Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:49:06 (5956): wrapper (7.7.26015): starting
15:49:06 (5956): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 15:49:06] Arguments: --nthreads 12
[2025-11-25 15:49:06] Threads: 12
[2025-11-25 15:49:06] Checking for CVMFS
[2025-11-25 15:49:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:49:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:49:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:49:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:49:06] 2.11.2.0 2924 286696 101572 153297 1 81 16753847 20275200 1 130560 4 130851849 99.966 17326818 14059 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 15:49:06] CVMFS is ok
[2025-11-25 15:49:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:49:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:49:06] Further information can be found at the LHC@home message board.
[2025-11-25 15:49:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:49:06] Checking for apptainer binary...
[2025-11-25 15:49:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:49:06] Running /usr/bin/apptainer --version
[2025-11-25 15:49:06] apptainer version 1.3.2-1.el7
[2025-11-25 15:49:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:49:08] c-205-28.aglt2.org
[2025-11-25 15:49:08] apptainer works
[2025-11-25 15:49:08] Set ATHENA_PROC_NUMBER=12
[2025-11-25 15:49:08] Set ATHENA_CORE_NUMBER=12
[2025-11-25 15:49:08] Starting ATLAS job with PandaID=6893852894
[2025-11-25 15:49:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:06:13]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:06:13] 2025-11-26 04:05:38,928 | INFO     | monitor loop #1960: job 0:6893852894 is in state 'finished'
[2025-11-25 23:06:13] 2025-11-26 04:05:38,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:06:13] 2025-11-26 04:05:39,507 | INFO     | time since job start (26176s) is within the limit (172800.0s)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,707 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 23:06:13] 2025-11-26 04:05:40,711 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-25 23:06:13] 2025-11-26 04:05:40,713 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893852894/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,714 | INFO     | extracted standard info from prmon json
[2025-11-25 23:06:13] 2025-11-26 04:05:40,714 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:06:13] 2025-11-26 04:05:40,714 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:06:13] 2025-11-26 04:05:40,721 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:06:13] 2025-11-26 04:05:40,721 | INFO     | sum of square deviations: 24482142797.61301
[2025-11-25 23:06:13] 2025-11-26 04:05:40,725 | INFO     | sum of deviations: 394316795008.87683
[2025-11-25 23:06:13] 2025-11-26 04:05:40,725 | INFO     | mean x: 1764116846.2284381
[2025-11-25 23:06:13] 2025-11-26 04:05:40,726 | INFO     | mean y: 3430331.337995338
[2025-11-25 23:06:13] 2025-11-26 04:05:40,726 | INFO     | intersect: -28409969042.093807
[2025-11-25 23:06:13] 2025-11-26 04:05:40,726 | INFO     | chi2: 5.954879402616988
[2025-11-25 23:06:13] 2025-11-26 04:05:40,727 | INFO     | sum of square deviations: 23636091707.34905
[2025-11-25 23:06:13] 2025-11-26 04:05:40,731 | INFO     | sum of deviations: 573661458447.7363
[2025-11-25 23:06:13] 2025-11-26 04:05:40,731 | INFO     | mean x: 1764116693.731132
[2025-11-25 23:06:13] 2025-11-26 04:05:40,731 | INFO     | mean y: 3462627.216981132
[2025-11-25 23:06:13] 2025-11-26 04:05:40,731 | INFO     | intersect: -42812658071.92306
[2025-11-25 23:06:13] 2025-11-26 04:05:40,732 | INFO     | chi2: 2.3877035631545915
[2025-11-25 23:06:13] 2025-11-26 04:05:40,732 | INFO     | current chi2=2.3877035631545915 (change=59.903410267128685 %)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,732 | INFO     | sum of square deviations: 22809736052.544342
