Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:45:03 (2251927): wrapper (7.7.26015): starting
03:45:03 (2251927): wrapper: running run_atlas (--nthreads 12)
[2025-11-26 03:45:03] Arguments: --nthreads 12
[2025-11-26 03:45:03] Threads: 12
[2025-11-26 03:45:03] Checking for CVMFS
[2025-11-26 03:45:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 03:45:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 03:45:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 03:45:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 03:45:04] 2.13.3.0 13543 6439 91216 153305 3 81 2187401 4097025 1044 130560 0 5011517 99.934 537176 18486 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-11-26 03:45:04] CVMFS is ok
[2025-11-26 03:45:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 03:45:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 03:45:04] Further information can be found at the LHC@home message board.
[2025-11-26 03:45:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 03:45:04] Checking for apptainer binary...
[2025-11-26 03:45:04] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-11-26 03:45:04] apptainer is not installed, using version from CVMFS
[2025-11-26 03:45:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 03:45:04] pckelar5.cern.ch
[2025-11-26 03:45:04] apptainer works
[2025-11-26 03:45:04] Set ATHENA_PROC_NUMBER=12
[2025-11-26 03:45:04] Set ATHENA_CORE_NUMBER=12
[2025-11-26 03:45:04] Starting ATLAS job with PandaID=6896296881
[2025-11-26 03:45:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 15:47:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 15:47:55] 2025-11-26 14:47:21,431 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 15:47:55] 2025-11-26 14:47:21,436 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2833.4881666666674
[2025-11-26 15:47:55] 2025-11-26 14:47:21,442 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6896296881/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,442 | INFO     | extracted standard info from prmon json
[2025-11-26 15:47:55] 2025-11-26 14:47:21,443 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 15:47:55] 2025-11-26 14:47:21,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 15:47:55] 2025-11-26 14:47:21,463 | INFO     | fitting pss+swap vs Time
[2025-11-26 15:47:55] 2025-11-26 14:47:21,464 | INFO     | sum of square deviations: 110981738345.1392
[2025-11-26 15:47:55] 2025-11-26 14:47:21,481 | INFO     | sum of deviations: 1478845630465.7556
[2025-11-26 15:47:55] 2025-11-26 14:47:21,481 | INFO     | mean x: 1764146771.4774647
[2025-11-26 15:47:55] 2025-11-26 14:47:21,481 | INFO     | mean y: 3533041.7971830987
[2025-11-26 15:47:55] 2025-11-26 14:47:21,481 | INFO     | intersect: -23503944705.45495
[2025-11-26 15:47:55] 2025-11-26 14:47:21,482 | INFO     | chi2: 5.518505804898567
[2025-11-26 15:47:55] 2025-11-26 14:47:21,484 | INFO     | sum of square deviations: 108653729612.82834
[2025-11-26 15:47:55] 2025-11-26 14:47:21,500 | INFO     | sum of deviations: 1734668210625.2866
[2025-11-26 15:47:55] 2025-11-26 14:47:21,500 | INFO     | mean x: 1764146618.9843972
[2025-11-26 15:47:55] 2025-11-26 14:47:21,500 | INFO     | mean y: 3549787.5716312057
[2025-11-26 15:47:55] 2025-11-26 14:47:21,501 | INFO     | intersect: -28161236361.40752
[2025-11-26 15:47:55] 2025-11-26 14:47:21,502 | INFO     | chi2: 2.929541487812327
[2025-11-26 15:47:55] 2025-11-26 14:47:21,502 | INFO     | current chi2=2.929541487812327 (change=46.914226579015555 %)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,503 | INFO     | sum of square deviations: 106358512192.94855
[2025-11-26 15:47:55] 2025-11-26 14:47:21,519 | INFO     | sum of deviations: 1801317757875.818
