11-26 02:54:14] 2025-11-26 01:54:14,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:54:14] 2025-11-26 01:54:14,188 | INFO     | traces error code: 0
[2025-11-26 02:54:14] 2025-11-26 01:54:14,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:54:14] 2025-11-26 01:54:14,240 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:54:14] 2025-11-26 01:54:14,242 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:54:14] 2025-11-26 01:54:14,242 [wrapper] pilotpid: 30739
[2025-11-26 02:54:14] 2025-11-26 01:54:14,243 [wrapper] Pilot exit status: 0
[2025-11-26 02:54:14] 2025-11-26 01:54:14,247 [wrapper] pandaids: 6893862035
[2025-11-26 02:54:14] 2025-11-26 01:54:14,271 [wrapper] cleanup supervisor_pilot 29168 30740
[2025-11-26 02:54:14] 2025-11-26 01:54:14,272 [wrapper] Test setup, not cleaning
[2025-11-26 02:54:14] 2025-11-26 01:54:14,273 [wrapper] apfmon messages muted
[2025-11-26 02:54:14] 2025-11-26 01:54:14,274 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:54:14] 2025-11-26 01:54:14,275 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:54:14]  *** Error codes and diagnostics ***
[2025-11-26 02:54:14]     "exeErrorCode": 0,
[2025-11-26 02:54:14]     "exeErrorDiag": "",
[2025-11-26 02:54:14]     "pilotErrorCode": 0,
[2025-11-26 02:54:14]     "pilotErrorDiag": "",
[2025-11-26 02:54:14]  *** Listing of results directory ***
[2025-11-26 02:54:14] total 1315916
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user    576529 Nov 20 15:06 pilot3.tar.gz
[2025-11-26 02:54:14] -rwx------ 1 mf493845 unix-user     36292 Nov 20 15:10 runpilot2-wrapper.sh
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      5112 Nov 20 15:10 queuedata.json
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user       100 Nov 25 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:54:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 25 22:16 run_atlas
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user       105 Nov 25 22:16 job.xml
[2025-11-26 02:54:14] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 25 22:16 start_atlas.sh
[2025-11-26 02:54:14] drwxrwx--x 2 mf493845 unix-user       100 Nov 25 22:16 shared
[2025-11-26 02:54:14] -rw-r--r-- 2 mf493845 unix-user    590097 Nov 25 22:16 input.tar.gz
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      6391 Nov 25 22:16 init_data.xml
[2025-11-26 02:54:14] -rw-r--r-- 2 mf493845 unix-user 408722670 Nov 25 22:16 EVNT.47493127._000588.pool.root.1
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user         0 Nov 25 22:16 boinc_setup_complete
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      8192 Nov 25 22:16 boinc_mmap_file
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user         0 Nov 25 22:16 boinc_lockfile
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      2786 Nov 25 22:16 pandaJob.out
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user    991893 Nov 25 22:16 agis_schedconf.cvmfs.json
[2025-11-26 02:54:14] drwx------ 5 mf493845 unix-user       440 Nov 25 22:16 pilot3
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user 927019108 Nov 26 02:53 HITS.47523449._005879.pool.root.1
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      1031 Nov 26 02:53 memory_monitor_summary.json
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user        95 Nov 26 02:53 pilot_heartbeat.json
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user   1516240 Nov 26 02:53 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user   1564375 Nov 26 02:53 log.47523449._005879.job.log.tgz.1
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      8592 Nov 26 02:53 heartbeat.json
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      4752 Nov 26 02:54 pilotlog.txt
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user   2369825 Nov 26 02:54 log.47523449._005879.job.log.1
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user       353 Nov 26 02:54 output.list
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user       620 Nov 26 02:54 runtime_log
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user   3952640 Nov 26 02:54 result.tar.gz
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user      9221 Nov 26 02:54 runtime_log.err
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user       651 Nov 26 02:54 R2WKDmNYKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr2HKDmLBNZIn.diag
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user     21908 Nov 26 02:54 stderr.txt
[2025-11-26 02:54:14] HITS file was successfully produced:
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user 927019108 Nov 26 02:53 shared/HITS.pool.root.1
[2025-11-26 02:54:14]  *** Contents of shared directory: ***
[2025-11-26 02:54:14] total 1308896
[2025-11-26 02:54:14] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 25 22:16 start_atlas.sh
[2025-11-26 02:54:14] -rw-r--r-- 2 mf493845 unix-user    590097 Nov 25 22:16 input.tar.gz
[2025-11-26 02:54:14] -rw-r--r-- 2 mf493845 unix-user 408722670 Nov 25 22:16 ATLAS.root_0
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user 927019108 Nov 26 02:53 HITS.pool.root.1
[2025-11-26 02:54:14] -rw------- 1 mf493845 unix-user   3952640 Nov 26 02:54 result.tar.gz
02:54:16 (26959): run_atlas exited; CPU time 118930.632710
02:54:16 (26959): called boinc_finish(0)

</stderr_txt>
]]>

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