Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:09:54 (3095502): wrapper (7.7.26015): starting
12:09:54 (3095502): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 12:09:54] Arguments: --nthreads 12
[2025-11-25 12:09:54] Threads: 12
[2025-11-25 12:09:54] Checking for CVMFS
[2025-11-25 12:09:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:09:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:09:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:09:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:09:55] 2.11.5.0 2104101 27386 206496 153295 1 615 42420975 45568000 22605 130560 0 302734219 99.781 198124463 24616 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-25 12:09:55] CVMFS is ok
[2025-11-25 12:09:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:09:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:09:55] Further information can be found at the LHC@home message board.
[2025-11-25 12:09:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:09:55] Checking for apptainer binary...
[2025-11-25 12:09:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:09:55] Running /usr/bin/apptainer --version
[2025-11-25 12:09:55] apptainer version 1.4.1-1.el9
[2025-11-25 12:09:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:09:55] wns0090.triumf.lcg
[2025-11-25 12:09:55] apptainer works
[2025-11-25 12:09:55] Set ATHENA_PROC_NUMBER=12
[2025-11-25 12:09:55] Set ATHENA_CORE_NUMBER=12
[2025-11-25 12:09:55] Starting ATLAS job with PandaID=6896766903
[2025-11-25 12:09:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:14:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 12:14:09] 2025-11-25 20:13:13,372 | WARNING  | wrong length of table data, x=[1764101426.0], y=[1556.0] (must be same and length>=4)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,372 | INFO     | could have reported an average CPU frequency of 2775 MHz (4 samples)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | ..............................
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . Timing measurements:
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . get job = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . initial setup = 2 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . payload setup = 4 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . stage-in = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . payload execution = 44 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . stage-out = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . log creation = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | ..............................
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896766903/pilotlog.txt
[2025-11-25 12:14:09] 2025-11-25 20:13:13,383 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 12:14:09] - Log from pilotlog.txt -
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | found no stored workdir sizes
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 12:14:09] 2025-11-25 20:13:13,372 | WARNING  | wrong length of table data, x=[1764101426.0], y=[1556.0] (must be same and length>=4)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,372 | INFO     | could have reported an average CPU frequency of 2775 MHz (4 samples)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | ..............................
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . Timing measurements:
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . get job = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . initial setup = 2 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . payload setup = 4 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . stage-in = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . payload execution = 44 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . stage-out = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . log creation = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | ..............................
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896766903/pilotlog.txt
[2025-11-25 12:14:09] 2025-11-25 20:13:13,383 | WARNING  | 
[2025-11-25 12:14:09] [begin log extracts]
[2025-11-25 12:14:09] - Log from pilotlog.txt -
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | WARNING  | found no stored workdir sizes
[2025-11-25 12:14:09] 2025-11-25 20:13:13,371 | INFO     | will not add max space = 0 B to job metrics
[2025-11-25 12:14:09] 2025-11-25 20:13:13,372 | WARNING  | wrong length of table data, x=[1764101426.0], y=[1556.0] (must be same and length>=4)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,372 | INFO     | could have reported an average CPU frequency of 2775 MHz (4 samples)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | ..............................
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . Timing measurements:
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . get job = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . initial setup = 2 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . payload setup = 4 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . stage-in = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . payload execution = 44 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . stage-out = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | . log creation = 0 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | ..............................
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 12:14:09] 2025-11-25 20:13:13,373 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896766903/pilotlog.txt
[2025-11-25 12:14:09] [end log extracts]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,383 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,384 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 12:14:09] 2025-11-25 20:13:13,441 | INFO     | 
[2025-11-25 12:14:09] 2025-11-25 20:13:13,441 | INFO     | job summary report
[2025-11-25 12:14:09] 2025-11-25 20:13:13,441 | INFO     | --------------------------------------------------
[2025-11-25 12:14:09] 2025-11-25 20:13:13,441 | INFO     | PanDA job id: 6896766903
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | task id: 47556185
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 12:11:02,314 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | pilot state: failed 
