Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:44:57 (19023): wrapper (7.7.26015): starting
23:44:57 (19023): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 23:44:57] Arguments: --nthreads 8
[2025-11-27 23:44:57] Threads: 8
[2025-11-27 23:44:57] Checking for CVMFS
[2025-11-27 23:44:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 23:44:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 23:44:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 23:45:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 23:45:00] 2.11.2.0 19872 287274 140656 153387 1 85 24653445 25165824 1288 130560 25 122045042 99.874 77982018 2586 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 23:45:00] CVMFS is ok
[2025-11-27 23:45:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 23:45:00] Checking for apptainer binary...
[2025-11-27 23:45:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 23:45:00] Running /usr/bin/apptainer --version
[2025-11-27 23:45:00] apptainer version 1.3.2-1.el7
[2025-11-27 23:45:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 23:45:03] cg-vwn350.simple-grid.lan
[2025-11-27 23:45:03] apptainer works
[2025-11-27 23:45:03] Set ATHENA_PROC_NUMBER=8
[2025-11-27 23:45:03] Set ATHENA_CORE_NUMBER=8
[2025-11-27 23:45:03] Starting ATLAS job with PandaID=6896255472
[2025-11-27 23:45:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 22:49:33]  *** The last 200 lines of the pilot log: ***
[2025-11-28 22:49:33] 2025-11-28 21:48:46,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:49:33] 2025-11-28 21:48:47,526 | INFO     | time since job start (82795s) is within the limit (172800.0s)
[2025-11-28 22:49:33] 2025-11-28 21:48:48,879 | INFO     | monitor loop #5590: job 0:6896255472 is in state 'finished'
[2025-11-28 22:49:33] 2025-11-28 21:48:48,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:49:33] 2025-11-28 21:48:49,535 | INFO     | time since job start (82797s) is within the limit (172800.0s)
[2025-11-28 22:49:33] 2025-11-28 21:48:51,387 | INFO     | monitor loop #5591: job 0:6896255472 is in state 'finished'
[2025-11-28 22:49:33] 2025-11-28 21:48:51,388 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:49:33] 2025-11-28 21:48:51,542 | INFO     | time since job start (82799s) is within the limit (172800.0s)
[2025-11-28 22:49:33] 2025-11-28 21:48:53,550 | INFO     | time since job start (82801s) is within the limit (172800.0s)
[2025-11-28 22:49:33] 2025-11-28 21:48:53,896 | INFO     | monitor loop #5592: job 0:6896255472 is in state 'finished'
[2025-11-28 22:49:33] 2025-11-28 21:48:53,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:49:33] 2025-11-28 21:48:54,777 | INFO     | PID=22825 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 22:49:33] 2025-11-28 21:48:54,778 | INFO     | .. there are 9 such processes running
[2025-11-28 22:49:33] 2025-11-28 21:48:55,778 | INFO     | time since job start (82803s) is within the limit (172800.0s)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,348 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 22:49:33] 2025-11-28 21:48:56,350 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 22:49:33] 2025-11-28 21:48:56,352 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6896255472/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,353 | INFO     | extracted standard info from prmon json
[2025-11-28 22:49:33] 2025-11-28 21:48:56,353 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 22:49:33] 2025-11-28 21:48:56,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 22:49:33] 2025-11-28 21:48:56,377 | INFO     | fitting pss+swap vs Time
[2025-11-28 22:49:33] 2025-11-28 21:48:56,380 | INFO     | sum of square deviations: 759534707362.8302