[2025-11-25 23:06:13] 2025-11-26 04:05:40,736 | INFO     | sum of deviations: 582609369973.7651
[2025-11-25 23:06:13] 2025-11-26 04:05:40,736 | INFO     | mean x: 1764116541.2315035
[2025-11-25 23:06:13] 2025-11-26 04:05:40,736 | INFO     | mean y: 3464245.260143198
[2025-11-25 23:06:13] 2025-11-26 04:05:40,736 | INFO     | intersect: -45055839566.040985
[2025-11-25 23:06:13] 2025-11-26 04:05:40,737 | INFO     | chi2: 2.240714401251603
[2025-11-25 23:06:13] 2025-11-26 04:05:40,737 | INFO     | current chi2=2.240714401251603 (change=6.156089230305831 %)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,737 | INFO     | right removable region: 418
[2025-11-25 23:06:13] 2025-11-26 04:05:40,737 | INFO     | sum of square deviations: 23636031927.349064
[2025-11-25 23:06:13] 2025-11-26 04:05:40,741 | INFO     | sum of deviations: 264179508243.8302
[2025-11-25 23:06:13] 2025-11-26 04:05:40,741 | INFO     | mean x: 1764116998.731132
[2025-11-25 23:06:13] 2025-11-26 04:05:40,741 | INFO     | mean y: 3453704.103773585
[2025-11-25 23:06:13] 2025-11-26 04:05:40,742 | INFO     | intersect: -19714050597.881737
[2025-11-25 23:06:13] 2025-11-26 04:05:40,742 | INFO     | chi2: 3.8752259024214997
[2025-11-25 23:06:13] 2025-11-26 04:05:40,742 | INFO     | current chi2=3.8752259024214997 (change=34.92352001757658 %)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,743 | INFO     | sum of square deviations: 22809642357.07881
[2025-11-25 23:06:13] 2025-11-26 04:05:40,746 | INFO     | sum of deviations: 231012346466.26483
[2025-11-25 23:06:13] 2025-11-26 04:05:40,747 | INFO     | mean x: 1764117151.2338903
[2025-11-25 23:06:13] 2025-11-26 04:05:40,747 | INFO     | mean y: 3459818.150357995
[2025-11-25 23:06:13] 2025-11-26 04:05:40,747 | INFO     | intersect: -17863231652.41751
[2025-11-25 23:06:13] 2025-11-26 04:05:40,747 | INFO     | chi2: 3.82601237050688
[2025-11-25 23:06:13] 2025-11-26 04:05:40,747 | INFO     | current chi2=3.82601237050688 (change=1.2699525951214343 %)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,747 | INFO     | left removable region: 20
[2025-11-25 23:06:13] 2025-11-26 04:05:40,748 | INFO     | sum of square deviations: 19549071726.824066
[2025-11-25 23:06:13] 2025-11-26 04:05:40,751 | INFO     | sum of deviations: 378212845165.34644
[2025-11-25 23:06:13] 2025-11-26 04:05:40,751 | INFO     | mean x: 1764117120.7386935
[2025-11-25 23:06:13] 2025-11-26 04:05:40,752 | INFO     | mean y: 3502546.243718593
[2025-11-25 23:06:13] 2025-11-26 04:05:40,752 | INFO     | intersect: -34126596558.35838
[2025-11-25 23:06:13] 2025-11-26 04:05:40,752 | INFO     | chi2: 0.056832578077326376
[2025-11-25 23:06:13] 2025-11-26 04:05:40,752 | INFO     | current memory leak: 19.35 B/s (using 398 data points, chi2=0.06)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | could have reported an average CPU frequency of 2394 MHz (18 samples)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | ..............................
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | . Timing measurements:
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | . get job = 0 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | . initial setup = 2 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | . payload setup = 7 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | . stage-in = 0 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,753 | INFO     | . payload execution = 26140 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,754 | INFO     | . stage-out = 3 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,754 | INFO     | . log creation = 0 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,754 | INFO     | ..............................
