Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:56:07 (1558967): wrapper (7.7.26015): starting
21:56:07 (1558967): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 21:56:07] Arguments: --nthreads 3
[2025-11-25 21:56:07] Threads: 3
[2025-11-25 21:56:07] Checking for CVMFS
[2025-11-25 21:56:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:56:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:56:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:56:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:56:07] 2.9.2.0 1308651 53 60544 153297 2 88 35349237 36864001 0 130560 0 751295 99.998 4060 3841 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 21:56:07] CVMFS is ok
[2025-11-25 21:56:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:56:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:56:07] Further information can be found at the LHC@home message board.
[2025-11-25 21:56:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:56:07] Checking for apptainer binary...
[2025-11-25 21:56:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:56:07] Running /usr/bin/apptainer --version
[2025-11-25 21:56:07] apptainer version 1.4.1-1.1
[2025-11-25 21:56:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:56:07] thA335
[2025-11-25 21:56:07] apptainer works
[2025-11-25 21:56:07] Set ATHENA_PROC_NUMBER=3
[2025-11-25 21:56:07] Set ATHENA_CORE_NUMBER=3
[2025-11-25 21:56:07] Starting ATLAS job with PandaID=6896296774
[2025-11-25 21:56:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:00:26]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:00:26] 2025-11-25 20:59:35,102 | INFO     | update_server=False
[2025-11-25 22:00:26] 2025-11-25 20:59:35,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:00:26] 2025-11-25 20:59:35,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:00:26] 2025-11-25 20:59:35,102 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:00:26] 2025-11-25 20:59:35,259 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 22:00:26] 2025-11-25 20:59:35,259 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 22:00:26] 2025-11-25 20:59:35,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:00:26] 2025-11-25 20:59:35,260 | INFO     | will abort loop
[2025-11-25 22:00:26] 2025-11-25 20:59:35,508 | INFO     | all data control threads have been joined
[2025-11-25 22:00:26] 2025-11-25 20:59:35,804 | INFO     | all payload control threads have been joined
[2025-11-25 22:00:26] 2025-11-25 20:59:36,107 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,108 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,245 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,265 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,401 | INFO     | all job control threads have been joined
[2025-11-25 22:00:26] 2025-11-25 20:59:36,429 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,513 | INFO     | [data] control thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,637 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,665 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,793 | INFO     | [job] validate thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,810 | INFO     | [payload] control thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,875 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:36,939 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:37,108 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:37,256 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:37,407 | INFO     | [job] control thread has finished
[2025-11-25 22:00:26] 2025-11-25 20:59:37,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:00:26] 2025-11-25 20:59:41,499 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:00:26] 2025-11-25 21:00:04,963 | INFO     | PID=1562697 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 22:00:26] 2025-11-25 21:00:04,963 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:00:26] 2025-11-25 21:00:04,963 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:00:26] 2025-11-25 21:00:04,963 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:00:26] 2025-11-25 21:00:20,019 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:00:26] 2025-11-25 21:00:21,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075454670656)>', '<ExcThread(monitor, started 140074947684096)>']
[2025-11-25 22:00:26] 2025-11-25 21:00:22,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:00:26] 2025-11-25 21:00:22,054 | INFO     | [monitor] control thread has ended
[2025-11-25 22:00:26] 2025-11-25 21:00:26,377 | INFO     | all workflow threads have been joined
[2025-11-25 22:00:26] 2025-11-25 21:00:26,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:00:26] 2025-11-25 21:00:26,378 | INFO     | traces error code: 0
