Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:31:14 (1419850): wrapper (7.7.26015): starting
09:31:14 (1419850): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 09:31:14] Arguments: --nthreads 11
[2025-11-26 09:31:14] Threads: 11
[2025-11-26 09:31:14] Checking for CVMFS
[2025-11-26 09:31:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:31:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:31:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:31:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:31:15] 2.13.3.0 11322 30173 239344 153324 1 279 26069492 32935936 19689 16776704 0 52109494 99.589 54073108 39726 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 09:31:15] CVMFS is ok
[2025-11-26 09:31:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:31:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:31:15] Further information can be found at the LHC@home message board.
[2025-11-26 09:31:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:31:15] Checking for apptainer binary...
[2025-11-26 09:31:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:31:15] Running /usr/bin/apptainer --version
[2025-11-26 09:31:15] apptainer version 1.4.4-1.el9
[2025-11-26 09:31:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:31:15] c6-1-26-4.aglt2.org
[2025-11-26 09:31:15] apptainer works
[2025-11-26 09:31:15] Set ATHENA_PROC_NUMBER=11
[2025-11-26 09:31:15] Set ATHENA_CORE_NUMBER=11
[2025-11-26 09:31:15] Starting ATLAS job with PandaID=6891585300
[2025-11-26 09:31:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:31:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:31:21] 2025-11-27 05:30:01,526 | INFO     | time since job start (53915s) is within the limit (172800.0s)
[2025-11-27 00:31:21] 2025-11-27 05:30:01,691 | INFO     | monitor loop #3365: job 0:6891585300 is in state 'finished'
[2025-11-27 00:31:21] 2025-11-27 05:30:01,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:31:21] 2025-11-27 05:30:03,533 | INFO     | time since job start (53917s) is within the limit (172800.0s)
[2025-11-27 00:31:21] 2025-11-27 05:30:04,201 | INFO     | monitor loop #3366: job 0:6891585300 is in state 'finished'
[2025-11-27 00:31:21] 2025-11-27 05:30:04,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:31:21] 2025-11-27 05:30:06,205 | INFO     | PID=1424026 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:31:21] 2025-11-27 05:30:06,205 | INFO     | .. there are 33 such processes running
[2025-11-27 00:31:21] 2025-11-27 05:30:06,712 | INFO     | monitor loop #3367: job 0:6891585300 is in state 'finished'
[2025-11-27 00:31:21] 2025-11-27 05:30:06,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:31:21] 2025-11-27 05:30:07,206 | INFO     | time since job start (53921s) is within the limit (172800.0s)
[2025-11-27 00:31:21] 2025-11-27 05:30:09,215 | INFO     | time since job start (53923s) is within the limit (172800.0s)
[2025-11-27 00:31:21] 2025-11-27 05:30:09,273 | INFO     | monitor loop #3368: job 0:6891585300 is in state 'finished'
[2025-11-27 00:31:21] 2025-11-27 05:30:09,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:31:21] 2025-11-27 05:30:11,244 | INFO     | time since job start (53925s) is within the limit (172800.0s)
[2025-11-27 00:31:21] 2025-11-27 05:30:11,779 | INFO     | monitor loop #3369: job 0:6891585300 is in state 'finished'
[2025-11-27 00:31:21] 2025-11-27 05:30:11,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:31:21] 2025-11-27 05:30:11,872 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:31:21] 2025-11-27 05:30:11,880 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3012.6868928571434
