Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:03:37 (649635): wrapper (7.7.26015): starting
16:03:37 (649635): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:03:37] Arguments: --nthreads 8
[2025-11-25 16:03:37] Threads: 8
[2025-11-25 16:03:37] Checking for CVMFS
[2025-11-25 16:03:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:03:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:03:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:03:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:03:38] 2.13.3.0 12537 29123 371304 153297 2 410 26741678 40960001 33465 16776704 43 166162466 99.715 126258709 37827 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:03:38] CVMFS is ok
[2025-11-25 16:03:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:03:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:03:38] Further information can be found at the LHC@home message board.
[2025-11-25 16:03:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:03:38] Checking for apptainer binary...
[2025-11-25 16:03:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:03:38] Running /usr/bin/apptainer --version
[2025-11-25 16:03:38] apptainer version 1.4.4-1.el9
[2025-11-25 16:03:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:03:39] c7-11-14.aglt2.org
[2025-11-25 16:03:39] apptainer works
[2025-11-25 16:03:39] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:03:39] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:03:39] Starting ATLAS job with PandaID=6896297581
[2025-11-25 16:03:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:10 (649635): BOINC client no longer exists - exiting
20:00:10 (649635): timer handler: client dead, exiting
20:09:46 (2223792): wrapper (7.7.26015): starting
20:09:46 (2223792): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 20:09:46] Arguments: --nthreads 9
[2025-11-25 20:09:46] Threads: 9
[2025-11-25 20:09:46] This job has been restarted, cleaning up previous attempt
[2025-11-25 20:09:46] Checking for CVMFS
[2025-11-25 20:09:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:09:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:09:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:09:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:09:46] 2.13.3.0 12537 29369 372528 153303 0 334 35141879 40960000 29969 16776704 43 168772862 99.714 128527479 37370 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 20:09:46] CVMFS is ok
[2025-11-25 20:09:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:09:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:09:46] Further information can be found at the LHC@home message board.
[2025-11-25 20:09:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:09:46] Checking for apptainer binary...
[2025-11-25 20:09:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:09:46] Running /usr/bin/apptainer --version
[2025-11-25 20:09:46] apptainer version 1.4.4-1.el9
[2025-11-25 20:09:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:09:47] c7-11-14.aglt2.org
[2025-11-25 20:09:47] apptainer works
[2025-11-25 20:09:47] Set ATHENA_PROC_NUMBER=9
[2025-11-25 20:09:47] Set ATHENA_CORE_NUMBER=9
[2025-11-25 20:09:47] Starting ATLAS job with PandaID=6896297581
[2025-11-25 20:09:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:22:40]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:22:40] 2025-11-27 00:22:04,232 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:22:40] 2025-11-27 00:22:04,236 | INFO     | sum of square deviations: 795584367993.6299
[2025-11-26 19:22:40] 2025-11-27 00:22:04,306 | INFO     | sum of deviations: 4527140064074.231
[2025-11-26 19:22:40] 2025-11-27 00:22:04,306 | INFO     | mean x: 1764161151.8612125
[2025-11-26 19:22:40] 2025-11-27 00:22:04,306 | INFO     | mean y: 3089605.2644265885
[2025-11-26 19:22:40] 2025-11-27 00:22:04,307 | INFO     | intersect: -10035574993.20615
[2025-11-26 19:22:40] 2025-11-27 00:22:04,308 | INFO     | chi2: 7.081617612235917
[2025-11-26 19:22:40] 2025-11-27 00:22:04,313 | INFO     | sum of square deviations: 786899336829.9095
[2025-11-26 19:22:40] 2025-11-27 00:22:04,369 | INFO     | sum of deviations: 5034134701253.503
[2025-11-26 19:22:40] 2025-11-27 00:22:04,369 | INFO     | mean x: 1764160999.3643694