[2025-11-26 15:47:55] 2025-11-26 14:47:21,519 | INFO     | mean x: 1764146466.4914286
[2025-11-26 15:47:55] 2025-11-26 14:47:21,520 | INFO     | mean y: 3554202.802857143
[2025-11-26 15:47:55] 2025-11-26 14:47:21,520 | INFO     | intersect: -29874527880.744488
[2025-11-26 15:47:55] 2025-11-26 14:47:21,521 | INFO     | chi2: 2.551553220245754
[2025-11-26 15:47:55] 2025-11-26 14:47:21,521 | INFO     | current chi2=2.551553220245754 (change=12.902642585507152 %)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,521 | INFO     | right removable region: 699
[2025-11-26 15:47:55] 2025-11-26 14:47:21,522 | INFO     | sum of square deviations: 108653349339.79587
[2025-11-26 15:47:55] 2025-11-26 14:47:21,531 | INFO     | time since job start (43327s) is within the limit (172800.0s)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,539 | INFO     | sum of deviations: 1229303282329.7698
[2025-11-26 15:47:55] 2025-11-26 14:47:21,540 | INFO     | mean x: 1764146923.9829788
[2025-11-26 15:47:55] 2025-11-26 14:47:21,540 | INFO     | mean y: 3549360.1475177305
[2025-11-26 15:47:55] 2025-11-26 14:47:21,540 | INFO     | intersect: -19955997375.79406
[2025-11-26 15:47:55] 2025-11-26 14:47:21,541 | INFO     | chi2: 3.1706273045286197
[2025-11-26 15:47:55] 2025-11-26 14:47:21,541 | INFO     | current chi2=3.1706273045286197 (change=42.54554735243415 %)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,543 | INFO     | sum of square deviations: 106357923914.79419
[2025-11-26 15:47:55] 2025-11-26 14:47:21,559 | INFO     | sum of deviations: 1162545314488.3342
[2025-11-26 15:47:55] 2025-11-26 14:47:21,559 | INFO     | mean x: 1764147076.4828572
[2025-11-26 15:47:55] 2025-11-26 14:47:21,559 | INFO     | mean y: 3553793.152857143
[2025-11-26 15:47:55] 2025-11-26 14:47:21,559 | INFO     | intersect: -19279456276.472637
[2025-11-26 15:47:55] 2025-11-26 14:47:21,560 | INFO     | chi2: 3.1113019162821116
[2025-11-26 15:47:55] 2025-11-26 14:47:21,561 | INFO     | current chi2=3.1113019162821116 (change=1.8710930850110779 %)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,561 | INFO     | left removable region: 20
[2025-11-26 15:47:55] 2025-11-26 14:47:21,562 | INFO     | sum of square deviations: 97070375187.99437
[2025-11-26 15:47:55] 2025-11-26 14:47:21,578 | INFO     | sum of deviations: 1401858443105.379
[2025-11-26 15:47:55] 2025-11-26 14:47:21,578 | INFO     | mean x: 1764147045.9970546
[2025-11-26 15:47:55] 2025-11-26 14:47:21,578 | INFO     | mean y: 3581227.1885125185
[2025-11-26 15:47:55] 2025-11-26 14:47:21,579 | INFO     | intersect: -25473650384.627224
[2025-11-26 15:47:55] 2025-11-26 14:47:21,580 | INFO     | chi2: 0.11144347742530739
[2025-11-26 15:47:55] 2025-11-26 14:47:21,580 | INFO     | current memory leak: 14.44 B/s (using 679 data points, chi2=0.11)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,581 | INFO     | could have reported an average CPU frequency of 2802 MHz (27 samples)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,581 | INFO     | ..............................
[2025-11-26 15:47:55] 2025-11-26 14:47:21,581 | INFO     | . Timing measurements:
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . get job = 0 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . initial setup = 1 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . payload setup = 8 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . stage-in = 0 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . payload execution = 43288 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . stage-out = 1 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,582 | INFO     | . log creation = 0 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,583 | INFO     | ..............................