[2025-11-27 00:31:21] 2025-11-27 05:30:11,901 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891585300/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:31:21] 2025-11-27 05:30:11,902 | INFO     | extracted standard info from prmon json
[2025-11-27 00:31:21] 2025-11-27 05:30:11,902 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:31:21] 2025-11-27 05:30:11,902 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:31:21] 2025-11-27 05:30:11,920 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:31:21] 2025-11-27 05:30:11,922 | INFO     | sum of square deviations: 213467102343.33865
[2025-11-27 00:31:21] 2025-11-27 05:30:11,936 | INFO     | sum of deviations: 689403520464.1798
[2025-11-27 00:31:21] 2025-11-27 05:30:11,936 | INFO     | mean x: 1764194414.655719
[2025-11-27 00:31:21] 2025-11-27 05:30:11,936 | INFO     | mean y: 3349801.0532276332
[2025-11-27 00:31:21] 2025-11-27 05:30:11,936 | INFO     | intersect: -5694211213.714766
[2025-11-27 00:31:21] 2025-11-27 05:30:11,937 | INFO     | chi2: 17.3863454619097
[2025-11-27 00:31:21] 2025-11-27 05:30:11,938 | INFO     | sum of square deviations: 209861517837.0535
[2025-11-27 00:31:21] 2025-11-27 05:30:11,952 | INFO     | sum of deviations: 1040104260700.2552
[2025-11-27 00:31:21] 2025-11-27 05:30:11,953 | INFO     | mean x: 1764194262.165148
[2025-11-27 00:31:21] 2025-11-27 05:30:11,953 | INFO     | mean y: 3364630.1913439636
[2025-11-27 00:31:21] 2025-11-27 05:30:11,953 | INFO     | intersect: -8740239188.616701
[2025-11-27 00:31:21] 2025-11-27 05:30:11,954 | INFO     | chi2: 13.834487748308147
[2025-11-27 00:31:21] 2025-11-27 05:30:11,954 | INFO     | current chi2=13.834487748308147 (change=20.42900689729778 %)
[2025-11-27 00:31:21] 2025-11-27 05:30:11,954 | INFO     | right removable region: 877
[2025-11-27 00:31:21] 2025-11-27 05:30:11,955 | INFO     | sum of square deviations: 209860733381.70963
[2025-11-27 00:31:21] 2025-11-27 05:30:11,974 | INFO     | sum of deviations: 448545274142.1255
[2025-11-27 00:31:21] 2025-11-27 05:30:11,979 | INFO     | mean x: 1764194567.1628702
[2025-11-27 00:31:21] 2025-11-27 05:30:11,979 | INFO     | mean y: 3359967.8382687927
[2025-11-27 00:31:21] 2025-11-27 05:30:11,979 | INFO     | intersect: -3767336546.067488
[2025-11-27 00:31:21] 2025-11-27 05:30:11,980 | INFO     | chi2: 15.642905503852562
[2025-11-27 00:31:21] 2025-11-27 05:30:11,981 | INFO     | current chi2=15.642905503852562 (change=10.027638999102452 %)
[2025-11-27 00:31:21] 2025-11-27 05:30:11,981 | INFO     | left removable region: 10
[2025-11-27 00:31:21] 2025-11-27 05:30:11,982 | INFO     | sum of square deviations: 202071243721.2179
[2025-11-27 00:31:21] 2025-11-27 05:30:12,108 | INFO     | sum of deviations: 819522087921.7207
[2025-11-27 00:31:21] 2025-11-27 05:30:12,109 | INFO     | mean x: 1764194536.6782007
[2025-11-27 00:31:21] 2025-11-27 05:30:12,109 | INFO     | mean y: 3379806.1280276817
[2025-11-27 00:31:21] 2025-11-27 05:30:12,109 | INFO     | intersect: -7151504597.875867
[2025-11-27 00:31:21] 2025-11-27 05:30:12,110 | INFO     | chi2: 11.4206400150383
[2025-11-27 00:31:21] 2025-11-27 05:30:12,157 | INFO     | current memory leak: 4.06 B/s (using 867 data points, chi2=11.42)
[2025-11-27 00:31:21] 2025-11-27 05:30:12,158 | INFO     | could have reported an average CPU frequency of 2926 MHz (33 samples)
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | ..............................