[2025-11-26 19:22:40] 2025-11-27 00:22:04,369 | INFO     | mean y: 3098506.129765396
[2025-11-26 19:22:40] 2025-11-27 00:22:04,370 | INFO     | intersect: -11283000858.59481
[2025-11-26 19:22:40] 2025-11-27 00:22:04,370 | INFO     | chi2: 3.774354703404465
[2025-11-26 19:22:40] 2025-11-27 00:22:04,371 | INFO     | current chi2=3.774354703404465 (change=46.70208263034456 %)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,376 | INFO     | sum of square deviations: 778277748716.1594
[2025-11-26 19:22:40] 2025-11-27 00:22:04,474 | INFO     | sum of deviations: 5293494773847.428
[2025-11-26 19:22:40] 2025-11-27 00:22:04,475 | INFO     | mean x: 1764160846.8675497
[2025-11-26 19:22:40] 2025-11-27 00:22:04,475 | INFO     | mean y: 3103085.9801324503
[2025-11-26 19:22:40] 2025-11-27 00:22:04,475 | INFO     | intersect: -11995924560.029875
[2025-11-26 19:22:40] 2025-11-27 00:22:04,476 | INFO     | chi2: 2.2550807342464005
[2025-11-26 19:22:40] 2025-11-27 00:22:04,476 | INFO     | current chi2=2.2550807342464005 (change=40.25254880755326 %)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,477 | INFO     | sum of square deviations: 769719122517.0996
[2025-11-26 19:22:40] 2025-11-27 00:22:04,562 | INFO     | sum of deviations: 5246977367012.401
[2025-11-26 19:22:40] 2025-11-27 00:22:04,562 | INFO     | mean x: 1764160694.3685377
[2025-11-26 19:22:40] 2025-11-27 00:22:04,562 | INFO     | mean y: 3102257.1174298376
[2025-11-26 19:22:40] 2025-11-27 00:22:04,563 | INFO     | intersect: -12022727638.928791
[2025-11-26 19:22:40] 2025-11-27 00:22:04,564 | INFO     | chi2: 2.2539966289649658
[2025-11-26 19:22:40] 2025-11-27 00:22:04,564 | INFO     | current chi2=2.2539966289649658 (change=0.04807390107906939 %)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,564 | INFO     | right removable region: 1353
[2025-11-26 19:22:40] 2025-11-27 00:22:04,565 | INFO     | sum of square deviations: 786898784293.3635
[2025-11-26 19:22:40] 2025-11-27 00:22:04,681 | INFO     | sum of deviations: 4171493616254.673
[2025-11-26 19:22:40] 2025-11-27 00:22:04,681 | INFO     | mean x: 1764161304.362903
[2025-11-26 19:22:40] 2025-11-27 00:22:04,682 | INFO     | mean y: 3095843.0410557184
[2025-11-26 19:22:40] 2025-11-27 00:22:04,682 | INFO     | intersect: -9349044185.745405
[2025-11-26 19:22:40] 2025-11-27 00:22:04,703 | INFO     | chi2: 5.281710417252623
[2025-11-26 19:22:40] 2025-11-27 00:22:04,703 | INFO     | current chi2=5.281710417252623 (change=25.416610914903654 %)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,704 | INFO     | sum of square deviations: 778277060150.7153
[2025-11-26 19:22:40] 2025-11-27 00:22:04,746 | INFO     | sum of deviations: 4028696168841.0586
[2025-11-26 19:22:40] 2025-11-27 00:22:04,747 | INFO     | mean x: 1764161456.860927
[2025-11-26 19:22:40] 2025-11-27 00:22:04,753 | INFO     | mean y: 3098368.5717439293
[2025-11-26 19:22:40] 2025-11-27 00:22:04,753 | INFO     | intersect: -9128958666.613564
[2025-11-26 19:22:40] 2025-11-27 00:22:04,754 | INFO     | chi2: 5.1591192590503265
[2025-11-26 19:22:40] 2025-11-27 00:22:04,754 | INFO     | current chi2=5.1591192590503265 (change=2.321050351451576 %)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,755 | INFO     | left removable region: 20
[2025-11-26 19:22:40] 2025-11-27 00:22:04,757 | INFO     | sum of square deviations: 734457803590.2347
[2025-11-26 19:22:40] 2025-11-27 00:22:04,945 | INFO     | sum of deviations: 4524514570012.104
[2025-11-26 19:22:40] 2025-11-27 00:22:04,946 | INFO     | mean x: 1764161273.8664665
[2025-11-26 19:22:40] 2025-11-27 00:22:04,946 | INFO     | mean y: 3114993.6354088522
[2025-11-26 19:22:40] 2025-11-27 00:22:04,946 | INFO     | intersect: -10864729759.925417
[2025-11-26 19:22:40] 2025-11-27 00:22:04,947 | INFO     | chi2: 0.22031684788481118
[2025-11-26 19:22:40] 2025-11-27 00:22:04,947 | INFO     | current memory leak: 6.16 B/s (using 1333 data points, chi2=0.22)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,998 | INFO     | time since job start (83525s) is within the limit (172800.0s)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,998 | INFO     | could have reported an average CPU frequency of 3290 MHz (49 samples)
[2025-11-26 19:22:40] 2025-11-27 00:22:04,998 | INFO     | ..............................
