Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:22:13 (22847): wrapper (7.7.26015): starting
07:22:13 (22847): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 07:22:13] Arguments: --nthreads 8
[2025-11-28 07:22:13] Threads: 8
[2025-11-28 07:22:13] Checking for CVMFS
[2025-11-28 07:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 07:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 07:22:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 07:22:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 07:22:16] 2.11.2.0 3740 287868 139528 153400 1 84 24888483 25165825 1288 130560 10 133039236 99.874 79388835 2834 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 07:22:16] CVMFS is ok
[2025-11-28 07:22:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 07:22:16] Checking for apptainer binary...
[2025-11-28 07:22:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 07:22:16] Running /usr/bin/apptainer --version
[2025-11-28 07:22:16] apptainer version 1.3.2-1.el7
[2025-11-28 07:22:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 07:22:26] cg-vwn234.simple-grid.lan
[2025-11-28 07:22:26] apptainer works
[2025-11-28 07:22:26] Set ATHENA_PROC_NUMBER=8
[2025-11-28 07:22:26] Set ATHENA_CORE_NUMBER=8
[2025-11-28 07:22:26] Starting ATLAS job with PandaID=6896255428
[2025-11-28 07:22:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 06:58:49]  *** The last 200 lines of the pilot log: ***
[2025-11-29 06:58:49] 2025-11-29 05:57:48,569 | INFO     | PID=26629 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 06:58:49] 2025-11-29 05:57:48,569 | INFO     | .. there are 9 such processes running
[2025-11-29 06:58:49] 2025-11-29 05:57:49,570 | INFO     | time since job start (84696s) is within the limit (172800.0s)
[2025-11-29 06:58:49] 2025-11-29 05:57:50,476 | INFO     | monitor loop #5730: job 0:6896255428 is in state 'finished'
[2025-11-29 06:58:49] 2025-11-29 05:57:50,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:58:49] 2025-11-29 05:57:51,577 | INFO     | time since job start (84698s) is within the limit (172800.0s)
[2025-11-29 06:58:49] 2025-11-29 05:57:52,981 | INFO     | monitor loop #5731: job 0:6896255428 is in state 'finished'
[2025-11-29 06:58:49] 2025-11-29 05:57:52,981 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:58:49] 2025-11-29 05:57:53,584 | INFO     | time since job start (84700s) is within the limit (172800.0s)
[2025-11-29 06:58:49] 2025-11-29 05:57:55,490 | INFO     | monitor loop #5732: job 0:6896255428 is in state 'finished'
[2025-11-29 06:58:49] 2025-11-29 05:57:55,490 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:58:49] 2025-11-29 05:57:55,592 | INFO     | time since job start (84702s) is within the limit (172800.0s)
[2025-11-29 06:58:49] 2025-11-29 05:57:57,607 | INFO     | time since job start (84704s) is within the limit (172800.0s)
[2025-11-29 06:58:49] 2025-11-29 05:57:57,998 | INFO     | monitor loop #5733: job 0:6896255428 is in state 'finished'
[2025-11-29 06:58:49] 2025-11-29 05:57:57,998 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,057 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 06:58:49] 2025-11-29 05:57:59,058 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 06:58:49] 2025-11-29 05:57:59,060 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6896255428/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,061 | INFO     | extracted standard info from prmon json
[2025-11-29 06:58:49] 2025-11-29 05:57:59,061 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 06:58:49] 2025-11-29 05:57:59,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 06:58:49] 2025-11-29 05:57:59,092 | INFO     | fitting pss+swap vs Time