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . Timing measurements:
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . get job = 0 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . initial setup = 2 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . payload setup = 5 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . stage-in = 0 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . payload execution = 53849 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . stage-out = 11 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | . log creation = 3 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,159 | INFO     | ..............................
[2025-11-27 00:31:21] 2025-11-27 05:30:12,599 | INFO     | 
[2025-11-27 00:31:21] 2025-11-27 05:30:12,599 | INFO     | job summary report
[2025-11-27 00:31:21] 2025-11-27 05:30:12,599 | INFO     | --------------------------------------------------
[2025-11-27 00:31:21] 2025-11-27 05:30:12,599 | INFO     | PanDA job id: 6891585300
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | task id: 47493068
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | errors: (none)
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | pilot state: finished 
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | transexitcode: 0
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | exeerrorcode: 0
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | exeerrordiag: 
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | exitcode: 0
[2025-11-27 00:31:21] 2025-11-27 05:30:12,603 | INFO     | exitmsg: OK
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | cpuconsumptiontime: 242705 s
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | nevents: 1000
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | neventsw: 0
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | pid: 1430387
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | pgrp: 1430387
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | corecount: 11
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | event service: False
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | sizes: {0: 2284304, 4: 2284566, 11: 2284594, 53859: 2334400, 53860: 2334399, 53872: 2343449, 53875: 2343633, 53910: 2343943}
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | --------------------------------------------------
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | 
[2025-11-27 00:31:21] 2025-11-27 05:30:12,604 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 00:31:21] 2025-11-27 05:30:12,822 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,823 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,823 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,823 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,823 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,823 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,824 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:31:21] 2025-11-27 05:30:12,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,825 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:31:21] 2025-11-27 05:30:12,825 | INFO     | job 6891585300 has completed (purged errors)
[2025-11-27 00:31:21] 2025-11-27 05:30:12,827 | INFO     | overall cleanup function is called
[2025-11-27 00:31:21] 2025-11-27 05:30:13,889 | INFO     | --- collectZombieJob: --- 10, [1430387]
[2025-11-27 00:31:21] 2025-11-27 05:30:13,889 | INFO     | zombie collector waiting for pid 1430387
[2025-11-27 00:31:21] 2025-11-27 05:30:13,889 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:31:21] 2025-11-27 05:30:13,890 | INFO     | collected zombie processes
[2025-11-27 00:31:21] 2025-11-27 05:30:13,890 | INFO     | will attempt to kill all subprocesses of pid=1430387
[2025-11-27 00:31:21] 2025-11-27 05:30:14,977 | INFO     | process IDs to be killed: [1430387] (in reverse order)
[2025-11-27 00:31:21] 2025-11-27 05:30:15,160 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:31:21] 2025-11-27 05:30:15,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:31:21] 2025-11-27 05:30:15,216 | INFO     | did not find any defunct processes belonging to 1430387
[2025-11-27 00:31:21] 2025-11-27 05:30:15,234 | INFO     | did not find any defunct processes belonging to 1430387
[2025-11-27 00:31:21] 2025-11-27 05:30:15,236 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:31:21] 2025-11-27 05:30:15,236 | INFO     | ready for new job
[2025-11-27 00:31:21] 2025-11-27 05:30:15,236 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:31:21] 2025-11-27 05:30:15,240 | INFO     | ***************************************
[2025-11-27 00:31:21] 2025-11-27 05:30:15,241 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:31:21] 2025-11-27 05:30:15,241 | INFO     | ***************************************