[2025-11-26 15:47:55] 2025-11-26 14:47:21,742 | INFO     | 
[2025-11-26 15:47:55] 2025-11-26 14:47:21,743 | INFO     | job summary report
[2025-11-26 15:47:55] 2025-11-26 14:47:21,743 | INFO     | --------------------------------------------------
[2025-11-26 15:47:55] 2025-11-26 14:47:21,743 | INFO     | PanDA job id: 6896296881
[2025-11-26 15:47:55] 2025-11-26 14:47:21,743 | INFO     | task id: 47556149
[2025-11-26 15:47:55] 2025-11-26 14:47:21,743 | INFO     | errors: (none)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,744 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 15:47:55] 2025-11-26 14:47:21,744 | INFO     | pilot state: finished 
[2025-11-26 15:47:55] 2025-11-26 14:47:21,744 | INFO     | transexitcode: 0
[2025-11-26 15:47:55] 2025-11-26 14:47:21,744 | INFO     | exeerrorcode: 0
[2025-11-26 15:47:55] 2025-11-26 14:47:21,744 | INFO     | exeerrordiag: 
[2025-11-26 15:47:55] 2025-11-26 14:47:21,744 | INFO     | exitcode: 0
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | exitmsg: OK
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | cpuconsumptiontime: 505995 s
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | nevents: 1000
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | neventsw: 0
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | pid: 2263303
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | pgrp: 2263303
[2025-11-26 15:47:55] 2025-11-26 14:47:21,745 | INFO     | corecount: 12
[2025-11-26 15:47:55] 2025-11-26 14:47:21,746 | INFO     | event service: False
[2025-11-26 15:47:55] 2025-11-26 14:47:21,746 | INFO     | sizes: {0: 2284201, 1: 2284343, 6: 2284605, 12: 2284633, 43301: 2328691, 43304: 2337869, 43310: 2338059}
[2025-11-26 15:47:55] 2025-11-26 14:47:21,746 | INFO     | --------------------------------------------------
[2025-11-26 15:47:55] 2025-11-26 14:47:21,746 | INFO     | 
[2025-11-26 15:47:55] 2025-11-26 14:47:21,746 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-26 15:47:55] 2025-11-26 14:47:21,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,767 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,769 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,769 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 15:47:55] 2025-11-26 14:47:21,769 | INFO     | job 6896296881 has completed (purged errors)
[2025-11-26 15:47:55] 2025-11-26 14:47:21,770 | INFO     | overall cleanup function is called
[2025-11-26 15:47:55] 2025-11-26 14:47:22,789 | INFO     | --- collectZombieJob: --- 10, [2263303]
[2025-11-26 15:47:55] 2025-11-26 14:47:22,789 | INFO     | zombie collector waiting for pid 2263303
[2025-11-26 15:47:55] 2025-11-26 14:47:22,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 15:47:55] 2025-11-26 14:47:22,790 | INFO     | collected zombie processes
[2025-11-26 15:47:55] 2025-11-26 14:47:22,790 | INFO     | will attempt to kill all subprocesses of pid=2263303
[2025-11-26 15:47:55] 2025-11-26 14:47:22,991 | INFO     | process IDs to be killed: [2263303] (in reverse order)
[2025-11-26 15:47:55] 2025-11-26 14:47:23,055 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 15:47:55] 2025-11-26 14:47:23,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 15:47:55] 2025-11-26 14:47:23,063 | INFO     | did not find any defunct processes belonging to 2263303
[2025-11-26 15:47:55] 2025-11-26 14:47:23,070 | INFO     | did not find any defunct processes belonging to 2263303
[2025-11-26 15:47:55] 2025-11-26 14:47:23,071 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 15:47:55] 2025-11-26 14:47:23,071 | INFO     | ready for new job
[2025-11-26 15:47:55] 2025-11-26 14:47:23,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 15:47:55] 2025-11-26 14:47:23,074 | INFO     | ***************************************
[2025-11-26 15:47:55] 2025-11-26 14:47:23,075 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 15:47:55] 2025-11-26 14:47:23,075 | INFO     | ***************************************
[2025-11-26 15:47:55] 2025-11-26 14:47:23,075 | INFO     | 
[2025-11-26 15:47:55] 2025-11-26 14:47:23,076 | INFO     | architecture information:
[2025-11-26 15:47:55] 2025-11-26 14:47:23,077 | INFO     | executing command: cat /etc/os-release
[2025-11-26 15:47:55] 2025-11-26 14:47:23,092 | INFO     | cat /etc/os-release:
[2025-11-26 15:47:55] NAME="CentOS Linux"
[2025-11-26 15:47:55] VERSION="7 (Core)"
[2025-11-26 15:47:55] ID="centos"
[2025-11-26 15:47:55] ID_LIKE="rhel fedora"
[2025-11-26 15:47:55] VERSION_ID="7"
[2025-11-26 15:47:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 15:47:55] ANSI_COLOR="0;31"
[2025-11-26 15:47:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 15:47:55] HOME_URL="https://www.centos.org/"