[2025-11-28 22:49:33] 2025-11-28 21:48:56,401 | INFO     | monitor loop #5593: job 0:6896255472 is in state 'finished'
[2025-11-28 22:49:33] 2025-11-28 21:48:56,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,470 | INFO     | sum of deviations: 3213917507939.729
[2025-11-28 22:49:33] 2025-11-28 21:48:56,470 | INFO     | mean x: 1764325335.5949554
[2025-11-28 22:49:33] 2025-11-28 21:48:56,471 | INFO     | mean y: 2834044.6661721068
[2025-11-28 22:49:33] 2025-11-28 21:48:56,471 | INFO     | intersect: -7462784090.755668
[2025-11-28 22:49:33] 2025-11-28 21:48:56,472 | INFO     | chi2: 24.647175955506356
[2025-11-28 22:49:33] 2025-11-28 21:48:56,481 | INFO     | sum of square deviations: 751114664771.829
[2025-11-28 22:49:33] 2025-11-28 21:48:56,543 | INFO     | sum of deviations: 3656056717575.009
[2025-11-28 22:49:33] 2025-11-28 21:48:56,543 | INFO     | mean x: 1764325183.099032
[2025-11-28 22:49:33] 2025-11-28 21:48:56,543 | INFO     | mean y: 2842051.473566642
[2025-11-28 22:49:33] 2025-11-28 21:48:56,543 | INFO     | intersect: -8585025074.79999
[2025-11-28 22:49:33] 2025-11-28 21:48:56,545 | INFO     | chi2: 21.447291779669392
[2025-11-28 22:49:33] 2025-11-28 21:48:56,545 | INFO     | current chi2=21.447291779669392 (change=12.982761926207967 %)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,545 | INFO     | right removable region: 1342
[2025-11-28 22:49:33] 2025-11-28 21:48:56,547 | INFO     | sum of square deviations: 751113764411.828
[2025-11-28 22:49:33] 2025-11-28 21:48:56,614 | INFO     | sum of deviations: 2650324710348.3257
[2025-11-28 22:49:33] 2025-11-28 21:48:56,614 | INFO     | mean x: 1764325488.099032
[2025-11-28 22:49:33] 2025-11-28 21:48:56,614 | INFO     | mean y: 2844250.7192851827
[2025-11-28 22:49:33] 2025-11-28 21:48:56,614 | INFO     | intersect: -6222624725.831666
[2025-11-28 22:49:33] 2025-11-28 21:48:56,616 | INFO     | chi2: 19.935298744216645
[2025-11-28 22:49:33] 2025-11-28 21:48:56,616 | INFO     | current chi2=19.935298744216645 (change=19.117310720691485 %)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,616 | INFO     | left removable region: 10
[2025-11-28 22:49:33] 2025-11-28 21:48:56,618 | INFO     | sum of square deviations: 732808324235.4325
[2025-11-28 22:49:33] 2025-11-28 21:48:56,674 | INFO     | sum of deviations: 2715521679974.949
[2025-11-28 22:49:33] 2025-11-28 21:48:56,675 | INFO     | mean x: 1764325457.608108
[2025-11-28 22:49:33] 2025-11-28 21:48:56,675 | INFO     | mean y: 2862929.375375375
[2025-11-28 22:49:33] 2025-11-28 21:48:56,675 | INFO     | intersect: -6535086862.154687
[2025-11-28 22:49:33] 2025-11-28 21:48:56,677 | INFO     | chi2: 12.62461348967496
[2025-11-28 22:49:33] 2025-11-28 21:48:56,677 | INFO     | current memory leak: 3.71 B/s (using 1332 data points, chi2=12.62)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,678 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,678 | INFO     | ..............................
[2025-11-28 22:49:33] 2025-11-28 21:48:56,678 | INFO     | . Timing measurements:
[2025-11-28 22:49:33] 2025-11-28 21:48:56,678 | INFO     | . get job = 0 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,678 | INFO     | . initial setup = 9 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,679 | INFO     | . payload setup = 169 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,679 | INFO     | . stage-in = 0 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,679 | INFO     | . payload execution = 82326 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,679 | INFO     | . stage-out = 5 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,679 | INFO     | . log creation = 2 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,679 | INFO     | ..............................