[2025-11-27 00:31:21] 2025-11-27 05:30:15,241 | INFO     | 
[2025-11-27 00:31:21] 2025-11-27 05:30:15,244 | INFO     | architecture information:
[2025-11-27 00:31:21] 2025-11-27 05:30:15,245 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:31:21] 2025-11-27 05:30:15,337 | INFO     | cat /etc/os-release:
[2025-11-27 00:31:21] NAME="CentOS Linux"
[2025-11-27 00:31:21] VERSION="7 (Core)"
[2025-11-27 00:31:21] ID="centos"
[2025-11-27 00:31:21] ID_LIKE="rhel fedora"
[2025-11-27 00:31:21] VERSION_ID="7"
[2025-11-27 00:31:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:31:21] ANSI_COLOR="0;31"
[2025-11-27 00:31:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:31:21] HOME_URL="https://www.centos.org/"
[2025-11-27 00:31:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:31:21] 
[2025-11-27 00:31:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:31:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:31:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:31:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:31:21] 
[2025-11-27 00:31:21] 2025-11-27 05:30:15,338 | INFO     | ***************************************
[2025-11-27 00:31:21] 2025-11-27 05:30:15,844 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 00:31:21] 2025-11-27 05:30:15,989 | INFO     | sufficient remaining disk space (69086478336 B)
[2025-11-27 00:31:21] 2025-11-27 05:30:15,989 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:31:21] 2025-11-27 05:30:15,989 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:31:21] 2025-11-27 05:30:15,989 | INFO     | update_server=False
[2025-11-27 00:31:21] 2025-11-27 05:30:15,989 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:31:21] 2025-11-27 05:30:15,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:31:21] 2025-11-27 05:30:15,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:31:21] 2025-11-27 05:30:15,990 | INFO     | aborting loop
[2025-11-27 00:31:21] 2025-11-27 05:30:16,454 | INFO     | all payload control threads have been joined
[2025-11-27 00:31:21] 2025-11-27 05:30:16,609 | INFO     | all job control threads have been joined
[2025-11-27 00:31:21] 2025-11-27 05:30:16,797 | INFO     | all data control threads have been joined
[2025-11-27 00:31:21] 2025-11-27 05:30:16,996 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:16,997 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,203 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,322 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:31:21] 2025-11-27 05:30:17,461 | INFO     | [payload] control thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,616 | INFO     | [job] control thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,770 | INFO     | [job] validate thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,771 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,802 | INFO     | [data] control thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,998 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:17,999 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:18,046 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:18,083 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:18,207 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:18,379 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:19,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:31:21] 2025-11-27 05:30:23,329 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:31:21] 2025-11-27 05:30:45,857 | INFO     | PID=1424026 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:31:21] 2025-11-27 05:30:45,857 | INFO     | .. there are 33 such processes running
[2025-11-27 00:31:21] 2025-11-27 05:30:45,857 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:31:21] 2025-11-27 05:30:45,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:31:21] 2025-11-27 05:30:45,857 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:31:21] 2025-11-27 05:31:00,771 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:31:21] 2025-11-27 05:31:01,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928809101120)>', '<ExcThread(monitor, started 139927954126592)>']
[2025-11-27 00:31:21] 2025-11-27 05:31:02,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:31:21] 2025-11-27 05:31:02,116 | INFO     | [monitor] control thread has ended
[2025-11-27 00:31:21] 2025-11-27 05:31:06,651 | INFO     | all workflow threads have been joined
[2025-11-27 00:31:21] 2025-11-27 05:31:06,652 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:31:21] 2025-11-27 05:31:06,652 | INFO     | traces error code: 0
[2025-11-27 00:31:21] 2025-11-27 05:31:06,652 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:31:21] 2025-11-27 05:31:06,950 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:31:21] 2025-11-27 05:31:06,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:31:21] 2025-11-27 05:31:07,001 [wrapper] pilotpid: 1424026