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . Timing measurements:
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . get job = 0 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . initial setup = 2 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . payload setup = 6 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . stage-in = 0 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . payload execution = 83470 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . stage-out = 4 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | . log creation = 1 s
[2025-11-26 19:22:40] 2025-11-27 00:22:04,999 | INFO     | ..............................
[2025-11-26 19:22:40] 2025-11-27 00:22:05,141 | INFO     | 
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | job summary report
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | --------------------------------------------------
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | PanDA job id: 6896297581
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | task id: 47556149
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | errors: (none)
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | pilot state: finished 
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | transexitcode: 0
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | exeerrorcode: 0
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | exeerrordiag: 
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | exitcode: 0
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | exitmsg: OK
[2025-11-26 19:22:40] 2025-11-27 00:22:05,142 | INFO     | cpuconsumptiontime: 201458 s
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | nevents: 1000
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | neventsw: 0
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | pid: 2290846
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | pgrp: 2290846
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | corecount: 9
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | event service: False
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | sizes: {0: 2284258, 1: 2284258, 5: 2284548, 11: 2284604, 83480: 2349037, 83481: 2349036, 83486: 2358214, 83490: 2358270, 83510: 2358516}
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | --------------------------------------------------
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | 
[2025-11-26 19:22:40] 2025-11-27 00:22:05,143 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 19:22:40] 2025-11-27 00:22:05,174 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,175 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | job 6896297581 has completed (purged errors)
[2025-11-26 19:22:40] 2025-11-27 00:22:05,176 | INFO     | overall cleanup function is called
[2025-11-26 19:22:40] 2025-11-27 00:22:06,236 | INFO     | --- collectZombieJob: --- 10, [2290846]
[2025-11-26 19:22:40] 2025-11-27 00:22:06,236 | INFO     | zombie collector waiting for pid 2290846
[2025-11-26 19:22:40] 2025-11-27 00:22:06,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:22:40] 2025-11-27 00:22:06,236 | INFO     | collected zombie processes
[2025-11-26 19:22:40] 2025-11-27 00:22:06,236 | INFO     | will attempt to kill all subprocesses of pid=2290846
[2025-11-26 19:22:40] 2025-11-27 00:22:06,979 | INFO     | process IDs to be killed: [2290846] (in reverse order)
[2025-11-26 19:22:40] 2025-11-27 00:22:07,257 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:22:40] 2025-11-27 00:22:07,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:22:40] 2025-11-27 00:22:07,308 | INFO     | did not find any defunct processes belonging to 2290846
[2025-11-26 19:22:40] 2025-11-27 00:22:07,338 | INFO     | did not find any defunct processes belonging to 2290846
[2025-11-26 19:22:40] 2025-11-27 00:22:07,340 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:22:40] 2025-11-27 00:22:07,340 | INFO     | ready for new job
[2025-11-26 19:22:40] 2025-11-27 00:22:07,340 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:22:40] 2025-11-27 00:22:07,346 | INFO     | ***************************************
[2025-11-26 19:22:40] 2025-11-27 00:22:07,346 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:22:40] 2025-11-27 00:22:07,346 | INFO     | ***************************************
[2025-11-26 19:22:40] 2025-11-27 00:22:07,346 | INFO     | 
[2025-11-26 19:22:40] 2025-11-27 00:22:07,349 | INFO     | architecture information:
[2025-11-26 19:22:40] 2025-11-27 00:22:07,353 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:22:40] 2025-11-27 00:22:07,396 | INFO     | cat /etc/os-release:
[2025-11-26 19:22:40] NAME="CentOS Linux"
[2025-11-26 19:22:40] VERSION="7 (Core)"
[2025-11-26 19:22:40] ID="centos"