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | 
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | job summary report
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | --------------------------------------------------
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | PanDA job id: 6896255472
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | task id: 47556149
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | errors: (none)
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 22:49:33] 2025-11-28 21:48:56,792 | INFO     | pilot state: finished 
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | transexitcode: 0
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | exeerrorcode: 0
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | exeerrordiag: 
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | exitcode: 0
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | exitmsg: OK
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | cpuconsumptiontime: 313147 s
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | nevents: 1000
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | neventsw: 0
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | pid: 29401
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | pgrp: 29401
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | corecount: 8
[2025-11-28 22:49:33] 2025-11-28 21:48:56,793 | INFO     | event service: False
[2025-11-28 22:49:33] 2025-11-28 21:48:56,794 | INFO     | sizes: {0: 2283436, 1: 2284122, 2: 2284321, 3: 2284349, 13: 2284349, 24: 2284405, 35: 2284561, 46: 2284589, 56: 2284617, 67: 2284645, 78: 2284673, 88: 2285009, 99:
[2025-11-28 22:49:33] 2025-11-28 21:48:56,794 | INFO     | --------------------------------------------------
[2025-11-28 22:49:33] 2025-11-28 21:48:56,794 | INFO     | 
[2025-11-28 22:49:33] 2025-11-28 21:48:56,794 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-11-28 22:49:33] 2025-11-28 21:48:57,344 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,344 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,344 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 22:49:33] 2025-11-28 21:48:57,346 | INFO     | job 6896255472 has completed (purged errors)
[2025-11-28 22:49:33] 2025-11-28 21:48:57,347 | INFO     | overall cleanup function is called
[2025-11-28 22:49:33] 2025-11-28 21:48:58,362 | INFO     | --- collectZombieJob: --- 10, [29401]
[2025-11-28 22:49:33] 2025-11-28 21:48:58,363 | INFO     | zombie collector waiting for pid 29401
[2025-11-28 22:49:33] 2025-11-28 21:48:58,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 22:49:33] 2025-11-28 21:48:58,363 | INFO     | collected zombie processes
[2025-11-28 22:49:33] 2025-11-28 21:48:58,363 | INFO     | will attempt to kill all subprocesses of pid=29401
[2025-11-28 22:49:33] 2025-11-28 21:48:58,497 | INFO     | process IDs to be killed: [29401] (in reverse order)
[2025-11-28 22:49:33] 2025-11-28 21:48:59,375 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 22:49:33] 2025-11-28 21:48:59,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 22:49:33] 2025-11-28 21:48:59,378 | INFO     | did not find any defunct processes belonging to 29401
[2025-11-28 22:49:33] 2025-11-28 21:48:59,381 | INFO     | did not find any defunct processes belonging to 29401
[2025-11-28 22:49:33] 2025-11-28 21:48:59,438 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 22:49:33] 2025-11-28 21:48:59,438 | INFO     | ready for new job
[2025-11-28 22:49:33] 2025-11-28 21:48:59,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 22:49:33] 2025-11-28 21:48:59,443 | INFO     | ***************************************
[2025-11-28 22:49:33] 2025-11-28 21:48:59,443 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 22:49:33] 2025-11-28 21:48:59,444 | INFO     | ***************************************
[2025-11-28 22:49:33] 2025-11-28 21:48:59,444 | INFO     | 
[2025-11-28 22:49:33] 2025-11-28 21:48:59,444 | INFO     | pilot is running in a VM
[2025-11-28 22:49:33] 2025-11-28 21:48:59,445 | INFO     | architecture information:
[2025-11-28 22:49:33] 2025-11-28 21:48:59,460 | INFO     | executing command: cat /etc/os-release
[2025-11-28 22:49:33] 2025-11-28 21:48:59,738 | INFO     | cat /etc/os-release:
[2025-11-28 22:49:33] NAME="CentOS Linux"
[2025-11-28 22:49:33] VERSION="7 (Core)"
[2025-11-28 22:49:33] ID="centos"
[2025-11-28 22:49:33] ID_LIKE="rhel fedora"
[2025-11-28 22:49:33] VERSION_ID="7"
[2025-11-28 22:49:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 22:49:33] ANSI_COLOR="0;31"
[2025-11-28 22:49:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 22:49:33] HOME_URL="https://www.centos.org/"