[2025-11-27 00:31:21] 2025-11-27 05:31:07,022 [wrapper] Pilot exit status: 0
[2025-11-27 00:31:21] 2025-11-27 05:31:07,118 [wrapper] pandaids: 6891585300
[2025-11-27 00:31:21] 2025-11-27 05:31:07,211 [wrapper] cleanup supervisor_pilot  294724 1424027
[2025-11-27 00:31:21] 2025-11-27 05:31:07,229 [wrapper] Test setup, not cleaning
[2025-11-27 00:31:21] 2025-11-27 05:31:07,251 [wrapper] apfmon messages muted
[2025-11-27 00:31:21] 2025-11-27 05:31:07,271 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:31:21] 2025-11-27 05:31:07,288 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:31:21]  *** Error codes and diagnostics ***
[2025-11-27 00:31:21]     "exeErrorCode": 0,
[2025-11-27 00:31:21]     "exeErrorDiag": "",
[2025-11-27 00:31:21]     "pilotErrorCode": 0,
[2025-11-27 00:31:21]     "pilotErrorDiag": "",
[2025-11-27 00:31:21]  *** Listing of results directory ***
[2025-11-27 00:31:21] total 1328272
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:24 queuedata.json
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-27 00:31:21] -rwx------. 1 boincer umatlas     36292 Nov 18 12:25 runpilot2-wrapper.sh
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas       100 Nov 26 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:31:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 09:31 run_atlas
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas       105 Nov 26 09:31 job.xml
[2025-11-27 00:31:21] -rw-r--r--. 2 boincer umatlas 411979224 Nov 26 09:31 EVNT.47493065._000477.pool.root.1
[2025-11-27 00:31:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 09:31 start_atlas.sh
[2025-11-27 00:31:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 09:31 shared
[2025-11-27 00:31:21] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 09:31 input.tar.gz
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas         0 Nov 26 09:31 boinc_lockfile
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 09:31 pandaJob.out
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas    992360 Nov 26 09:31 agis_schedconf.cvmfs.json
[2025-11-27 00:31:21] drwx------. 5 boincer umatlas      4096 Nov 26 09:31 pilot3
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:55 boinc_task_state.xml
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas 925530698 Nov 27 00:27 HITS.47493068._004763.pool.root.1
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas      1067 Nov 27 00:29 memory_monitor_summary.json
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:29 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas   2389099 Nov 27 00:29 log.47493068._004763.job.log.tgz.1
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas      8638 Nov 27 00:30 heartbeat.json
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas        95 Nov 27 00:30 pilot_heartbeat.json
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas      6846 Nov 27 00:30 init_data.xml
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas      4824 Nov 27 00:31 pilotlog.txt
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas   6971986 Nov 27 00:31 log.47493068._004763.job.log.1
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas       353 Nov 27 00:31 output.list
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:31 runtime_log
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas   9379840 Nov 27 00:31 result.tar.gz
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas      8711 Nov 27 00:31 runtime_log.err
[2025-11-27 00:31:21] -rw-------. 1 boincer umatlas       663 Nov 27 00:31 7NJNDm4cef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG2FKDmQmzxGn.diag
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:31 boinc_mmap_file
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:31 wrapper_checkpoint.txt
[2025-11-27 00:31:21] -rw-r--r--. 1 boincer umatlas     21861 Nov 27 00:31 stderr.txt
[2025-11-27 00:31:22] HITS file was successfully produced:
[2025-11-27 00:31:22] -rw-------. 1 boincer umatlas 925530698 Nov 27 00:27 shared/HITS.pool.root.1
[2025-11-27 00:31:22]  *** Contents of shared directory: ***
[2025-11-27 00:31:22] total 1315928
[2025-11-27 00:31:22] -rw-r--r--. 2 boincer umatlas 411979224 Nov 26 09:31 ATLAS.root_0
[2025-11-27 00:31:22] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 09:31 start_atlas.sh
[2025-11-27 00:31:22] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 09:31 input.tar.gz
[2025-11-27 00:31:22] -rw-------. 1 boincer umatlas 925530698 Nov 27 00:27 HITS.pool.root.1
[2025-11-27 00:31:22] -rw-------. 1 boincer umatlas   9379840 Nov 27 00:31 result.tar.gz
00:31:23 (1419850): run_atlas exited; CPU time 243549.104671
00:31:23 (1419850): called boinc_finish(0)

</stderr_txt>
]]>

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