[2025-11-29 06:58:49] 2025-11-29 05:57:59,095 | INFO     | sum of square deviations: 813149815397.7445
[2025-11-29 06:58:49] 2025-11-29 05:57:59,166 | INFO     | sum of deviations: 2550079054558.0796
[2025-11-29 06:58:49] 2025-11-29 05:57:59,166 | INFO     | mean x: 1764353722.0942712
[2025-11-29 06:58:49] 2025-11-29 05:57:59,167 | INFO     | mean y: 2837494.922407542
[2025-11-29 06:58:49] 2025-11-29 05:57:59,167 | INFO     | intersect: -5530265244.999419
[2025-11-29 06:58:49] 2025-11-29 05:57:59,168 | INFO     | chi2: 22.630057065430268
[2025-11-29 06:58:49] 2025-11-29 05:57:59,170 | INFO     | sum of square deviations: 804337301094.2372
[2025-11-29 06:58:49] 2025-11-29 05:57:59,230 | INFO     | sum of deviations: 3004395638050.379
[2025-11-29 06:58:49] 2025-11-29 05:57:59,231 | INFO     | mean x: 1764353569.5982533
[2025-11-29 06:58:49] 2025-11-29 05:57:59,231 | INFO     | mean y: 2845355.326783115
[2025-11-29 06:58:49] 2025-11-29 05:57:59,231 | INFO     | intersect: -6587444764.5871725
[2025-11-29 06:58:49] 2025-11-29 05:57:59,233 | INFO     | chi2: 19.40040193128717
[2025-11-29 06:58:49] 2025-11-29 05:57:59,233 | INFO     | current chi2=19.40040193128717 (change=14.271528899839705 %)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,233 | INFO     | right removable region: 1373
[2025-11-29 06:58:49] 2025-11-29 05:57:59,235 | INFO     | sum of square deviations: 804336380604.2386
[2025-11-29 06:58:49] 2025-11-29 05:57:59,297 | INFO     | sum of deviations: 1994957144940.5352
[2025-11-29 06:58:49] 2025-11-29 05:57:59,297 | INFO     | mean x: 1764353874.5982533
[2025-11-29 06:58:49] 2025-11-29 05:57:59,297 | INFO     | mean y: 2847099.4737991267
[2025-11-29 06:58:49] 2025-11-29 05:57:59,297 | INFO     | intersect: -4373195627.437457
[2025-11-29 06:58:49] 2025-11-29 05:57:59,299 | INFO     | chi2: 18.345402594532054
[2025-11-29 06:58:49] 2025-11-29 05:57:59,299 | INFO     | current chi2=18.345402594532054 (change=18.933467372662808 %)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,299 | INFO     | left removable region: 10
[2025-11-29 06:58:49] 2025-11-29 05:57:59,301 | INFO     | sum of square deviations: 785172557974.3617
[2025-11-29 06:58:49] 2025-11-29 05:57:59,369 | INFO     | sum of deviations: 2088474416888.7808
[2025-11-29 06:58:49] 2025-11-29 05:57:59,370 | INFO     | mean x: 1764353844.1071167
[2025-11-29 06:58:49] 2025-11-29 05:57:59,370 | INFO     | mean y: 2864863.7960381513
[2025-11-29 06:58:49] 2025-11-29 05:57:59,370 | INFO     | intersect: -4690126286.153715
[2025-11-29 06:58:49] 2025-11-29 05:57:59,371 | INFO     | chi2: 11.458833073646462
[2025-11-29 06:58:49] 2025-11-29 05:57:59,372 | INFO     | current memory leak: 2.66 B/s (using 1363 data points, chi2=11.46)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,373 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | ..............................
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . Timing measurements:
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . get job = 0 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . initial setup = 3 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . payload setup = 162 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . stage-in = 0 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . payload execution = 84239 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . stage-out = 8 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | . log creation = 1 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,374 | INFO     | ..............................
