Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:20:52 (4943): wrapper (7.7.26015): starting
01:20:52 (4943): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 01:20:52] Arguments: --nthreads 8
[2025-11-26 01:20:52] Threads: 8
[2025-11-26 01:20:52] Checking for CVMFS
[2025-11-26 01:20:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 01:20:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 01:20:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 01:20:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 01:20:53] 2.11.0.0 8405 64933 92264 153303 3 57 4018340 4096000 6809 130560 2 2531437 99.344 4044181 467 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-26 01:20:53] CVMFS is ok
[2025-11-26 01:20:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 01:20:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 01:20:53] Further information can be found at the LHC@home message board.
[2025-11-26 01:20:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 01:20:53] Checking for apptainer binary...
[2025-11-26 01:20:53] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-26 01:20:53] apptainer is not installed, using version from CVMFS
[2025-11-26 01:20:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 01:20:53] WARNING: Environment variable TMPDIR already has value [/tmp/job_10924907/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node195
[2025-11-26 01:20:53] apptainer works
[2025-11-26 01:20:53] Set ATHENA_PROC_NUMBER=8
[2025-11-26 01:20:53] Set ATHENA_CORE_NUMBER=8
[2025-11-26 01:20:53] Starting ATLAS job with PandaID=6895374677
[2025-11-26 01:20:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10924907/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:46:29]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:46:29] 2025-11-26 04:45:39,971 | INFO     | time since job start (15882s) is within the limit (172800.0s)
[2025-11-26 05:46:29] 2025-11-26 04:45:40,251 | INFO     | monitor loop #1158: job 0:6895374677 is in state 'finished'
[2025-11-26 05:46:29] 2025-11-26 04:45:40,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,155 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 05:46:29] 2025-11-26 04:45:41,159 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2520.0553281250004
[2025-11-26 05:46:29] 2025-11-26 04:45:41,164 | INFO     | using path: /tmp/job_10924907/atlas/pilot/slots/0/PanDA_Pilot-6895374677/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,164 | INFO     | extracted standard info from prmon json
[2025-11-26 05:46:29] 2025-11-26 04:45:41,164 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:46:29] 2025-11-26 04:45:41,164 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:46:29] 2025-11-26 04:45:41,167 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:46:29] 2025-11-26 04:45:41,167 | INFO     | sum of square deviations: 5449944045.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,168 | INFO     | sum of deviations: 445019344886.5
[2025-11-26 05:46:29] 2025-11-26 04:45:41,168 | INFO     | mean x: 1764124375.5
[2025-11-26 05:46:29] 2025-11-26 04:45:41,168 | INFO     | mean y: 3095186.65
[2025-11-26 05:46:29] 2025-11-26 04:45:41,168 | INFO     | intersect: -144047828529.45135
[2025-11-26 05:46:29] 2025-11-26 04:45:41,168 | INFO     | chi2: 4.818270195667008
[2025-11-26 05:46:29] 2025-11-26 04:45:41,168 | INFO     | sum of square deviations: 5141528960.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,169 | INFO     | sum of deviations: 456190398015.00006
[2025-11-26 05:46:29] 2025-11-26 04:45:41,169 | INFO     | mean x: 1764124223.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,169 | INFO     | mean y: 3100339.466666667
[2025-11-26 05:46:29] 2025-11-26 04:45:41,169 | INFO     | intersect: -156521648951.89447
[2025-11-26 05:46:29] 2025-11-26 04:45:41,170 | INFO     | chi2: 3.193686671107824
[2025-11-26 05:46:29] 2025-11-26 04:45:41,170 | INFO     | current chi2=3.193686671107824 (change=33.71715280766416 %)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,170 | INFO     | sum of square deviations: 4844974562.5
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | sum of deviations: 395156655620.99994
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | mean x: 1764124070.5
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | mean y: 3068959.816
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | intersect: -143879083321.2023
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | chi2: 2.84178994214425
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | current chi2=2.84178994214425 (change=11.018511369542342 %)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | right removable region: 249
[2025-11-26 05:46:29] 2025-11-26 04:45:41,171 | INFO     | sum of square deviations: 5141528960.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,172 | INFO     | sum of deviations: 389623805805.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,172 | INFO     | mean x: 1764124528.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,172 | INFO     | mean y: 3122391.8
[2025-11-26 05:46:29] 2025-11-26 04:45:41,172 | INFO     | intersect: -133681802435.1739
[2025-11-26 05:46:29] 2025-11-26 04:45:41,172 | INFO     | chi2: 3.523289009828535
[2025-11-26 05:46:29] 2025-11-26 04:45:41,172 | INFO     | current chi2=3.523289009828535 (change=26.87647502630775 %)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,173 | INFO     | sum of square deviations: 4844974562.5
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | sum of deviations: 370531122577.99994
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | mean x: 1764124680.5
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | mean y: 3132205.56
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | intersect: -134912560292.09705
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | chi2: 3.51813257312672
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | current chi2=3.51813257312672 (change=0.14635293010112832 %)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | left removable region: 20
[2025-11-26 05:46:29] 2025-11-26 04:45:41,174 | INFO     | sum of square deviations: 3723716330.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | sum of deviations: 286465578463.99994
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | mean x: 1764124650.0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | mean y: 3116963.1004366814
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | intersect: -135711030828.83179
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | chi2: 1.4259093469337498
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | current memory leak: 76.93 B/s (using 229 data points, chi2=1.43)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | could have reported an average CPU frequency of 2955 MHz (12 samples)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | ..............................
