Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:41 (1642206): wrapper (7.7.26015): starting
22:13:41 (1642206): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 22:13:41] Arguments: --nthreads 3
[2025-11-25 22:13:41] Threads: 3
[2025-11-25 22:13:41] Checking for CVMFS
[2025-11-25 22:13:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:13:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:13:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:13:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:13:41] 2.9.2.0 1308651 71 63272 153297 0 88 35358325 36864001 0 130560 0 1001703 99.998 4062 3806 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 22:13:41] CVMFS is ok
[2025-11-25 22:13:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:13:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:13:41] Further information can be found at the LHC@home message board.
[2025-11-25 22:13:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:13:41] Checking for apptainer binary...
[2025-11-25 22:13:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:13:41] Running /usr/bin/apptainer --version
[2025-11-25 22:13:41] apptainer version 1.4.1-1.1
[2025-11-25 22:13:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:13:41] thA335
[2025-11-25 22:13:41] apptainer works
[2025-11-25 22:13:41] Set ATHENA_PROC_NUMBER=3
[2025-11-25 22:13:41] Set ATHENA_CORE_NUMBER=3
[2025-11-25 22:13:42] Starting ATLAS job with PandaID=6896297573
[2025-11-25 22:13:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:18:02]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:18:02] 2025-11-25 21:17:09,614 | INFO     | ***************************************
[2025-11-25 22:18:02] 2025-11-25 21:17:10,117 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | INFO     | sufficient remaining disk space (826662715392 B)
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | INFO     | update_server=False
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:18:02] 2025-11-25 21:17:10,131 | INFO     | aborting loop
[2025-11-25 22:18:02] 2025-11-25 21:17:10,132 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:18:02] 2025-11-25 21:17:10,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:18:02] 2025-11-25 21:17:10,952 | INFO     | all data control threads have been joined
[2025-11-25 22:18:02] 2025-11-25 21:17:11,137 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:11,138 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:11,139 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:11,246 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:11,253 | INFO     | all payload control threads have been joined
[2025-11-25 22:18:02] 2025-11-25 21:17:11,828 | INFO     | all job control threads have been joined
[2025-11-25 22:18:02] 2025-11-25 21:17:11,876 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:11,958 | INFO     | [data] control thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,114 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,128 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,249 | INFO     | [job] validate thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,259 | INFO     | [payload] control thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,328 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,387 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,602 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,736 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,834 | INFO     | [job] control thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:12,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:18:02] 2025-11-25 21:17:16,933 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:18:02] 2025-11-25 21:17:40,600 | INFO     | PID=1645937 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:18:02] 2025-11-25 21:17:40,600 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:18:02] 2025-11-25 21:17:40,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:18:02] 2025-11-25 21:17:40,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:18:02] 2025-11-25 21:17:55,572 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:18:02] 2025-11-25 21:17:56,806 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049392215872)>', '<ExcThread(monitor, started 140048674580224)>']
[2025-11-25 22:18:02] 2025-11-25 21:17:57,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:18:02] 2025-11-25 21:17:57,690 | INFO     | [monitor] control thread has ended
[2025-11-25 22:18:02] 2025-11-25 21:18:01,832 | INFO     | all workflow threads have been joined
[2025-11-25 22:18:02] 2025-11-25 21:18:01,833 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:18:02] 2025-11-25 21:18:01,833 | INFO     | traces error code: 0