[2025-11-29 06:58:49] 2025-11-29 05:57:59,540 | INFO     | 
[2025-11-29 06:58:49] 2025-11-29 05:57:59,540 | INFO     | job summary report
[2025-11-29 06:58:49] 2025-11-29 05:57:59,540 | INFO     | --------------------------------------------------
[2025-11-29 06:58:49] 2025-11-29 05:57:59,540 | INFO     | PanDA job id: 6896255428
[2025-11-29 06:58:49] 2025-11-29 05:57:59,540 | INFO     | task id: 47556161
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | errors: (none)
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | pilot state: finished 
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | transexitcode: 0
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | exeerrorcode: 0
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | exeerrordiag: 
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | exitcode: 0
[2025-11-29 06:58:49] 2025-11-29 05:57:59,541 | INFO     | exitmsg: OK
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | cpuconsumptiontime: 313492 s
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | nevents: 1000
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | neventsw: 0
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | pid: 782
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | pgrp: 782
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | corecount: 8
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | event service: False
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | sizes: {0: 2284143, 1: 2284342, 2: 2284342, 12: 2284370, 23: 2284398, 34: 2284426, 44: 2284582, 55: 2284610, 66: 2284638, 77: 2284666, 87: 2284722, 93: 2285292, 98
[2025-11-29 06:58:49] 2025-11-29 05:57:59,542 | INFO     | --------------------------------------------------
[2025-11-29 06:58:49] 2025-11-29 05:57:59,543 | INFO     | 
[2025-11-29 06:58:49] 2025-11-29 05:57:59,543 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2025-11-29 06:58:49] 2025-11-29 05:57:59,614 | INFO     | time since job start (84706s) is within the limit (172800.0s)
[2025-11-29 06:58:49] 2025-11-29 05:58:00,117 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,117 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,117 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,118 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | job 6896255428 has completed (purged errors)
[2025-11-29 06:58:49] 2025-11-29 05:58:00,119 | INFO     | overall cleanup function is called
[2025-11-29 06:58:49] 2025-11-29 05:58:01,135 | INFO     | --- collectZombieJob: --- 10, [782]
[2025-11-29 06:58:49] 2025-11-29 05:58:01,135 | INFO     | zombie collector waiting for pid 782
[2025-11-29 06:58:49] 2025-11-29 05:58:01,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 06:58:49] 2025-11-29 05:58:01,135 | INFO     | collected zombie processes
[2025-11-29 06:58:49] 2025-11-29 05:58:01,135 | INFO     | will attempt to kill all subprocesses of pid=782
[2025-11-29 06:58:49] 2025-11-29 05:58:01,232 | INFO     | process IDs to be killed: [782] (in reverse order)
[2025-11-29 06:58:49] 2025-11-29 05:58:02,336 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 06:58:49] 2025-11-29 05:58:02,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 06:58:49] 2025-11-29 05:58:02,340 | INFO     | did not find any defunct processes belonging to 782
[2025-11-29 06:58:49] 2025-11-29 05:58:02,343 | INFO     | did not find any defunct processes belonging to 782
[2025-11-29 06:58:49] 2025-11-29 05:58:02,410 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 06:58:49] 2025-11-29 05:58:02,410 | INFO     | ready for new job
[2025-11-29 06:58:49] 2025-11-29 05:58:02,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 06:58:49] 2025-11-29 05:58:02,416 | INFO     | ***************************************
[2025-11-29 06:58:49] 2025-11-29 05:58:02,416 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 06:58:49] 2025-11-29 05:58:02,416 | INFO     | ***************************************
[2025-11-29 06:58:49] 2025-11-29 05:58:02,416 | INFO     | 
[2025-11-29 06:58:49] 2025-11-29 05:58:02,417 | INFO     | pilot is running in a VM
[2025-11-29 06:58:49] 2025-11-29 05:58:02,417 | INFO     | architecture information:
[2025-11-29 06:58:49] 2025-11-29 05:58:02,423 | INFO     | executing command: cat /etc/os-release
[2025-11-29 06:58:49] 2025-11-29 05:58:02,723 | INFO     | cat /etc/os-release:
[2025-11-29 06:58:49] NAME="CentOS Linux"
[2025-11-29 06:58:49] VERSION="7 (Core)"
[2025-11-29 06:58:49] ID="centos"
[2025-11-29 06:58:49] ID_LIKE="rhel fedora"
[2025-11-29 06:58:49] VERSION_ID="7"
[2025-11-29 06:58:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 06:58:49] ANSI_COLOR="0;31"
[2025-11-29 06:58:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 06:58:49] HOME_URL="https://www.centos.org/"
