Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:27:39 (3020164): wrapper (7.7.26015): starting
17:27:39 (3020164): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 17:27:39] Arguments: --nthreads 8
[2025-11-25 17:27:39] Threads: 8
[2025-11-25 17:27:39] Checking for CVMFS
[2025-11-25 17:27:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:27:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:27:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:27:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:27:39] 2.13.3.0 1933508 26411 236736 153300 2 709 31085491 32503809 46289 16776704 0 152960625 99.521 183596626 38462 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 17:27:39] CVMFS is ok
[2025-11-25 17:27:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:27:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:27:39] Further information can be found at the LHC@home message board.
[2025-11-25 17:27:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:27:39] Checking for apptainer binary...
[2025-11-25 17:27:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:27:39] Running /usr/bin/apptainer --version
[2025-11-25 17:27:39] apptainer version 1.4.4-1.el9
[2025-11-25 17:27:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:27:39] c7-3-16.aglt2.org
[2025-11-25 17:27:39] apptainer works
[2025-11-25 17:27:40] Set ATHENA_PROC_NUMBER=8
[2025-11-25 17:27:40] Set ATHENA_CORE_NUMBER=8
[2025-11-25 17:27:40] Starting ATLAS job with PandaID=6895374394
[2025-11-25 17:27:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:34:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:34:35] 2025-11-26 13:33:44,508 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:34:35] 2025-11-26 13:33:44,509 | INFO     | sum of square deviations: 219334630310.0089
[2025-11-26 08:34:35] 2025-11-26 13:33:44,525 | INFO     | sum of deviations: 1467621893009.182
[2025-11-26 08:34:35] 2025-11-26 13:33:44,525 | INFO     | mean x: 1764136858.3142536
[2025-11-26 08:34:35] 2025-11-26 13:33:44,525 | INFO     | mean y: 2976533.324354658
[2025-11-26 08:34:35] 2025-11-26 13:33:44,525 | INFO     | intersect: -11801296562.387918
[2025-11-26 08:34:35] 2025-11-26 13:33:44,526 | INFO     | chi2: 7.812516560993154
[2025-11-26 08:34:35] 2025-11-26 13:33:44,527 | INFO     | sum of square deviations: 215662860817.01282
[2025-11-26 08:34:35] 2025-11-26 13:33:44,541 | INFO     | sum of deviations: 1802675708082.522
[2025-11-26 08:34:35] 2025-11-26 13:33:44,541 | INFO     | mean x: 1764136705.8160272
[2025-11-26 08:34:35] 2025-11-26 13:33:44,541 | INFO     | mean y: 2990448.51241535
[2025-11-26 08:34:35] 2025-11-26 13:33:44,541 | INFO     | intersect: -14743018081.948492
[2025-11-26 08:34:35] 2025-11-26 13:33:44,542 | INFO     | chi2: 4.13763090040037
[2025-11-26 08:34:35] 2025-11-26 13:33:44,542 | INFO     | current chi2=4.13763090040037 (change=47.03843674317434 %)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,543 | INFO     | sum of square deviations: 212032301399.0106
[2025-11-26 08:34:35] 2025-11-26 13:33:44,558 | INFO     | sum of deviations: 1953826551955.2102
[2025-11-26 08:34:35] 2025-11-26 13:33:44,558 | INFO     | mean x: 1764136553.3178205
[2025-11-26 08:34:35] 2025-11-26 13:33:44,558 | INFO     | mean y: 2996781.088535755
[2025-11-26 08:34:35] 2025-11-26 13:33:44,558 | INFO     | intersect: -16253096353.800156
[2025-11-26 08:34:35] 2025-11-26 13:33:44,559 | INFO     | chi2: 2.788294913568211
[2025-11-26 08:34:35] 2025-11-26 13:33:44,559 | INFO     | current chi2=2.788294913568211 (change=32.61131839240646 %)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,560 | INFO     | sum of square deviations: 208442665874.1405
[2025-11-26 08:34:35] 2025-11-26 13:33:44,574 | INFO     | sum of deviations: 1932576120962.5803
[2025-11-26 08:34:35] 2025-11-26 13:33:44,574 | INFO     | mean x: 1764136400.8184931
[2025-11-26 08:34:35] 2025-11-26 13:33:44,574 | INFO     | mean y: 2995878.2111872146
[2025-11-26 08:34:35] 2025-11-26 13:33:44,574 | INFO     | intersect: -16353194290.654112
[2025-11-26 08:34:35] 2025-11-26 13:33:44,575 | INFO     | chi2: 2.784832820273407
[2025-11-26 08:34:35] 2025-11-26 13:33:44,575 | INFO     | current chi2=2.784832820273407 (change=0.12416524801435937 %)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,575 | INFO     | right removable region: 875
[2025-11-26 08:34:35] 2025-11-26 13:33:44,576 | INFO     | sum of square deviations: 215662690017.01266
[2025-11-26 08:34:35] 2025-11-26 13:33:44,590 | INFO     | sum of deviations: 1229276215474.295
[2025-11-26 08:34:35] 2025-11-26 13:33:44,590 | INFO     | mean x: 1764137010.8160272
[2025-11-26 08:34:35] 2025-11-26 13:33:44,590 | INFO     | mean y: 2986415.3453724603
[2025-11-26 08:34:35] 2025-11-26 13:33:44,590 | INFO     | intersect: -10052585404.068495
[2025-11-26 08:34:35] 2025-11-26 13:33:44,591 | INFO     | chi2: 5.650436185268073
[2025-11-26 08:34:35] 2025-11-26 13:33:44,591 | INFO     | current chi2=5.650436185268073 (change=27.674570144530097 %)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,592 | INFO     | sum of square deviations: 212032014088.6442
[2025-11-26 08:34:35] 2025-11-26 13:33:44,612 | INFO     | sum of deviations: 1159279278764.2559