[2025-11-26 15:47:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 15:47:55] 
[2025-11-26 15:47:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 15:47:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 15:47:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 15:47:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 15:47:55] 
[2025-11-26 15:47:55] 2025-11-26 14:47:23,092 | INFO     | ***************************************
[2025-11-26 15:47:55] 2025-11-26 14:47:23,595 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-26 15:47:55] 2025-11-26 14:47:23,612 | INFO     | sufficient remaining disk space (1815373414400 B)
[2025-11-26 15:47:55] 2025-11-26 14:47:23,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 15:47:55] 2025-11-26 14:47:23,612 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 15:47:55] 2025-11-26 14:47:23,613 | INFO     | update_server=False
[2025-11-26 15:47:55] 2025-11-26 14:47:23,613 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 15:47:55] 2025-11-26 14:47:23,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:47:55] 2025-11-26 14:47:23,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 15:47:55] 2025-11-26 14:47:24,086 | INFO     | all payload control threads have been joined
[2025-11-26 15:47:55] 2025-11-26 14:47:24,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 15:47:55] 2025-11-26 14:47:24,087 | INFO     | aborting loop
[2025-11-26 15:47:55] 2025-11-26 14:47:24,484 | INFO     | all data control threads have been joined
[2025-11-26 15:47:55] 2025-11-26 14:47:24,618 | INFO     | [job] retrieve thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:24,619 | INFO     | [job] queue monitor thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,073 | INFO     | all job control threads have been joined
[2025-11-26 15:47:55] 2025-11-26 14:47:25,088 | INFO     | [job] job monitor thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,092 | INFO     | [payload] control thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,131 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,137 | INFO     | [payload] failed_post thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,490 | INFO     | [data] control thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,619 | INFO     | [data] copytool_out thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,625 | INFO     | [data] copytool_in thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:25,882 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:26,067 | INFO     | [job] validate thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:26,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 15:47:55] 2025-11-26 14:47:26,078 | INFO     | [job] control thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:26,085 | INFO     | [payload] validate_post thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:26,103 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:27,279 | INFO     | [monitor] cgroup control has ended
[2025-11-26 15:47:55] 2025-11-26 14:47:30,077 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 15:47:55] 2025-11-26 14:47:30,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140199086065472)>', '<ExcThread(monitor, started 140198318954240)>']
[2025-11-26 15:47:55] 2025-11-26 14:47:35,420 | INFO     | all workflow threads have been joined
[2025-11-26 15:47:55] 2025-11-26 14:47:35,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 15:47:55] 2025-11-26 14:47:35,420 | INFO     | traces error code: 0
[2025-11-26 15:47:55] 2025-11-26 14:47:35,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 15:47:55] 2025-11-26 14:47:53,601 | INFO     | 43330s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 15:47:55] 2025-11-26 14:47:54,848 | INFO     | PID=2255792 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 15:47:55] 2025-11-26 14:47:54,848 | INFO     | .. there are 2 such processes running
[2025-11-26 15:47:55] 2025-11-26 14:47:54,848 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 15:47:55] 2025-11-26 14:47:54,849 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 15:47:55] 2025-11-26 14:47:54,849 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 15:47:55] 2025-11-26 14:47:54,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 15:47:55] 2025-11-26 14:47:54,849 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 15:47:55] 2025-11-26 14:47:54,849 | INFO     | [monitor] control thread has ended
[2025-11-26 15:47:55] 2025-11-26 14:47:54,959 [wrapper] ==== pilot stdout END ====
[2025-11-26 15:47:55] 2025-11-26 14:47:54,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 15:47:55] 2025-11-26 14:47:54,965 [wrapper] pilotpid: 2255792
[2025-11-26 15:47:55] 2025-11-26 14:47:54,967 [wrapper] Pilot exit status: 0