[2025-11-29 06:58:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 06:58:49] 
[2025-11-29 06:58:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 06:58:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 06:58:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 06:58:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 06:58:49] 
[2025-11-29 06:58:49] 2025-11-29 05:58:02,723 | INFO     | ***************************************
[2025-11-29 06:58:49] 2025-11-29 05:58:03,227 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2025-11-29 06:58:49] 2025-11-29 05:58:03,486 | INFO     | sufficient remaining disk space (491905875968 B)
[2025-11-29 06:58:49] 2025-11-29 05:58:03,487 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 06:58:49] 2025-11-29 05:58:03,487 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 06:58:49] 2025-11-29 05:58:03,487 | INFO     | update_server=False
[2025-11-29 06:58:49] 2025-11-29 05:58:03,487 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 06:58:49] 2025-11-29 05:58:03,682 | INFO     | all payload control threads have been joined
[2025-11-29 06:58:49] 2025-11-29 05:58:04,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 06:58:49] 2025-11-29 05:58:04,024 | INFO     | aborting loop
[2025-11-29 06:58:49] 2025-11-29 05:58:04,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 06:58:49] 2025-11-29 05:58:04,424 | INFO     | all data control threads have been joined
[2025-11-29 06:58:49] 2025-11-29 05:58:04,493 | INFO     | [job] retrieve thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:04,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:04,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 06:58:49] 2025-11-29 05:58:04,618 | INFO     | all job control threads have been joined
[2025-11-29 06:58:49] 2025-11-29 05:58:04,688 | INFO     | [payload] control thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:04,797 | INFO     | [payload] validate_post thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:04,914 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,030 | INFO     | [job] job monitor thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,256 | INFO     | [payload] failed_post thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,430 | INFO     | [data] control thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,519 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,543 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,559 | INFO     | [job] queue monitor thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,624 | INFO     | [job] control thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,850 | INFO     | [job] validate thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:05,954 | INFO     | [data] copytool_in thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:06,364 | INFO     | [data] copytool_out thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:06,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 06:58:49] 2025-11-29 05:58:10,446 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 06:58:49] 2025-11-29 05:58:32,822 | INFO     | PID=26629 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-29 06:58:49] 2025-11-29 05:58:32,823 | INFO     | .. there are 9 such processes running
[2025-11-29 06:58:49] 2025-11-29 05:58:32,823 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 06:58:49] 2025-11-29 05:58:32,823 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 06:58:49] 2025-11-29 05:58:32,823 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 06:58:49] 2025-11-29 05:58:40,265 | INFO     | [monitor] cgroup control has ended
[2025-11-29 06:58:49] 2025-11-29 05:58:41,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140607814416192)>', '<ExcThread(monitor, started 140607154546432)>']
[2025-11-29 06:58:49] 2025-11-29 05:58:41,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 06:58:49] 2025-11-29 05:58:41,877 | INFO     | [monitor] control thread has ended
[2025-11-29 06:58:49] 2025-11-29 05:58:46,235 | INFO     | all workflow threads have been joined
[2025-11-29 06:58:49] 2025-11-29 05:58:46,235 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 06:58:49] 2025-11-29 05:58:46,235 | INFO     | traces error code: 0
[2025-11-29 06:58:49] 2025-11-29 05:58:46,236 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 06:58:49] 2025-11-29 05:58:46,626 [wrapper] ==== pilot stdout END ====
[2025-11-29 06:58:49] 2025-11-29 05:58:46,735 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 06:58:49] 2025-11-29 05:58:46,823 [wrapper] pilotpid: 26629
[2025-11-29 06:58:49] 2025-11-29 05:58:46,889 [wrapper] Pilot exit status: 0
[2025-11-29 06:58:49] 2025-11-29 05:58:47,142 [wrapper] pandaids: 6896255428