[2025-11-28 22:49:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 22:49:33] 
[2025-11-28 22:49:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 22:49:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 22:49:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 22:49:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 22:49:33] 
[2025-11-28 22:49:33] 2025-11-28 21:48:59,738 | INFO     | ***************************************
[2025-11-28 22:49:33] 2025-11-28 21:49:00,242 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-11-28 22:49:33] 2025-11-28 21:49:00,557 | INFO     | sufficient remaining disk space (495492005888 B)
[2025-11-28 22:49:33] 2025-11-28 21:49:00,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 22:49:33] 2025-11-28 21:49:00,558 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 22:49:33] 2025-11-28 21:49:00,558 | INFO     | update_server=False
[2025-11-28 22:49:33] 2025-11-28 21:49:00,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 22:49:33] 2025-11-28 21:49:00,558 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 22:49:33] 2025-11-28 21:49:00,559 | INFO     | aborting loop
[2025-11-28 22:49:33] 2025-11-28 21:49:00,932 | INFO     | all data control threads have been joined
[2025-11-28 22:49:33] 2025-11-28 21:49:01,345 | INFO     | all job control threads have been joined
[2025-11-28 22:49:33] 2025-11-28 21:49:01,564 | INFO     | [job] retrieve thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:01,565 | INFO     | [job] job monitor thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:01,575 | INFO     | [job] validate thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:01,672 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:01,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 22:49:33] 2025-11-28 21:49:01,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 22:49:33] 2025-11-28 21:49:01,842 | INFO     | all payload control threads have been joined
[2025-11-28 22:49:33] 2025-11-28 21:49:01,939 | INFO     | [data] control thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,076 | INFO     | [payload] failed_post thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 22:49:33] 2025-11-28 21:49:02,352 | INFO     | [job] control thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,536 | INFO     | [payload] validate_post thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,600 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,601 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,812 | INFO     | [job] queue monitor thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,848 | INFO     | [payload] control thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:02,917 | INFO     | [data] copytool_in thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:03,710 | INFO     | [data] copytool_out thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:06,175 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 22:49:33] 2025-11-28 21:49:15,830 | INFO     | [monitor] cgroup control has ended
[2025-11-28 22:49:33] 2025-11-28 21:49:17,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672655992640)>', '<ExcThread(monitor, started 139671925417728)>']
[2025-11-28 22:49:33] 2025-11-28 21:49:22,265 | INFO     | all workflow threads have been joined
[2025-11-28 22:49:33] 2025-11-28 21:49:22,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 22:49:33] 2025-11-28 21:49:22,266 | INFO     | traces error code: 0
[2025-11-28 22:49:33] 2025-11-28 21:49:22,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 22:49:33] 2025-11-28 21:49:28,981 | INFO     | PID=22825 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 22:49:33] 2025-11-28 21:49:28,981 | INFO     | .. there are 9 such processes running
[2025-11-28 22:49:33] 2025-11-28 21:49:28,983 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 22:49:33] 2025-11-28 21:49:28,983 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 22:49:33] 2025-11-28 21:49:28,983 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 22:49:33] 2025-11-28 21:49:28,983 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 22:49:33] 2025-11-28 21:49:28,983 | INFO     | [monitor] control thread has ended
[2025-11-28 22:49:33] 2025-11-28 21:49:29,182 [wrapper] ==== pilot stdout END ====
[2025-11-28 22:49:33] 2025-11-28 21:49:29,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 22:49:33] 2025-11-28 21:49:29,230 [wrapper] pilotpid: 22825
[2025-11-28 22:49:33] 2025-11-28 21:49:29,258 [wrapper] Pilot exit status: 0
[2025-11-28 22:49:33] 2025-11-28 21:49:29,594 [wrapper] pandaids: 6896255472