[2025-11-26 08:34:35] 2025-11-26 13:33:44,612 | INFO     | mean x: 1764137163.3166857
[2025-11-26 08:34:35] 2025-11-26 13:33:44,612 | INFO     | mean y: 2989354.608399546
[2025-11-26 08:34:35] 2025-11-26 13:33:44,612 | INFO     | intersect: -9642382676.220781
[2025-11-26 08:34:35] 2025-11-26 13:33:44,613 | INFO     | chi2: 5.578616465400028
[2025-11-26 08:34:35] 2025-11-26 13:33:44,613 | INFO     | current chi2=5.578616465400028 (change=1.2710473583489816 %)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,613 | INFO     | left removable region: 20
[2025-11-26 08:34:35] 2025-11-26 13:33:44,614 | INFO     | sum of square deviations: 193808177586.54944
[2025-11-26 08:34:35] 2025-11-26 13:33:44,628 | INFO     | sum of deviations: 1518614336345.8196
[2025-11-26 08:34:35] 2025-11-26 13:33:44,628 | INFO     | mean x: 1764136980.3216374
[2025-11-26 08:34:35] 2025-11-26 13:33:44,628 | INFO     | mean y: 3013509.8152046786
[2025-11-26 08:34:35] 2025-11-26 13:33:44,628 | INFO     | intersect: -13820158158.975054
[2025-11-26 08:34:35] 2025-11-26 13:33:44,629 | INFO     | chi2: 0.48107811223403796
[2025-11-26 08:34:35] 2025-11-26 13:33:44,629 | INFO     | current memory leak: 7.84 B/s (using 855 data points, chi2=0.48)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,630 | INFO     | could have reported an average CPU frequency of 3272 MHz (33 samples)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,630 | INFO     | ..............................
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . Timing measurements:
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . get job = 0 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . initial setup = 3 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . payload setup = 9 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . stage-in = 0 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . payload execution = 54302 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . stage-out = 3 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | . log creation = 0 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,631 | INFO     | ..............................
[2025-11-26 08:34:35] 2025-11-26 13:33:44,742 | INFO     | 
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | job summary report
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | --------------------------------------------------
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | PanDA job id: 6895374394
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | task id: 47556137
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | errors: (none)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | pilot state: finished 
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | transexitcode: 0
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | exeerrorcode: 0
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | exeerrordiag: 
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | exitcode: 0
[2025-11-26 08:34:35] 2025-11-26 13:33:44,743 | INFO     | exitmsg: OK
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | cpuconsumptiontime: 193392 s
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | nevents: 1000
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | neventsw: 0
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | pid: 3045397
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | pgrp: 3045397
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | corecount: 8
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | event service: False
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | sizes: {0: 2284088, 1: 2284343, 9: 2284605, 12: 2284633, 54317: 2335952, 54322: 2345130, 54329: 2345384}
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | --------------------------------------------------
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | 
[2025-11-26 08:34:35] 2025-11-26 13:33:44,744 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-26 08:34:35] 2025-11-26 13:33:44,773 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,773 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,773 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,773 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,773 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,773 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:34:35] 2025-11-26 13:33:44,775 | INFO     | job 6895374394 has completed (purged errors)
[2025-11-26 08:34:35] 2025-11-26 13:33:44,775 | INFO     | overall cleanup function is called
[2025-11-26 08:34:35] 2025-11-26 13:33:45,799 | INFO     | --- collectZombieJob: --- 10, [3045397]
[2025-11-26 08:34:35] 2025-11-26 13:33:45,799 | INFO     | zombie collector waiting for pid 3045397
[2025-11-26 08:34:35] 2025-11-26 13:33:45,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:34:35] 2025-11-26 13:33:45,799 | INFO     | collected zombie processes
[2025-11-26 08:34:35] 2025-11-26 13:33:45,800 | INFO     | will attempt to kill all subprocesses of pid=3045397
[2025-11-26 08:34:35] 2025-11-26 13:33:46,619 | INFO     | PID=3031527 has CPU usage=19.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 08:34:35] 2025-11-26 13:33:46,619 | INFO     | .. there are 79 such processes running