[2025-11-26 19:22:40] ID_LIKE="rhel fedora"
[2025-11-26 19:22:40] VERSION_ID="7"
[2025-11-26 19:22:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:22:40] ANSI_COLOR="0;31"
[2025-11-26 19:22:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:22:40] HOME_URL="https://www.centos.org/"
[2025-11-26 19:22:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:22:40] 
[2025-11-26 19:22:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:22:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:22:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:22:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:22:40] 
[2025-11-26 19:22:40] 2025-11-27 00:22:07,396 | INFO     | ***************************************
[2025-11-26 19:22:40] 2025-11-27 00:22:07,902 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 19:22:40] 2025-11-27 00:22:07,929 | INFO     | sufficient remaining disk space (76679217152 B)
[2025-11-26 19:22:40] 2025-11-27 00:22:07,929 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:22:40] 2025-11-27 00:22:07,929 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:22:40] 2025-11-27 00:22:07,930 | INFO     | update_server=False
[2025-11-26 19:22:40] 2025-11-27 00:22:07,930 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:22:40] 2025-11-27 00:22:07,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:22:40] 2025-11-27 00:22:08,097 | INFO     | all data control threads have been joined
[2025-11-26 19:22:40] 2025-11-27 00:22:08,198 | INFO     | all job control threads have been joined
[2025-11-26 19:22:40] 2025-11-27 00:22:08,299 | INFO     | all payload control threads have been joined
[2025-11-26 19:22:40] 2025-11-27 00:22:08,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:22:40] 2025-11-27 00:22:08,552 | INFO     | aborting loop
[2025-11-26 19:22:40] 2025-11-27 00:22:08,946 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:08,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:22:40] 2025-11-27 00:22:08,993 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,069 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,103 | INFO     | [data] control thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,141 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,155 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,204 | INFO     | [job] control thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,304 | INFO     | [payload] control thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,440 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,557 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,917 | INFO     | [job] validate thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,918 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:09,939 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:10,156 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:10,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:22:40] 2025-11-27 00:22:11,206 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:12,956 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:22:40] 2025-11-27 00:22:23,703 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:22:40] 2025-11-27 00:22:23,933 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108759693120)>', '<ExcThread(monitor, started 140108141426432)>']
[2025-11-26 19:22:40] 2025-11-27 00:22:28,963 | INFO     | all workflow threads have been joined
[2025-11-26 19:22:40] 2025-11-27 00:22:28,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:22:40] 2025-11-27 00:22:28,963 | INFO     | traces error code: 0
[2025-11-26 19:22:40] 2025-11-27 00:22:28,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:22:40] 2025-11-27 00:22:38,967 | INFO     | PID=2244630 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:22:40] 2025-11-27 00:22:38,968 | INFO     | .. there are 53 such processes running
[2025-11-26 19:22:40] 2025-11-27 00:22:38,969 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:22:40] 2025-11-27 00:22:38,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:22:40] 2025-11-27 00:22:38,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:22:40] 2025-11-27 00:22:38,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:22:40] 2025-11-27 00:22:38,969 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 19:22:40] 2025-11-27 00:22:38,969 | INFO     | [monitor] control thread has ended
[2025-11-26 19:22:40] 2025-11-27 00:22:39,154 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:22:40] 2025-11-27 00:22:39,191 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:22:40] 2025-11-27 00:22:39,301 [wrapper] pilotpid: 2244630
[2025-11-26 19:22:40] 2025-11-27 00:22:39,435 [wrapper] Pilot exit status: 0
[2025-11-26 19:22:40] 2025-11-27 00:22:39,560 [wrapper] pandaids: 6896297581 6896297581