[2025-11-25 23:06:13] 2025-11-26 04:05:40,992 | INFO     | 
[2025-11-25 23:06:13] 2025-11-26 04:05:40,992 | INFO     | job summary report
[2025-11-25 23:06:13] 2025-11-26 04:05:40,992 | INFO     | --------------------------------------------------
[2025-11-25 23:06:13] 2025-11-26 04:05:40,992 | INFO     | PanDA job id: 6893852894
[2025-11-25 23:06:13] 2025-11-26 04:05:40,992 | INFO     | task id: 47523449
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | errors: (none)
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | pilot state: finished 
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | transexitcode: 0
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | exeerrorcode: 0
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | exeerrordiag: 
[2025-11-25 23:06:13] 2025-11-26 04:05:40,993 | INFO     | exitcode: 0
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | exitmsg: OK
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | cpuconsumptiontime: 301144 s
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | nevents: 1000
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | neventsw: 0
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | pid: 16012
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | pgrp: 16012
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | corecount: 12
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | event service: False
[2025-11-25 23:06:13] 2025-11-26 04:05:40,994 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 26151: 2321959, 26155: 2330953, 26156: 2331009, 26161: 2331383}
[2025-11-25 23:06:13] 2025-11-26 04:05:40,995 | INFO     | --------------------------------------------------
[2025-11-25 23:06:13] 2025-11-26 04:05:40,995 | INFO     | 
[2025-11-25 23:06:13] 2025-11-26 04:05:40,995 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 23:06:13] 2025-11-26 04:05:41,176 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,179 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,179 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,179 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,179 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,179 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:06:13] 2025-11-26 04:05:41,179 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,180 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:06:13] 2025-11-26 04:05:41,180 | INFO     | job 6893852894 has completed (purged errors)
[2025-11-25 23:06:13] 2025-11-26 04:05:41,180 | INFO     | overall cleanup function is called
[2025-11-25 23:06:13] 2025-11-26 04:05:42,195 | INFO     | --- collectZombieJob: --- 10, [16012]
[2025-11-25 23:06:13] 2025-11-26 04:05:42,195 | INFO     | zombie collector waiting for pid 16012
[2025-11-25 23:06:13] 2025-11-26 04:05:42,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:06:13] 2025-11-26 04:05:42,195 | INFO     | collected zombie processes
[2025-11-25 23:06:13] 2025-11-26 04:05:42,195 | INFO     | will attempt to kill all subprocesses of pid=16012
[2025-11-25 23:06:13] 2025-11-26 04:05:42,287 | INFO     | process IDs to be killed: [16012] (in reverse order)
[2025-11-25 23:06:13] 2025-11-26 04:05:42,338 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:06:13] 2025-11-26 04:05:42,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:06:13] 2025-11-26 04:05:42,343 | INFO     | did not find any defunct processes belonging to 16012
[2025-11-25 23:06:13] 2025-11-26 04:05:42,346 | INFO     | did not find any defunct processes belonging to 16012
[2025-11-25 23:06:13] 2025-11-26 04:05:42,348 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:06:13] 2025-11-26 04:05:42,348 | INFO     | ready for new job
[2025-11-25 23:06:13] 2025-11-26 04:05:42,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:06:13] 2025-11-26 04:05:42,350 | INFO     | ***************************************
[2025-11-25 23:06:13] 2025-11-26 04:05:42,351 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:06:13] 2025-11-26 04:05:42,351 | INFO     | ***************************************
[2025-11-25 23:06:13] 2025-11-26 04:05:42,351 | INFO     | 
[2025-11-25 23:06:13] 2025-11-26 04:05:42,351 | INFO     | architecture information:
[2025-11-25 23:06:13] 2025-11-26 04:05:42,352 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:06:13] 2025-11-26 04:05:42,367 | INFO     | cat /etc/os-release:
[2025-11-25 23:06:13] NAME="CentOS Linux"
[2025-11-25 23:06:13] VERSION="7 (Core)"
[2025-11-25 23:06:13] ID="centos"
[2025-11-25 23:06:13] ID_LIKE="rhel fedora"
[2025-11-25 23:06:13] VERSION_ID="7"
[2025-11-25 23:06:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:06:13] ANSI_COLOR="0;31"