[2025-11-29 06:58:49] 2025-11-29 05:58:47,462 [wrapper] cleanup supervisor_pilot  5850 26630
[2025-11-29 06:58:49] 2025-11-29 05:58:47,540 [wrapper] Test setup, not cleaning
[2025-11-29 06:58:49] 2025-11-29 05:58:47,646 [wrapper] apfmon messages muted
[2025-11-29 06:58:49] 2025-11-29 05:58:47,735 [wrapper] ==== wrapper stdout END ====
[2025-11-29 06:58:49] 2025-11-29 05:58:47,822 [wrapper] ==== wrapper stderr END ====
[2025-11-29 06:58:49]  *** Error codes and diagnostics ***
[2025-11-29 06:58:49]     "exeErrorCode": 0,
[2025-11-29 06:58:49]     "exeErrorDiag": "",
[2025-11-29 06:58:49]     "pilotErrorCode": 0,
[2025-11-29 06:58:49]     "pilotErrorDiag": "",
[2025-11-29 06:58:49]  *** Listing of results directory ***
[2025-11-29 06:58:49] total 1324668
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc    576529 Nov 24 23:04 pilot3.tar.gz
[2025-11-29 06:58:49] -rwx------. 1 boinc boinc     36292 Nov 24 23:57 runpilot2-wrapper.sh
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc      5112 Nov 24 23:57 queuedata.json
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc       100 Nov 28 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 06:58:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 07:22 run_atlas
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc       105 Nov 28 07:22 job.xml
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc      6393 Nov 28 07:22 init_data.xml
[2025-11-29 06:58:49] -rw-r--r--. 2 boinc boinc 410081328 Nov 28 07:22 EVNT.47483658._002068.pool.root.1
[2025-11-29 06:58:49] -rw-r--r--. 2 boinc boinc     15847 Nov 28 07:22 start_atlas.sh
[2025-11-29 06:58:49] drwxrwx--x. 2 boinc boinc        68 Nov 28 07:22 shared
[2025-11-29 06:58:49] -rw-r--r--. 2 boinc boinc    590093 Nov 28 07:22 input.tar.gz
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc         0 Nov 28 07:22 boinc_lockfile
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc      2785 Nov 28 07:22 pandaJob.out
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc    991866 Nov 28 07:26 agis_schedconf.cvmfs.json
[2025-11-29 06:58:49] drwx------. 5 boinc boinc      4096 Nov 28 07:26 pilot3
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc       533 Nov 29 06:31 boinc_task_state.xml
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc 914950402 Nov 29 06:54 HITS.47556161._000520.pool.root.1
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc      1033 Nov 29 06:56 memory_monitor_summary.json
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc   1516240 Nov 29 06:56 agis_ddmendpoints.agis.ALL.json
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc   2471856 Nov 29 06:56 log.47556161._000520.job.log.tgz.1
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc        95 Nov 29 06:57 pilot_heartbeat.json
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc      8625 Nov 29 06:57 heartbeat.json
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc      8192 Nov 29 06:58 boinc_mmap_file
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc        29 Nov 29 06:58 wrapper_checkpoint.txt
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc      4885 Nov 29 06:58 pilotlog.txt
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc  11288300 Nov 29 06:58 log.47556161._000520.job.log.1
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc       353 Nov 29 06:58 output.list
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc       620 Nov 29 06:58 runtime_log
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc  13783040 Nov 29 06:58 result.tar.gz
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc      8833 Nov 29 06:58 runtime_log.err
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc       662 Nov 29 06:58 P2vMDmnfuh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEzLKDmaxdTSo.diag
[2025-11-29 06:58:49] -rw-r--r--. 1 boinc boinc     21495 Nov 29 06:58 stderr.txt
[2025-11-29 06:58:49] HITS file was successfully produced:
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc 914950402 Nov 29 06:54 shared/HITS.pool.root.1
[2025-11-29 06:58:49]  *** Contents of shared directory: ***
[2025-11-29 06:58:49] total 1308036
[2025-11-29 06:58:49] -rw-r--r--. 2 boinc boinc 410081328 Nov 28 07:22 ATLAS.root_0
[2025-11-29 06:58:49] -rw-r--r--. 2 boinc boinc     15847 Nov 28 07:22 start_atlas.sh
[2025-11-29 06:58:49] -rw-r--r--. 2 boinc boinc    590093 Nov 28 07:22 input.tar.gz
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc 914950402 Nov 29 06:54 HITS.pool.root.1
[2025-11-29 06:58:49] -rw-------. 1 boinc boinc  13783040 Nov 29 06:58 result.tar.gz
06:58:51 (22847): run_atlas exited; CPU time 314068.927959
06:58:51 (22847): called boinc_finish(0)

</stderr_txt>
]]>

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