[2025-11-26 19:22:40] 2025-11-27 00:22:39,856 [wrapper] cleanup supervisor_pilot 2299049 2244633
[2025-11-26 19:22:40] 2025-11-27 00:22:39,860 [wrapper] Test setup, not cleaning
[2025-11-26 19:22:40] 2025-11-27 00:22:39,872 [wrapper] apfmon messages muted
[2025-11-26 19:22:40] 2025-11-27 00:22:39,877 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:22:40] 2025-11-27 00:22:39,880 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:22:40]  *** Error codes and diagnostics ***
[2025-11-26 19:22:40]     "exeErrorCode": 0,
[2025-11-26 19:22:40]     "exeErrorDiag": "",
[2025-11-26 19:22:40]     "pilotErrorCode": 0,
[2025-11-26 19:22:40]     "pilotErrorDiag": "",
[2025-11-26 19:22:40]  *** Listing of results directory ***
[2025-11-26 19:22:40] total 1720324
[2025-11-26 19:22:40] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 19:10 pilot3.tar.gz
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 20:03 queuedata.json
[2025-11-26 19:22:40] -rwx------. 1 boincer umatlas     36292 Nov 24 20:04 runpilot2-wrapper.sh
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas       100 Nov 25 16:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:22:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 16:03 run_atlas
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas       105 Nov 25 16:03 job.xml
[2025-11-26 19:22:40] -rw-r--r--. 3 boincer umatlas 409872735 Nov 25 16:03 EVNT.47483658._001468.pool.root.1
[2025-11-26 19:22:40] -rw-r--r--. 3 boincer umatlas 409872735 Nov 25 16:03 ATLAS.root_0
[2025-11-26 19:22:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 16:03 start_atlas.sh
[2025-11-26 19:22:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 16:03 shared
[2025-11-26 19:22:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 16:03 input.tar.gz
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas         0 Nov 25 16:03 boinc_lockfile
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas      2782 Nov 25 20:09 pandaJob.out
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas        57 Nov 25 20:09 setup.sh.local
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas    991877 Nov 25 20:09 agis_schedconf.cvmfs.json
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas       532 Nov 26 19:11 boinc_task_state.xml
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas      6904 Nov 26 19:20 init_data.xml
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas 910947297 Nov 26 19:20 HITS.47556149._004541.pool.root.1
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas      1059 Nov 26 19:21 memory_monitor_summary.json
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas   2542433 Nov 26 19:21 log.47556149._004541.job.log.tgz.1
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas      8601 Nov 26 19:22 heartbeat.json
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:22 wrapper_checkpoint.txt
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:22 boinc_mmap_file
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas        96 Nov 26 19:22 pilot_heartbeat.json
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas       893 Nov 26 19:22 pilotlog.txt
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas  10954646 Nov 26 19:22 log.47556149._004541.job.log.1
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas       353 Nov 26 19:22 output.list
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:22 runtime_log
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas  13516800 Nov 26 19:22 result.tar.gz
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas      9428 Nov 26 19:22 runtime_log.err
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas       790 Nov 26 19:22 JdHMDmhewh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm01LKDmyoIzbn.diag
[2025-11-26 19:22:40] -rw-r--r--. 1 boincer umatlas     23438 Nov 26 19:22 stderr.txt
[2025-11-26 19:22:40] HITS file was successfully produced:
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas 910947297 Nov 26 19:20 shared/HITS.pool.root.1
[2025-11-26 19:22:40]  *** Contents of shared directory: ***
[2025-11-26 19:22:40] total 1303672
[2025-11-26 19:22:40] -rw-r--r--. 3 boincer umatlas 409872735 Nov 25 16:03 ATLAS.root_0
[2025-11-26 19:22:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 16:03 start_atlas.sh
[2025-11-26 19:22:40] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 16:03 input.tar.gz
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas 910947297 Nov 26 19:20 HITS.pool.root.1
[2025-11-26 19:22:40] -rw-------. 1 boincer umatlas  13516800 Nov 26 19:22 result.tar.gz
19:22:41 (2223792): run_atlas exited; CPU time 202538.023005
19:22:41 (2223792): called boinc_finish(0)

</stderr_txt>
]]>

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