[2025-11-25 22:00:26] 2025-11-25 21:00:26,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:00:26] 2025-11-25 21:00:26,424 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:00:26] 2025-11-25 21:00:26,427 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:00:26] 2025-11-25 21:00:26,430 [wrapper] pilotpid: 1562697
[2025-11-25 22:00:26] 2025-11-25 21:00:26,432 [wrapper] Pilot exit status: 0
[2025-11-25 22:00:26] 2025-11-25 21:00:26,439 [wrapper] pandaids: 6896296774
[2025-11-25 22:00:26] 2025-11-25 21:00:26,454 [wrapper] cleanup supervisor_pilot 1562703 1562698
[2025-11-25 22:00:26] 2025-11-25 21:00:26,457 [wrapper] Test setup, not cleaning
[2025-11-25 22:00:26] 2025-11-25 21:00:26,460 [wrapper] apfmon messages muted
[2025-11-25 22:00:26] 2025-11-25 21:00:26,462 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:00:26] 2025-11-25 21:00:26,465 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:00:26]  *** Error codes and diagnostics ***
[2025-11-25 22:00:26]     "exeErrorCode": 65,
[2025-11-25 22:00:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 22:00:26]     "pilotErrorCode": 1305,
[2025-11-25 22:00:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 22:00:26]  *** Listing of results directory ***
[2025-11-25 22:00:26] total 407252
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc    576529 Nov 25 01:10 pilot3.tar.gz
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc      5112 Nov 25 01:16 queuedata.json
[2025-11-25 22:00:26] -rwx------ 1 boinc boinc     36292 Nov 25 01:20 runpilot2-wrapper.sh
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc       100 Nov 25 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:00:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 21:56 run_atlas
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc       105 Nov 25 21:56 job.xml
[2025-11-25 22:00:26] -rw-r--r-- 2 boinc boinc 412835918 Nov 25 21:56 EVNT.47483658._001450.pool.root.1
[2025-11-25 22:00:26] -rw-r--r-- 2 boinc boinc    590111 Nov 25 21:56 input.tar.gz
[2025-11-25 22:00:26] -rw-r--r-- 2 boinc boinc     15847 Nov 25 21:56 start_atlas.sh
[2025-11-25 22:00:26] drwxrwx--x 2 boinc boinc      4096 Nov 25 21:56 shared
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc         0 Nov 25 21:56 boinc_setup_complete
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc      6196 Nov 25 21:56 init_data.xml
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc         0 Nov 25 21:56 boinc_lockfile
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc      2785 Nov 25 21:56 pandaJob.out
[2025-11-25 22:00:26] -rw------- 1 boinc boinc    991893 Nov 25 21:56 agis_schedconf.cvmfs.json
[2025-11-25 22:00:26] -rw------- 1 boinc boinc   1516240 Nov 25 21:56 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:00:26] drwx------ 5 boinc boinc      4096 Nov 25 21:56 pilot3
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc       523 Nov 25 21:57 boinc_task_state.xml
[2025-11-25 22:00:26] -rw------- 1 boinc boinc       947 Nov 25 21:57 memory_monitor_summary.json
[2025-11-25 22:00:26] -rw------- 1 boinc boinc     55658 Nov 25 21:57 log.47556149._004370.job.log.tgz.1
[2025-11-25 22:00:26] -rw------- 1 boinc boinc        95 Nov 25 21:59 pilot_heartbeat.json
[2025-11-25 22:00:26] -rw------- 1 boinc boinc      8402 Nov 25 21:59 heartbeat.json
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc      8192 Nov 25 22:00 boinc_mmap_file
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc        23 Nov 25 22:00 wrapper_checkpoint.txt
[2025-11-25 22:00:26] -rw------- 1 boinc boinc      4938 Nov 25 22:00 pilotlog.txt
[2025-11-25 22:00:26] -rw------- 1 boinc boinc     93641 Nov 25 22:00 log.47556149._004370.job.log.1
[2025-11-25 22:00:26] -rw------- 1 boinc boinc       186 Nov 25 22:00 output.list
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc       620 Nov 25 22:00 runtime_log
[2025-11-25 22:00:26] -rw------- 1 boinc boinc    163840 Nov 25 22:00 result.tar.gz
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc      8744 Nov 25 22:00 runtime_log.err
[2025-11-25 22:00:26] -rw------- 1 boinc boinc       649 Nov 25 22:00 gs2MDmxxvh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHFJKDmN3QpOm.diag
[2025-11-25 22:00:26] -rw-r--r-- 1 boinc boinc      8016 Nov 25 22:00 stderr.txt
[2025-11-25 22:00:26] No HITS result produced
[2025-11-25 22:00:26]  *** Contents of shared directory: ***
[2025-11-25 22:00:26] total 403924
[2025-11-25 22:00:26] -rw-r--r-- 2 boinc boinc 412835918 Nov 25 21:56 ATLAS.root_0
[2025-11-25 22:00:26] -rw-r--r-- 2 boinc boinc    590111 Nov 25 21:56 input.tar.gz
[2025-11-25 22:00:26] -rw-r--r-- 2 boinc boinc     15847 Nov 25 21:56 start_atlas.sh
[2025-11-25 22:00:26] -rw------- 1 boinc boinc    163840 Nov 25 22:00 result.tar.gz
22:00:27 (1558967): run_atlas exited; CPU time 31.759047
22:00:27 (1558967): called boinc_finish(0)

</stderr_txt>
]]>

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