[2025-11-26 08:34:35] 2025-11-26 13:33:47,016 | INFO     | process IDs to be killed: [3045397] (in reverse order)
[2025-11-26 08:34:35] 2025-11-26 13:33:47,233 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:34:35] 2025-11-26 13:33:47,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:34:35] 2025-11-26 13:33:47,262 | INFO     | did not find any defunct processes belonging to 3045397
[2025-11-26 08:34:35] 2025-11-26 13:33:47,290 | INFO     | did not find any defunct processes belonging to 3045397
[2025-11-26 08:34:35] 2025-11-26 13:33:47,292 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:34:35] 2025-11-26 13:33:47,292 | INFO     | ready for new job
[2025-11-26 08:34:35] 2025-11-26 13:33:47,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:34:35] 2025-11-26 13:33:47,297 | INFO     | ***************************************
[2025-11-26 08:34:35] 2025-11-26 13:33:47,300 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:34:35] 2025-11-26 13:33:47,300 | INFO     | ***************************************
[2025-11-26 08:34:35] 2025-11-26 13:33:47,300 | INFO     | 
[2025-11-26 08:34:35] 2025-11-26 13:33:47,307 | INFO     | architecture information:
[2025-11-26 08:34:35] 2025-11-26 13:33:47,310 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:34:35] 2025-11-26 13:33:47,329 | INFO     | cat /etc/os-release:
[2025-11-26 08:34:35] NAME="CentOS Linux"
[2025-11-26 08:34:35] VERSION="7 (Core)"
[2025-11-26 08:34:35] ID="centos"
[2025-11-26 08:34:35] ID_LIKE="rhel fedora"
[2025-11-26 08:34:35] VERSION_ID="7"
[2025-11-26 08:34:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:34:35] ANSI_COLOR="0;31"
[2025-11-26 08:34:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:34:35] HOME_URL="https://www.centos.org/"
[2025-11-26 08:34:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:34:35] 
[2025-11-26 08:34:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:34:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:34:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:34:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:34:35] 
[2025-11-26 08:34:35] 2025-11-26 13:33:47,329 | INFO     | ***************************************
[2025-11-26 08:34:35] 2025-11-26 13:33:47,833 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-26 08:34:35] 2025-11-26 13:33:47,896 | INFO     | sufficient remaining disk space (88840601600 B)
[2025-11-26 08:34:35] 2025-11-26 13:33:47,896 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:34:35] 2025-11-26 13:33:47,896 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:34:35] 2025-11-26 13:33:47,896 | INFO     | update_server=False
[2025-11-26 08:34:35] 2025-11-26 13:33:47,896 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:34:35] 2025-11-26 13:33:47,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:34:35] 2025-11-26 13:33:47,897 | INFO     | aborting loop
[2025-11-26 08:34:35] 2025-11-26 13:33:48,395 | INFO     | all data control threads have been joined
[2025-11-26 08:34:35] 2025-11-26 13:33:48,613 | INFO     | all payload control threads have been joined
[2025-11-26 08:34:35] 2025-11-26 13:33:48,617 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:34:35] 2025-11-26 13:33:48,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:34:35] 2025-11-26 13:33:48,822 | INFO     | all job control threads have been joined
[2025-11-26 08:34:35] 2025-11-26 13:33:48,901 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:48,902 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,278 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,289 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,347 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,400 | INFO     | [data] control thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,617 | INFO     | [payload] control thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:34:35] 2025-11-26 13:33:49,787 | INFO     | [job] validate thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:49,827 | INFO     | [job] control thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:50,141 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:50,251 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:50,639 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:50,745 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:33:52,679 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:34:35] 2025-11-26 13:34:19,487 | INFO     | PID=3031527 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:34:35] 2025-11-26 13:34:19,487 | INFO     | .. there are 79 such processes running
[2025-11-26 08:34:35] 2025-11-26 13:34:19,487 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:34:35] 2025-11-26 13:34:19,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:34:35] 2025-11-26 13:34:19,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:34:35] 2025-11-26 13:34:29,089 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:34:35] 2025-11-26 13:34:29,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099806639936)>', '<ExcThread(monitor, started 140099316594432)>']
[2025-11-26 08:34:35] 2025-11-26 13:34:30,547 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:34:35] 2025-11-26 13:34:30,547 | INFO     | [monitor] control thread has ended
[2025-11-26 08:34:35] 2025-11-26 13:34:34,849 | INFO     | all workflow threads have been joined