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | transexitcode: 65
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | exeerrorcode: 65
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | exitcode: 65
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | cpuconsumptiontime: 38 s
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | nevents: 0
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | neventsw: 0
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | pid: 3105921
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | pgrp: 3105921
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | corecount: 12
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | event service: False
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | sizes: {0: 2284253, 3: 2284515, 11: 2284543, 52: 2314274, 55: 2314274, 175: 2314440}
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | --------------------------------------------------
[2025-11-25 12:14:09] 2025-11-25 20:13:13,442 | INFO     | 
[2025-11-25 12:14:09] 2025-11-25 20:13:13,443 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 12:14:09] 2025-11-25 20:13:13,456 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,457 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:14:09] 2025-11-25 20:13:13,458 | INFO     | job 6896766903 has completed (purged errors)
[2025-11-25 12:14:09] 2025-11-25 20:13:13,458 | INFO     | overall cleanup function is called
[2025-11-25 12:14:09] 2025-11-25 20:13:14,464 | INFO     | --- collectZombieJob: --- 10, [3105921]
[2025-11-25 12:14:09] 2025-11-25 20:13:14,464 | INFO     | zombie collector waiting for pid 3105921
[2025-11-25 12:14:09] 2025-11-25 20:13:14,464 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:14:09] 2025-11-25 20:13:14,464 | INFO     | collected zombie processes
[2025-11-25 12:14:09] 2025-11-25 20:13:14,465 | INFO     | will attempt to kill all subprocesses of pid=3105921
[2025-11-25 12:14:09] 2025-11-25 20:13:14,628 | INFO     | process IDs to be killed: [3105921] (in reverse order)
[2025-11-25 12:14:09] 2025-11-25 20:13:14,689 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:14:09] 2025-11-25 20:13:14,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:14:09] 2025-11-25 20:13:14,696 | INFO     | did not find any defunct processes belonging to 3105921
[2025-11-25 12:14:09] 2025-11-25 20:13:14,703 | INFO     | did not find any defunct processes belonging to 3105921
[2025-11-25 12:14:09] 2025-11-25 20:13:14,704 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:14:09] 2025-11-25 20:13:14,704 | INFO     | ready for new job
[2025-11-25 12:14:09] 2025-11-25 20:13:14,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:14:09] 2025-11-25 20:13:14,706 | INFO     | ***************************************
[2025-11-25 12:14:09] 2025-11-25 20:13:14,706 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:14:09] 2025-11-25 20:13:14,706 | INFO     | ***************************************
[2025-11-25 12:14:09] 2025-11-25 20:13:14,706 | INFO     | 
[2025-11-25 12:14:09] 2025-11-25 20:13:14,708 | INFO     | architecture information:
[2025-11-25 12:14:09] 2025-11-25 20:13:14,708 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:14:09] 2025-11-25 20:13:14,719 | INFO     | cat /etc/os-release:
[2025-11-25 12:14:09] NAME="CentOS Linux"
[2025-11-25 12:14:09] VERSION="7 (Core)"
[2025-11-25 12:14:09] ID="centos"
[2025-11-25 12:14:09] ID_LIKE="rhel fedora"
[2025-11-25 12:14:09] VERSION_ID="7"
[2025-11-25 12:14:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:14:09] ANSI_COLOR="0;31"
[2025-11-25 12:14:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:14:09] HOME_URL="https://www.centos.org/"
[2025-11-25 12:14:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:14:09] 
[2025-11-25 12:14:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:14:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:14:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:14:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:14:09] 
[2025-11-25 12:14:09] 2025-11-25 20:13:14,719 | INFO     | ***************************************
[2025-11-25 12:14:09] 2025-11-25 20:13:15,220 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 12:14:09] 2025-11-25 20:13:15,231 | INFO     | sufficient remaining disk space (1977948831744 B)
[2025-11-25 12:14:09] 2025-11-25 20:13:15,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:14:09] 2025-11-25 20:13:15,232 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:14:09] 2025-11-25 20:13:15,232 | INFO     | update_server=False
[2025-11-25 12:14:09] 2025-11-25 20:13:15,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:14:09] 2025-11-25 20:13:15,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:14:09] 2025-11-25 20:13:15,368 | INFO     | all data control threads have been joined
[2025-11-25 12:14:09] 2025-11-25 20:13:15,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:14:09] 2025-11-25 20:13:15,465 | INFO     | aborting loop
[2025-11-25 12:14:09] 2025-11-25 20:13:15,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:14:09] 2025-11-25 20:13:16,001 | INFO     | all payload control threads have been joined
[2025-11-25 12:14:09] 2025-11-25 20:13:16,174 | INFO     | all job control threads have been joined
[2025-11-25 12:14:09] 2025-11-25 20:13:16,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:14:09] 2025-11-25 20:13:16,236 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:16,237 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:16,373 | INFO     | [data] control thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:16,391 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:16,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:16,468 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,006 | INFO     | [payload] control thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,038 | INFO     | [job] validate thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,117 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,147 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,180 | INFO     | [job] control thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,268 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,610 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,647 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:17,881 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:20,187 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:14:09] 2025-11-25 20:13:45,614 | INFO     | PID=3099163 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:14:09] 2025-11-25 20:13:45,614 | INFO     | .. there are 23 such processes running