[2025-11-28 22:49:33] 2025-11-28 21:49:29,953 [wrapper] cleanup supervisor_pilot 27029 22826
[2025-11-28 22:49:33] 2025-11-28 21:49:30,058 [wrapper] Test setup, not cleaning
[2025-11-28 22:49:33] 2025-11-28 21:49:30,144 [wrapper] apfmon messages muted
[2025-11-28 22:49:33] 2025-11-28 21:49:30,232 [wrapper] ==== wrapper stdout END ====
[2025-11-28 22:49:33] 2025-11-28 21:49:30,289 [wrapper] ==== wrapper stderr END ====
[2025-11-28 22:49:33]  *** Error codes and diagnostics ***
[2025-11-28 22:49:33]     "exeErrorCode": 0,
[2025-11-28 22:49:33]     "exeErrorDiag": "",
[2025-11-28 22:49:33]     "pilotErrorCode": 0,
[2025-11-28 22:49:33]     "pilotErrorDiag": "",
[2025-11-28 22:49:33]  *** Listing of results directory ***
[2025-11-28 22:49:33] total 1324740
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc      5112 Nov 25 00:16 queuedata.json
[2025-11-28 22:49:33] -rwx------. 1 boinc boinc     36292 Nov 25 00:19 runpilot2-wrapper.sh
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc       100 Nov 27 23:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 22:49:33] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 23:44 run_atlas
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc       105 Nov 27 23:44 job.xml
[2025-11-28 22:49:33] -rw-r--r--. 2 boinc boinc 408058427 Nov 27 23:44 EVNT.47483658._001445.pool.root.1
[2025-11-28 22:49:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:44 start_atlas.sh
[2025-11-28 22:49:33] drwxrwx--x. 2 boinc boinc        68 Nov 27 23:44 shared
[2025-11-28 22:49:33] -rw-r--r--. 2 boinc boinc    611290 Nov 27 23:44 input.tar.gz
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc      6393 Nov 27 23:44 init_data.xml
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc         0 Nov 27 23:44 boinc_lockfile
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc      2785 Nov 27 23:45 pandaJob.out
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc    991532 Nov 27 23:48 agis_schedconf.cvmfs.json
[2025-11-28 22:49:33] drwx------. 7 boinc boinc      4096 Nov 27 23:48 pilot3
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc       533 Nov 28 22:25 boinc_task_state.xml
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc 917413424 Nov 28 22:45 HITS.47556149._004318.pool.root.1
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc      1033 Nov 28 22:47 memory_monitor_summary.json
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc   1516240 Nov 28 22:47 agis_ddmendpoints.agis.ALL.json
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc   2456441 Nov 28 22:47 log.47556149._004318.job.log.tgz.1
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc      8623 Nov 28 22:48 heartbeat.json
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc        29 Nov 28 22:49 wrapper_checkpoint.txt
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc      8192 Nov 28 22:49 boinc_mmap_file
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc        95 Nov 28 22:49 pilot_heartbeat.json
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc       820 Nov 28 22:49 pilotlog.txt
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc  11100274 Nov 28 22:49 log.47556149._004318.job.log.1
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc       353 Nov 28 22:49 output.list
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc       620 Nov 28 22:49 runtime_log
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc  13578240 Nov 28 22:49 result.tar.gz
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc      8833 Nov 28 22:49 runtime_log.err
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc       662 Nov 28 22:49 oKUMDm20uh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZzLKDmaNAZKo.diag
[2025-11-28 22:49:33] -rw-r--r--. 1 boinc boinc     21522 Nov 28 22:49 stderr.txt
[2025-11-28 22:49:33] HITS file was successfully produced:
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc 917413424 Nov 28 22:45 shared/HITS.pool.root.1
[2025-11-28 22:49:33]  *** Contents of shared directory: ***
[2025-11-28 22:49:33] total 1308284
[2025-11-28 22:49:33] -rw-r--r--. 2 boinc boinc 408058427 Nov 27 23:44 ATLAS.root_0
[2025-11-28 22:49:33] -rw-r--r--. 2 boinc boinc     15847 Nov 27 23:44 start_atlas.sh
[2025-11-28 22:49:33] -rw-r--r--. 2 boinc boinc    611290 Nov 27 23:44 input.tar.gz
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc 917413424 Nov 28 22:45 HITS.pool.root.1
[2025-11-28 22:49:33] -rw-------. 1 boinc boinc  13578240 Nov 28 22:49 result.tar.gz
22:49:35 (19023): run_atlas exited; CPU time 313689.444371
22:49:35 (19023): called boinc_finish(0)

</stderr_txt>
]]>

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