[2025-11-26 08:34:35] 2025-11-26 13:34:34,849 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:34:35] 2025-11-26 13:34:34,850 | INFO     | traces error code: 0
[2025-11-26 08:34:35] 2025-11-26 13:34:34,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:34:35] 2025-11-26 13:34:35,053 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:34:35] 2025-11-26 13:34:35,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:34:35] 2025-11-26 13:34:35,068 [wrapper] pilotpid: 3031527
[2025-11-26 08:34:35] 2025-11-26 13:34:35,071 [wrapper] Pilot exit status: 0
[2025-11-26 08:34:35] 2025-11-26 13:34:35,082 [wrapper] pandaids: 6895374394
[2025-11-26 08:34:35] 2025-11-26 13:34:35,226 [wrapper] cleanup supervisor_pilot 1912712 3031528
[2025-11-26 08:34:35] 2025-11-26 13:34:35,229 [wrapper] Test setup, not cleaning
[2025-11-26 08:34:35] 2025-11-26 13:34:35,232 [wrapper] apfmon messages muted
[2025-11-26 08:34:35] 2025-11-26 13:34:35,235 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:34:35] 2025-11-26 13:34:35,240 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:34:35]  *** Error codes and diagnostics ***
[2025-11-26 08:34:35]     "exeErrorCode": 0,
[2025-11-26 08:34:35]     "exeErrorDiag": "",
[2025-11-26 08:34:35]     "pilotErrorCode": 0,
[2025-11-26 08:34:35]     "pilotErrorDiag": "",
[2025-11-26 08:34:35]  *** Listing of results directory ***
[2025-11-26 08:34:35] total 1327660
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 18:11 pilot3.tar.gz
[2025-11-26 08:34:35] -rwx------. 1 boincer umatlas     36292 Nov 23 18:17 runpilot2-wrapper.sh
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 18:17 queuedata.json
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:34:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 17:27 run_atlas
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 17:27 job.xml
[2025-11-26 08:34:35] -rw-r--r--. 2 boincer umatlas 408612831 Nov 25 17:27 EVNT.47483658._000940.pool.root.1
[2025-11-26 08:34:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:27 start_atlas.sh
[2025-11-26 08:34:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 17:27 shared
[2025-11-26 08:34:35] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 17:27 input.tar.gz
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 17:27 boinc_lockfile
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 17:27 pandaJob.out
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas        57 Nov 25 17:27 setup.sh.local
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas    991877 Nov 25 17:27 agis_schedconf.cvmfs.json
[2025-11-26 08:34:35] drwx------. 5 boincer umatlas      4096 Nov 25 17:27 pilot3
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:24 boinc_task_state.xml
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 08:30 init_data.xml
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas 928562036 Nov 26 08:32 HITS.47556137._009267.pool.root.1
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas      1072 Nov 26 08:33 memory_monitor_summary.json
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:33 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas   2068364 Nov 26 08:33 log.47556137._009267.job.log.tgz.1
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas      8637 Nov 26 08:33 heartbeat.json
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas        95 Nov 26 08:34 pilot_heartbeat.json
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:34 boinc_mmap_file
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:34 wrapper_checkpoint.txt
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas      4824 Nov 26 08:34 pilotlog.txt
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas   7146250 Nov 26 08:34 log.47556137._009267.job.log.1
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas       353 Nov 26 08:34 output.list
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:34 runtime_log
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas   9236480 Nov 26 08:34 result.tar.gz
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 08:34 runtime_log.err
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas       663 Nov 26 08:34 cq8LDm6VYh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8oIKDmzR90Sn.diag
[2025-11-26 08:34:35] -rw-r--r--. 1 boincer umatlas     21232 Nov 26 08:34 stderr.txt
[2025-11-26 08:34:35] HITS file was successfully produced:
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas 928562036 Nov 26 08:32 shared/HITS.pool.root.1
[2025-11-26 08:34:35]  *** Contents of shared directory: ***
[2025-11-26 08:34:35] total 1315460
[2025-11-26 08:34:35] -rw-r--r--. 2 boincer umatlas 408612831 Nov 25 17:27 ATLAS.root_0
[2025-11-26 08:34:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 17:27 start_atlas.sh
[2025-11-26 08:34:35] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 17:27 input.tar.gz
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas 928562036 Nov 26 08:32 HITS.pool.root.1
[2025-11-26 08:34:35] -rw-------. 1 boincer umatlas   9236480 Nov 26 08:34 result.tar.gz
08:34:36 (3020164): run_atlas exited; CPU time 195103.302437
08:34:36 (3020164): called boinc_finish(0)

</stderr_txt>
]]>

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