[2025-11-25 23:06:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:06:13] HOME_URL="https://www.centos.org/"
[2025-11-25 23:06:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:06:13] 
[2025-11-25 23:06:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:06:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:06:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:06:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:06:13] 
[2025-11-25 23:06:13] 2025-11-26 04:05:42,367 | INFO     | ***************************************
[2025-11-25 23:06:13] 2025-11-26 04:05:42,870 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 23:06:13] 2025-11-26 04:05:42,886 | INFO     | sufficient remaining disk space (28236054528 B)
[2025-11-25 23:06:13] 2025-11-26 04:05:42,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:06:13] 2025-11-26 04:05:42,887 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:06:13] 2025-11-26 04:05:42,887 | INFO     | update_server=False
[2025-11-25 23:06:13] 2025-11-26 04:05:42,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:06:13] 2025-11-26 04:05:42,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:06:13] 2025-11-26 04:05:42,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:06:13] 2025-11-26 04:05:42,888 | INFO     | aborting loop
[2025-11-25 23:06:13] 2025-11-26 04:05:43,041 | INFO     | all job control threads have been joined
[2025-11-25 23:06:13] 2025-11-26 04:05:43,138 | INFO     | all data control threads have been joined
[2025-11-25 23:06:13] 2025-11-26 04:05:43,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:06:13] 2025-11-26 04:05:43,422 | INFO     | all payload control threads have been joined
[2025-11-25 23:06:13] 2025-11-26 04:05:43,890 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:43,894 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,031 | INFO     | [job] validate thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,046 | INFO     | [job] control thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,143 | INFO     | [data] control thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,427 | INFO     | [payload] control thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,429 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:44,474 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:45,047 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:45,067 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:45,295 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:45,331 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:45,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:06:13] 2025-11-26 04:05:46,851 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:46,894 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:05:53,333 | INFO     | job.realtimelogging is not enabled
[2025-11-25 23:06:13] 2025-11-26 04:05:54,338 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:06:13] 2025-11-26 04:06:05,555 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:06:13] 2025-11-26 04:06:07,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687462082368)>', '<ExcThread(monitor, started 139686295107328)>']
[2025-11-25 23:06:13] 2025-11-26 04:06:12,361 | INFO     | all workflow threads have been joined
[2025-11-25 23:06:13] 2025-11-26 04:06:12,368 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:06:13] 2025-11-26 04:06:12,369 | INFO     | traces error code: 0
[2025-11-25 23:06:13] 2025-11-26 04:06:12,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:06:13] 2025-11-26 04:06:12,711 | INFO     | PID=9629 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 23:06:13] 2025-11-26 04:06:12,711 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:06:13] 2025-11-26 04:06:12,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:06:13] 2025-11-26 04:06:12,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:06:13] 2025-11-26 04:06:12,712 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:06:13] 2025-11-26 04:06:12,712 | INFO     | [monitor] control thread has ended
[2025-11-25 23:06:13] 2025-11-26 04:06:12,794 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:06:13] 2025-11-26 04:06:12,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:06:13] 2025-11-26 04:06:12,801 [wrapper] pilotpid: 9629
[2025-11-25 23:06:13] 2025-11-26 04:06:12,805 [wrapper] Pilot exit status: 0
[2025-11-25 23:06:13] 2025-11-26 04:06:12,821 [wrapper] pandaids: 6893852894
[2025-11-25 23:06:13] 2025-11-26 04:06:12,862 [wrapper] cleanup supervisor_pilot 22040 9630
[2025-11-25 23:06:13] 2025-11-26 04:06:12,866 [wrapper] Test setup, not cleaning