[2025-11-25 12:14:09] 2025-11-25 20:13:45,615 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:14:09] 2025-11-25 20:13:45,615 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:14:09] 2025-11-25 20:13:45,615 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:14:09] 2025-11-25 20:14:03,348 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:14:09] 2025-11-25 20:14:04,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140606649210688)>', '<ExcThread(monitor, started 140606248560384)>']
[2025-11-25 12:14:09] 2025-11-25 20:14:04,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:14:09] 2025-11-25 20:14:04,711 | INFO     | [monitor] control thread has ended
[2025-11-25 12:14:09] 2025-11-25 20:14:09,241 | INFO     | all workflow threads have been joined
[2025-11-25 12:14:09] 2025-11-25 20:14:09,242 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:14:09] 2025-11-25 20:14:09,242 | INFO     | traces error code: 0
[2025-11-25 12:14:09] 2025-11-25 20:14:09,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:14:09] 2025-11-25 20:14:09,373 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:14:09] 2025-11-25 20:14:09,375 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:14:09] 2025-11-25 20:14:09,376 [wrapper] pilotpid: 3099163
[2025-11-25 12:14:09] 2025-11-25 20:14:09,378 [wrapper] Pilot exit status: 0
[2025-11-25 12:14:09] 2025-11-25 20:14:09,384 [wrapper] pandaids: 6896766903
[2025-11-25 12:14:09] 2025-11-25 20:14:09,424 [wrapper] cleanup supervisor_pilot 3099170 3099164
[2025-11-25 12:14:09] 2025-11-25 20:14:09,426 [wrapper] Test setup, not cleaning
[2025-11-25 12:14:09] 2025-11-25 20:14:09,428 [wrapper] apfmon messages muted
[2025-11-25 12:14:09] 2025-11-25 20:14:09,430 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:14:09] 2025-11-25 20:14:09,432 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:14:09]  *** Error codes and diagnostics ***
[2025-11-25 12:14:09]     "exeErrorCode": 65,
[2025-11-25 12:14:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 12:14:09]     "pilotErrorCode": 1305,
[2025-11-25 12:14:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 12:14:09]  *** Listing of results directory ***
[2025-11-25 12:14:09] total 405632
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc    576529 Nov 25 02:36 pilot3.tar.gz
[2025-11-25 12:14:09] -rwx------. 1 boinc boinc     36292 Nov 25 02:49 runpilot2-wrapper.sh
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc      5112 Nov 25 02:49 queuedata.json
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc       100 Nov 25 12:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:14:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 12:09 run_atlas
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc       105 Nov 25 12:09 job.xml
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc      6595 Nov 25 12:09 init_data.xml
[2025-11-25 12:14:09] -rw-r--r--. 2 boinc boinc 411170597 Nov 25 12:09 EVNT.47483658._004287.pool.root.1
[2025-11-25 12:14:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 12:09 start_atlas.sh
[2025-11-25 12:14:09] drwxrwx--x. 2 boinc boinc      4096 Nov 25 12:09 shared
[2025-11-25 12:14:09] -rw-r--r--. 2 boinc boinc    590101 Nov 25 12:09 input.tar.gz
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc         0 Nov 25 12:09 boinc_lockfile
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc      2781 Nov 25 12:09 pandaJob.out
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc    991893 Nov 25 12:10 agis_schedconf.cvmfs.json
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc   1516240 Nov 25 12:10 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:14:09] drwx------. 5 boinc boinc      4096 Nov 25 12:10 pilot3
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc       523 Nov 25 12:11 boinc_task_state.xml
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc       970 Nov 25 12:11 memory_monitor_summary.json
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc     47716 Nov 25 12:11 log.47556185._000501.job.log.tgz.1
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc        95 Nov 25 12:13 pilot_heartbeat.json
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc     10299 Nov 25 12:13 heartbeat.json
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc      8192 Nov 25 12:14 boinc_mmap_file
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc        23 Nov 25 12:14 wrapper_checkpoint.txt
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc      4823 Nov 25 12:14 pilotlog.txt
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc     90948 Nov 25 12:14 log.47556185._000501.job.log.1
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc       186 Nov 25 12:14 output.list
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc       620 Nov 25 12:14 runtime_log
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc    163840 Nov 25 12:14 result.tar.gz
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc      8636 Nov 25 12:14 runtime_log.err
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc       644 Nov 25 12:14 aecMDm9m5h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTKMKDmXCv4hm.diag
[2025-11-25 12:14:09] -rw-r--r--. 1 boinc boinc     22251 Nov 25 12:14 stderr.txt
[2025-11-25 12:14:09] No HITS result produced
[2025-11-25 12:14:09]  *** Contents of shared directory: ***
[2025-11-25 12:14:09] total 402296
[2025-11-25 12:14:09] -rw-r--r--. 2 boinc boinc 411170597 Nov 25 12:09 ATLAS.root_0
[2025-11-25 12:14:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 12:09 start_atlas.sh
[2025-11-25 12:14:09] -rw-r--r--. 2 boinc boinc    590101 Nov 25 12:09 input.tar.gz
[2025-11-25 12:14:09] -rw-------. 1 boinc boinc    163840 Nov 25 12:14 result.tar.gz
12:14:10 (3095502): run_atlas exited; CPU time 38.536850
12:14:10 (3095502): called boinc_finish(0)

</stderr_txt>
]]>

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