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | . Timing measurements:
[2025-11-26 05:46:29] 2025-11-26 04:45:41,175 | INFO     | . get job = 0 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | . initial setup = 1 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | . payload setup = 2 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | . stage-in = 0 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | . payload execution = 15859 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | . stage-out = 1 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | . log creation = 0 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,176 | INFO     | ..............................
[2025-11-26 05:46:29] 2025-11-26 04:45:41,254 | INFO     | 
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | job summary report
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | --------------------------------------------------
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | PanDA job id: 6895374677
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | task id: 47556137
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | errors: (none)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | pilot state: finished 
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | transexitcode: 0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | exeerrorcode: 0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | exeerrordiag: 
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | exitcode: 0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | exitmsg: OK
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | cpuconsumptiontime: 120707 s
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | nevents: 1000
[2025-11-26 05:46:29] 2025-11-26 04:45:41,255 | INFO     | neventsw: 0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | pid: 31193
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | pgrp: 31193
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | corecount: 8
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | event service: False
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | sizes: {0: 2284441, 2: 2284703, 11: 2284731, 15866: 2317036, 15867: 2326060, 15868: 2326116, 15871: 2326490}
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | --------------------------------------------------
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | 
[2025-11-26 05:46:29] 2025-11-26 04:45:41,256 | INFO     | executing command: ls -lF /tmp/job_10924907/atlas/pilot/slots/0
[2025-11-26 05:46:29] 2025-11-26 04:45:41,264 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,264 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,264 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | job 6895374677 has completed (purged errors)
[2025-11-26 05:46:29] 2025-11-26 04:45:41,265 | INFO     | overall cleanup function is called
[2025-11-26 05:46:29] 2025-11-26 04:45:42,272 | INFO     | --- collectZombieJob: --- 10, [31193]
[2025-11-26 05:46:29] 2025-11-26 04:45:42,273 | INFO     | zombie collector waiting for pid 31193
[2025-11-26 05:46:29] 2025-11-26 04:45:42,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:46:29] 2025-11-26 04:45:42,273 | INFO     | collected zombie processes
[2025-11-26 05:46:29] 2025-11-26 04:45:42,273 | INFO     | will attempt to kill all subprocesses of pid=31193
[2025-11-26 05:46:29] 2025-11-26 04:45:42,377 | INFO     | process IDs to be killed: [31193] (in reverse order)
[2025-11-26 05:46:29] 2025-11-26 04:45:42,414 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:46:29] 2025-11-26 04:45:42,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:46:29] 2025-11-26 04:45:42,418 | INFO     | did not find any defunct processes belonging to 31193
[2025-11-26 05:46:29] 2025-11-26 04:45:42,421 | INFO     | did not find any defunct processes belonging to 31193
[2025-11-26 05:46:29] 2025-11-26 04:45:42,421 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:46:29] 2025-11-26 04:45:42,422 | INFO     | ready for new job
[2025-11-26 05:46:29] 2025-11-26 04:45:42,422 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:46:29] 2025-11-26 04:45:42,422 | INFO     | ***************************************
[2025-11-26 05:46:29] 2025-11-26 04:45:42,423 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:46:29] 2025-11-26 04:45:42,423 | INFO     | ***************************************
[2025-11-26 05:46:29] 2025-11-26 04:45:42,423 | INFO     | 
[2025-11-26 05:46:29] 2025-11-26 04:45:42,436 | INFO     | architecture information:
[2025-11-26 05:46:29] 2025-11-26 04:45:42,436 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:46:29] 2025-11-26 04:45:42,441 | INFO     | cat /etc/os-release:
[2025-11-26 05:46:29] NAME="CentOS Linux"
[2025-11-26 05:46:29] VERSION="7 (Core)"
[2025-11-26 05:46:29] ID="centos"
[2025-11-26 05:46:29] ID_LIKE="rhel fedora"
[2025-11-26 05:46:29] VERSION_ID="7"
[2025-11-26 05:46:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:46:29] ANSI_COLOR="0;31"
[2025-11-26 05:46:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:46:29] HOME_URL="https://www.centos.org/"
[2025-11-26 05:46:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:46:29] 
[2025-11-26 05:46:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:46:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:46:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:46:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:46:29] 
[2025-11-26 05:46:29] 2025-11-26 04:45:42,442 | INFO     | ***************************************
[2025-11-26 05:46:29] 2025-11-26 04:45:42,944 | INFO     | executing command: df -mP /tmp/job_10924907/atlas/pilot/slots/0
[2025-11-26 05:46:29] 2025-11-26 04:45:42,951 | INFO     | sufficient remaining disk space (222447009792 B)
[2025-11-26 05:46:29] 2025-11-26 04:45:42,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:46:29] 2025-11-26 04:45:42,951 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:46:29] 2025-11-26 04:45:42,951 | INFO     | update_server=False
[2025-11-26 05:46:29] 2025-11-26 04:45:42,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:46:29] 2025-11-26 04:45:42,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:46:29] 2025-11-26 04:45:43,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:46:29] 2025-11-26 04:45:43,280 | INFO     | all job control threads have been joined
[2025-11-26 05:46:29] 2025-11-26 04:45:43,614 | INFO     | all data control threads have been joined
[2025-11-26 05:46:29] 2025-11-26 04:45:43,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:46:29] 2025-11-26 04:45:43,759 | INFO     | aborting loop
[2025-11-26 05:46:29] 2025-11-26 04:45:43,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:46:29] 2025-11-26 04:45:43,956 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:43,956 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,234 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,286 | INFO     | [job] control thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,316 | INFO     | all payload control threads have been joined
[2025-11-26 05:46:29] 2025-11-26 04:45:44,317 | INFO     | [job] validate thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,504 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,620 | INFO     | [data] control thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,661 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,661 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,764 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,855 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:44,879 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:45,038 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:45,297 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:45,321 | INFO     | [payload] control thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:45:47,823 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:46:29] 2025-11-26 04:46:13,183 | INFO     | PID=11407 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 05:46:29] 2025-11-26 04:46:13,183 | INFO     | .. there are 4 such processes running
[2025-11-26 05:46:29] 2025-11-26 04:46:13,183 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:46:29] 2025-11-26 04:46:13,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:46:29] 2025-11-26 04:46:13,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:46:29] 2025-11-26 04:46:24,085 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:46:29] 2025-11-26 04:46:24,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-26 05:46:29] 2025-11-26 04:46:24,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:46:29] 2025-11-26 04:46:24,238 | INFO     | [monitor] control thread has ended
[2025-11-26 05:46:29] 2025-11-26 04:46:29,122 | INFO     | all workflow threads have been joined
[2025-11-26 05:46:29] 2025-11-26 04:46:29,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:46:29] 2025-11-26 04:46:29,122 | INFO     | traces error code: 0
[2025-11-26 05:46:29] 2025-11-26 04:46:29,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:46:29] 2025-11-26 04:46:29,167 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:46:29] 2025-11-26 04:46:29,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:46:29] 2025-11-26 04:46:29,170 [wrapper] pilotpid: 11407
[2025-11-26 05:46:29] 2025-11-26 04:46:29,171 [wrapper] Pilot exit status: 0
[2025-11-26 05:46:29] 2025-11-26 04:46:29,175 [wrapper] pandaids: 6895374677