[2025-11-26 15:47:55] 2025-11-26 14:47:54,977 [wrapper] pandaids: 6896296881
[2025-11-26 15:47:55] 2025-11-26 14:47:55,014 [wrapper] cleanup supervisor_pilot 2500905 2255793
[2025-11-26 15:47:55] 2025-11-26 14:47:55,017 [wrapper] Test setup, not cleaning
[2025-11-26 15:47:55] 2025-11-26 14:47:55,019 [wrapper] apfmon messages muted
[2025-11-26 15:47:55] 2025-11-26 14:47:55,022 [wrapper] ==== wrapper stdout END ====
[2025-11-26 15:47:55] 2025-11-26 14:47:55,024 [wrapper] ==== wrapper stderr END ====
[2025-11-26 15:47:55]  *** Error codes and diagnostics ***
[2025-11-26 15:47:55]     "exeErrorCode": 0,
[2025-11-26 15:47:55]     "exeErrorDiag": "",
[2025-11-26 15:47:55]     "pilotErrorCode": 0,
[2025-11-26 15:47:55]     "pilotErrorDiag": "",
[2025-11-26 15:47:55]  *** Listing of results directory ***
[2025-11-26 15:47:55] total 1310836
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc    576529 Nov 25 01:10 pilot3.tar.gz
[2025-11-26 15:47:55] -rwx------ 1 boinc boinc     36292 Nov 25 01:35 runpilot2-wrapper.sh
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc      5112 Nov 25 01:35 queuedata.json
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc       100 Nov 26 03:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 15:47:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 03:45 run_atlas
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc       105 Nov 26 03:45 job.xml
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc      6296 Nov 26 03:45 init_data.xml
[2025-11-26 15:47:55] -rw-r--r-- 2 boinc boinc 410470360 Nov 26 03:45 EVNT.47483658._001455.pool.root.1
[2025-11-26 15:47:55] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:45 start_atlas.sh
[2025-11-26 15:47:55] drwxrwx--x 2 boinc boinc        68 Nov 26 03:45 shared
[2025-11-26 15:47:55] -rw-r--r-- 2 boinc boinc    590104 Nov 26 03:45 input.tar.gz
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc         0 Nov 26 03:45 boinc_lockfile
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc      2786 Nov 26 03:45 pandaJob.out
[2025-11-26 15:47:55] -rw------- 1 boinc boinc    991877 Nov 26 03:45 agis_schedconf.cvmfs.json
[2025-11-26 15:47:55] drwx------ 5 boinc boinc      4096 Nov 26 03:45 pilot3
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc       533 Nov 26 15:36 boinc_task_state.xml
[2025-11-26 15:47:55] -rw------- 1 boinc boinc 911169465 Nov 26 15:46 HITS.47556149._004416.pool.root.1
[2025-11-26 15:47:55] -rw------- 1 boinc boinc      1036 Nov 26 15:47 memory_monitor_summary.json
[2025-11-26 15:47:55] -rw------- 1 boinc boinc   1516240 Nov 26 15:47 agis_ddmendpoints.agis.ALL.json
[2025-11-26 15:47:55] -rw------- 1 boinc boinc   2402460 Nov 26 15:47 log.47556149._004416.job.log.tgz.1
[2025-11-26 15:47:55] -rw------- 1 boinc boinc        95 Nov 26 15:47 pilot_heartbeat.json
[2025-11-26 15:47:55] -rw------- 1 boinc boinc      8612 Nov 26 15:47 heartbeat.json
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc      8192 Nov 26 15:47 boinc_mmap_file
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc        29 Nov 26 15:47 wrapper_checkpoint.txt
[2025-11-26 15:47:55] -rw------- 1 boinc boinc      1008 Nov 26 15:47 pilotlog.txt
[2025-11-26 15:47:55] -rw------- 1 boinc boinc   5979553 Nov 26 15:47 log.47556149._004416.job.log.1
[2025-11-26 15:47:55] -rw------- 1 boinc boinc       353 Nov 26 15:47 output.list
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc       620 Nov 26 15:47 runtime_log
[2025-11-26 15:47:55] -rw------- 1 boinc boinc   8396800 Nov 26 15:47 result.tar.gz
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc      8842 Nov 26 15:47 runtime_log.err
[2025-11-26 15:47:55] -rw------- 1 boinc boinc       665 Nov 26 15:47 59mMDmADwh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk0LKDmNQjhIn.diag
[2025-11-26 15:47:55] -rw-r--r-- 1 boinc boinc     21402 Nov 26 15:47 stderr.txt
[2025-11-26 15:47:55] HITS file was successfully produced:
[2025-11-26 15:47:55] -rw------- 1 boinc boinc 911169465 Nov 26 15:46 shared/HITS.pool.root.1
[2025-11-26 15:47:55]  *** Contents of shared directory: ***
[2025-11-26 15:47:55] total 1299464
[2025-11-26 15:47:55] -rw-r--r-- 2 boinc boinc 410470360 Nov 26 03:45 ATLAS.root_0
[2025-11-26 15:47:55] -rw-r--r-- 2 boinc boinc     15847 Nov 26 03:45 start_atlas.sh
[2025-11-26 15:47:55] -rw-r--r-- 2 boinc boinc    590104 Nov 26 03:45 input.tar.gz
[2025-11-26 15:47:55] -rw------- 1 boinc boinc 911169465 Nov 26 15:46 HITS.pool.root.1
[2025-11-26 15:47:55] -rw------- 1 boinc boinc   8396800 Nov 26 15:47 result.tar.gz
15:47:57 (2251927): run_atlas exited; CPU time 506296.667436
15:47:57 (2251927): called boinc_finish(0)

</stderr_txt>
]]>

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