[2025-11-25 22:18:02] 2025-11-25 21:18:01,834 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:18:02] 2025-11-25 21:18:01,883 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:18:02] 2025-11-25 21:18:01,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:18:02] 2025-11-25 21:18:01,890 [wrapper] pilotpid: 1645937
[2025-11-25 22:18:02] 2025-11-25 21:18:01,893 [wrapper] Pilot exit status: 0
[2025-11-25 22:18:02] 2025-11-25 21:18:01,900 [wrapper] pandaids: 6896297573
[2025-11-25 22:18:02] 2025-11-25 21:18:01,917 [wrapper] cleanup supervisor_pilot 1645943 1645938
[2025-11-25 22:18:02] 2025-11-25 21:18:01,920 [wrapper] Test setup, not cleaning
[2025-11-25 22:18:02] 2025-11-25 21:18:01,923 [wrapper] apfmon messages muted
[2025-11-25 22:18:02] 2025-11-25 21:18:01,925 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:18:02] 2025-11-25 21:18:01,928 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:18:02]  *** Error codes and diagnostics ***
[2025-11-25 22:18:02]     "exeErrorCode": 65,
[2025-11-25 22:18:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 22:18:02]     "pilotErrorCode": 1305,
[2025-11-25 22:18:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 22:18:02]  *** Listing of results directory ***
[2025-11-25 22:18:02] total 402848
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc    576529 Nov 25 01:10 pilot3.tar.gz
[2025-11-25 22:18:02] -rwx------ 1 boinc boinc     36292 Nov 25 02:03 runpilot2-wrapper.sh
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc      5112 Nov 25 02:03 queuedata.json
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc       100 Nov 25 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:18:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 22:13 run_atlas
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc       105 Nov 25 22:13 job.xml
[2025-11-25 22:18:02] -rw-r--r-- 2 boinc boinc 408322537 Nov 25 22:13 EVNT.47483658._001467.pool.root.1
[2025-11-25 22:18:02] -rw-r--r-- 2 boinc boinc    590100 Nov 25 22:13 input.tar.gz
[2025-11-25 22:18:02] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:13 start_atlas.sh
[2025-11-25 22:18:02] drwxrwx--x 2 boinc boinc      4096 Nov 25 22:13 shared
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:13 boinc_setup_complete
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc      6196 Nov 25 22:13 init_data.xml
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc         0 Nov 25 22:13 boinc_lockfile
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc      2785 Nov 25 22:13 pandaJob.out
[2025-11-25 22:18:02] -rw------- 1 boinc boinc    991893 Nov 25 22:13 agis_schedconf.cvmfs.json
[2025-11-25 22:18:02] -rw------- 1 boinc boinc   1516240 Nov 25 22:13 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:18:02] drwx------ 5 boinc boinc      4096 Nov 25 22:13 pilot3
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc       522 Nov 25 22:14 boinc_task_state.xml
[2025-11-25 22:18:02] -rw------- 1 boinc boinc       973 Nov 25 22:15 memory_monitor_summary.json
[2025-11-25 22:18:02] -rw------- 1 boinc boinc     55636 Nov 25 22:15 log.47556149._004533.job.log.tgz.1
[2025-11-25 22:18:02] -rw------- 1 boinc boinc        95 Nov 25 22:16 pilot_heartbeat.json
[2025-11-25 22:18:02] -rw------- 1 boinc boinc      8400 Nov 25 22:17 heartbeat.json
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc      8192 Nov 25 22:17 boinc_mmap_file
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc        22 Nov 25 22:17 wrapper_checkpoint.txt
[2025-11-25 22:18:02] -rw------- 1 boinc boinc      4752 Nov 25 22:18 pilotlog.txt
[2025-11-25 22:18:02] -rw------- 1 boinc boinc     93452 Nov 25 22:18 log.47556149._004533.job.log.1
[2025-11-25 22:18:02] -rw------- 1 boinc boinc       186 Nov 25 22:18 output.list
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc       620 Nov 25 22:18 runtime_log
[2025-11-25 22:18:02] -rw------- 1 boinc boinc    163840 Nov 25 22:18 result.tar.gz
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc      8744 Nov 25 22:18 runtime_log.err
[2025-11-25 22:18:02] -rw------- 1 boinc boinc       649 Nov 25 22:18 6XYKDmAewh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr1LKDmogFJpm.diag
[2025-11-25 22:18:02] -rw-r--r-- 1 boinc boinc      8334 Nov 25 22:18 stderr.txt
[2025-11-25 22:18:03] No HITS result produced
[2025-11-25 22:18:03]  *** Contents of shared directory: ***
[2025-11-25 22:18:03] total 399516
[2025-11-25 22:18:03] -rw-r--r-- 2 boinc boinc 408322537 Nov 25 22:13 ATLAS.root_0
[2025-11-25 22:18:03] -rw-r--r-- 2 boinc boinc    590100 Nov 25 22:13 input.tar.gz
[2025-11-25 22:18:03] -rw-r--r-- 2 boinc boinc     15847 Nov 25 22:13 start_atlas.sh
[2025-11-25 22:18:03] -rw------- 1 boinc boinc    163840 Nov 25 22:18 result.tar.gz
22:18:04 (1642206): run_atlas exited; CPU time 31.948788
22:18:04 (1642206): called boinc_finish(0)

</stderr_txt>
]]>

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