[2025-11-26 05:46:29] 2025-11-26 04:46:29,199 [wrapper] cleanup supervisor_pilot 24307 11409
[2025-11-26 05:46:29] 2025-11-26 04:46:29,200 [wrapper] Test setup, not cleaning
[2025-11-26 05:46:29] 2025-11-26 04:46:29,202 [wrapper] apfmon messages muted
[2025-11-26 05:46:29] 2025-11-26 04:46:29,203 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:46:29] 2025-11-26 04:46:29,204 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:46:29]  *** Error codes and diagnostics ***
[2025-11-26 05:46:29]     "exeErrorCode": 0,
[2025-11-26 05:46:29]     "exeErrorDiag": "",
[2025-11-26 05:46:29]     "pilotErrorCode": 0,
[2025-11-26 05:46:29]     "pilotErrorDiag": "",
[2025-11-26 05:46:29]  *** Listing of results directory ***
[2025-11-26 05:46:29] total 1302872
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user    576529 Nov 24 00:11 pilot3.tar.gz
[2025-11-26 05:46:29] -rwx------ 1 mf493845 unix-user     36292 Nov 24 00:26 runpilot2-wrapper.sh
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      5112 Nov 24 00:26 queuedata.json
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user       100 Nov 25 23:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:46:29] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 25 23:36 run_atlas
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user       105 Nov 25 23:36 job.xml
[2025-11-26 05:46:29] -rw-r--r-- 2 mf493845 unix-user 408589303 Nov 26 01:20 EVNT.47483658._000944.pool.root.1
[2025-11-26 05:46:29] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 26 01:20 start_atlas.sh
[2025-11-26 05:46:29] drwxrwx--x 2 mf493845 unix-user       100 Nov 26 01:20 shared
[2025-11-26 05:46:29] -rw-r--r-- 2 mf493845 unix-user    590102 Nov 26 01:20 input.tar.gz
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      6391 Nov 26 01:20 init_data.xml
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user         0 Nov 26 01:20 boinc_setup_complete
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      8192 Nov 26 01:20 boinc_mmap_file
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user         0 Nov 26 01:20 boinc_lockfile
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      2786 Nov 26 01:20 pandaJob.out
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user    991877 Nov 26 01:20 agis_schedconf.cvmfs.json
[2025-11-26 05:46:29] drwx------ 5 mf493845 unix-user       440 Nov 26 01:20 pilot3
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user 913957706 Nov 26 05:45 HITS.47556137._009306.pool.root.1
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      1024 Nov 26 05:45 memory_monitor_summary.json
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user   1516240 Nov 26 05:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user   1559788 Nov 26 05:45 log.47556137._009306.job.log.tgz.1
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      8591 Nov 26 05:45 heartbeat.json
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user        95 Nov 26 05:46 pilot_heartbeat.json
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      4835 Nov 26 05:46 pilotlog.txt
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user   2291957 Nov 26 05:46 log.47556137._009306.job.log.1
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user       353 Nov 26 05:46 output.list
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user       620 Nov 26 05:46 runtime_log
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user   3870720 Nov 26 05:46 result.tar.gz
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user      9221 Nov 26 05:46 runtime_log.err
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user       651 Nov 26 05:46 JR5KDmjeYh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUHLKDmYRGawm.diag
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user     21675 Nov 26 05:46 stderr.txt
[2025-11-26 05:46:29] HITS file was successfully produced:
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user 913957706 Nov 26 05:45 shared/HITS.pool.root.1
[2025-11-26 05:46:29]  *** Contents of shared directory: ***
[2025-11-26 05:46:29] total 1295932
[2025-11-26 05:46:29] -rw-r--r-- 2 mf493845 unix-user 408589303 Nov 26 01:20 ATLAS.root_0
[2025-11-26 05:46:29] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 26 01:20 start_atlas.sh
[2025-11-26 05:46:29] -rw-r--r-- 2 mf493845 unix-user    590102 Nov 26 01:20 input.tar.gz
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user 913957706 Nov 26 05:45 HITS.pool.root.1
[2025-11-26 05:46:29] -rw------- 1 mf493845 unix-user   3870720 Nov 26 05:46 result.tar.gz
05:46:30 (4943): run_atlas exited; CPU time 120926.792950
05:46:30 (4943): called boinc_finish(0)

</stderr_txt>
]]>

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