[2025-11-25 23:06:13] 2025-11-26 04:06:12,870 [wrapper] apfmon messages muted
[2025-11-25 23:06:13] 2025-11-26 04:06:12,874 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:06:13] 2025-11-26 04:06:12,878 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:06:13]  *** Error codes and diagnostics ***
[2025-11-25 23:06:13]     "exeErrorCode": 0,
[2025-11-25 23:06:13]     "exeErrorDiag": "",
[2025-11-25 23:06:13]     "pilotErrorCode": 0,
[2025-11-25 23:06:13]     "pilotErrorDiag": "",
[2025-11-25 23:06:13]  *** Listing of results directory ***
[2025-11-25 23:06:13] total 1322476
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 07:07 pilot3.tar.gz
[2025-11-25 23:06:13] -rwx------ 1 boincer umatlas     36292 Nov 20 07:09 runpilot2-wrapper.sh
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 07:09 queuedata.json
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas       100 Nov 25 15:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:06:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 15:49 run_atlas
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas       105 Nov 25 15:49 job.xml
[2025-11-25 23:06:13] -rw-r--r-- 2 boincer umatlas 410871086 Nov 25 15:49 EVNT.47493127._000406.pool.root.1
[2025-11-25 23:06:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 15:49 start_atlas.sh
[2025-11-25 23:06:13] drwxrwx--x 2 boincer umatlas      4096 Nov 25 15:49 shared
[2025-11-25 23:06:13] -rw-r--r-- 2 boincer umatlas    590092 Nov 25 15:49 input.tar.gz
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas         0 Nov 25 15:49 boinc_lockfile
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 15:49 pandaJob.out
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas        57 Nov 25 15:49 setup.sh.local
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas    991893 Nov 25 15:49 agis_schedconf.cvmfs.json
[2025-11-25 23:06:13] drwx------ 5 boincer umatlas      4096 Nov 25 15:49 pilot3
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas       532 Nov 25 22:58 boinc_task_state.xml
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 23:04 init_data.xml
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas 927730793 Nov 25 23:04 HITS.47523449._004058.pool.root.1
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas      1065 Nov 25 23:05 memory_monitor_summary.json
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas        95 Nov 25 23:05 pilot_heartbeat.json
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas   1516240 Nov 25 23:05 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas   2189216 Nov 25 23:05 log.47523449._004058.job.log.tgz.1
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas      8668 Nov 25 23:05 heartbeat.json
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 23:06 boinc_mmap_file
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas        29 Nov 25 23:06 wrapper_checkpoint.txt
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas       744 Nov 25 23:06 pilotlog.txt
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas   3659547 Nov 25 23:06 log.47523449._004058.job.log.1
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas       353 Nov 25 23:06 output.list
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas       620 Nov 25 23:06 runtime_log
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas   5867520 Nov 25 23:06 result.tar.gz
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 23:06 runtime_log.err
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas       670 Nov 25 23:06 b0IKDmieIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBjHKDmYzmmyn.diag
[2025-11-25 23:06:13] -rw-r--r-- 1 boincer umatlas     21291 Nov 25 23:06 stderr.txt
[2025-11-25 23:06:13] HITS file was successfully produced:
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas 927730793 Nov 25 23:04 shared/HITS.pool.root.1
[2025-11-25 23:06:13]  *** Contents of shared directory: ***
[2025-11-25 23:06:13] total 1313564
[2025-11-25 23:06:13] -rw-r--r-- 2 boincer umatlas 410871086 Nov 25 15:49 ATLAS.root_0
[2025-11-25 23:06:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 15:49 start_atlas.sh
[2025-11-25 23:06:13] -rw-r--r-- 2 boincer umatlas    590092 Nov 25 15:49 input.tar.gz
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas 927730793 Nov 25 23:04 HITS.pool.root.1
[2025-11-25 23:06:13] -rw------- 1 boincer umatlas   5867520 Nov 25 23:06 result.tar.gz
23:06:14 (5956): run_atlas exited; CPU time 294346.489484
23:06:14 (5956): called boinc_finish(0)

</stderr_txt>
]]>

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