Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:00:22 (1548649): wrapper (7.7.26015): starting
16:00:22 (1548649): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:00:22] Arguments: --nthreads 8
[2025-11-25 16:00:22] Threads: 8
[2025-11-25 16:00:22] Checking for CVMFS
[2025-11-25 16:00:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:00:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:00:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:00:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:00:24] 2.13.3.0 11830 28988 377460 153297 3 349 31567396 32935936 40602 16776704 0 157644404 99.562 170468699 33148 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:00:24] CVMFS is ok
[2025-11-25 16:00:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:00:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:00:24] Further information can be found at the LHC@home message board.
[2025-11-25 16:00:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:00:24] Checking for apptainer binary...
[2025-11-25 16:00:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:00:24] Running /usr/bin/apptainer --version
[2025-11-25 16:00:25] apptainer version 1.4.4-1.el9
[2025-11-25 16:00:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:00:25] c6-8-25-1.aglt2.org
[2025-11-25 16:00:25] apptainer works
[2025-11-25 16:00:25] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:00:25] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:00:25] Starting ATLAS job with PandaID=6896255055
[2025-11-25 16:00:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:56:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:56:55] 2025-11-27 01:56:01,692 | INFO     | monitor loop #5445: job 0:6896255055 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-27 01:56:01,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-27 01:56:02,646 | INFO     | time since job start (104077s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-27 01:56:04,198 | INFO     | monitor loop #5446: job 0:6896255055 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-27 01:56:04,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-27 01:56:04,666 | INFO     | time since job start (104079s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-27 01:56:06,691 | INFO     | time since job start (104081s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-27 01:56:06,718 | INFO     | monitor loop #5447: job 0:6896255055 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-27 01:56:06,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-27 01:56:08,702 | INFO     | time since job start (104083s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-27 01:56:09,223 | INFO     | monitor loop #5448: job 0:6896255055 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-27 01:56:09,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-27 01:56:11,770 | INFO     | monitor loop #5449: job 0:6896255055 is in state 'finished'
[2025-11-26 20:56:55] 2025-11-27 01:56:11,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:56:55] 2025-11-27 01:56:12,589 | INFO     | PID=1554342 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:56:55] 2025-11-27 01:56:12,589 | INFO     | .. there are 51 such processes running
[2025-11-26 20:56:55] 2025-11-27 01:56:12,799 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:56:55] 2025-11-27 01:56:12,810 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2604.7050416666657
[2025-11-26 20:56:55] 2025-11-27 01:56:12,850 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896255055/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:56:55] 2025-11-27 01:56:12,855 | INFO     | extracted standard info from prmon json
[2025-11-26 20:56:55] 2025-11-27 01:56:12,855 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:56:55] 2025-11-27 01:56:12,855 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:56:55] 2025-11-27 01:56:12,914 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:56:55] 2025-11-27 01:56:12,921 | INFO     | sum of square deviations: 1534263947641.7158
[2025-11-26 20:56:55] 2025-11-27 01:56:13,051 | INFO     | sum of deviations: 5522372534860.513
[2025-11-26 20:56:55] 2025-11-27 01:56:13,051 | INFO     | mean x: 1764156545.0915494
[2025-11-26 20:56:55] 2025-11-27 01:56:13,051 | INFO     | mean y: 2928725.1954225353
[2025-11-26 20:56:55] 2025-11-27 01:56:13,051 | INFO     | intersect: -6346910666.379091
[2025-11-26 20:56:55] 2025-11-27 01:56:13,058 | INFO     | chi2: 20.70541648516936
[2025-11-26 20:56:55] 2025-11-27 01:56:13,061 | INFO     | sum of square deviations: 1520799961697.0322
[2025-11-26 20:56:55] 2025-11-27 01:56:13,186 | INFO     | sum of deviations: 6094826247456.367
[2025-11-26 20:56:55] 2025-11-27 01:56:13,186 | INFO     | mean x: 1764156392.602119
[2025-11-26 20:56:55] 2025-11-27 01:56:13,186 | INFO     | mean y: 2935207.629193643
[2025-11-26 20:56:55] 2025-11-27 01:56:13,186 | INFO     | intersect: -7067177204.953409
[2025-11-26 20:56:55] 2025-11-27 01:56:13,193 | INFO     | chi2: 17.549744034182634
[2025-11-26 20:56:55] 2025-11-27 01:56:13,193 | INFO     | current chi2=17.549744034182634 (change=15.240806449109748 %)
[2025-11-26 20:56:55] 2025-11-27 01:56:13,193 | INFO     | right removable region: 1698
[2025-11-26 20:56:55] 2025-11-27 01:56:13,200 | INFO     | sum of square deviations: 1520796228497.0317
[2025-11-26 20:56:55] 2025-11-27 01:56:13,346 | INFO     | sum of deviations: 4847460321236.1045
[2025-11-26 20:56:55] 2025-11-27 01:56:13,347 | INFO     | mean x: 1764156697.602119
[2025-11-26 20:56:55] 2025-11-27 01:56:13,347 | INFO     | mean y: 2936367.140670983
[2025-11-26 20:56:55] 2025-11-27 01:56:13,347 | INFO     | intersect: -5620223022.543392
[2025-11-26 20:56:55] 2025-11-27 01:56:13,353 | INFO     | chi2: 16.83455951311984
[2025-11-26 20:56:55] 2025-11-27 01:56:13,354 | INFO     | current chi2=16.83455951311984 (change=18.69490031664948 %)
[2025-11-26 20:56:55] 2025-11-27 01:56:13,354 | INFO     | left removable region: 10
[2025-11-26 20:56:55] 2025-11-27 01:56:13,361 | INFO     | sum of square deviations: 1491449565845.3774
[2025-11-26 20:56:55] 2025-11-27 01:56:13,496 | INFO     | sum of deviations: 5004623384660.81
[2025-11-26 20:56:55] 2025-11-27 01:56:13,497 | INFO     | mean x: 1764156667.1255925
[2025-11-26 20:56:55] 2025-11-27 01:56:13,497 | INFO     | mean y: 2950081.18957346
[2025-11-26 20:56:55] 2025-11-27 01:56:13,497 | INFO     | intersect: -5916753751.033297
[2025-11-26 20:56:55] 2025-11-27 01:56:13,503 | INFO     | chi2: 10.899125088341801
[2025-11-26 20:56:55] 2025-11-27 01:56:13,504 | INFO     | current memory leak: 3.36 B/s (using 1688 data points, chi2=10.90)
[2025-11-26 20:56:55] 2025-11-27 01:56:13,506 | INFO     | could have reported an average CPU frequency of 2638 MHz (60 samples)
[2025-11-26 20:56:55] 2025-11-27 01:56:13,510 | INFO     | ..............................
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . Timing measurements:
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . get job = 0 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . initial setup = 5 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . payload setup = 30 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . stage-in = 0 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . payload execution = 103938 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . stage-out = 18 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | . log creation = 12 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,511 | INFO     | ..............................
[2025-11-26 20:56:55] 2025-11-27 01:56:13,608 | INFO     | time since job start (104088s) is within the limit (172800.0s)
[2025-11-26 20:56:55] 2025-11-27 01:56:13,857 | INFO     | 
[2025-11-26 20:56:55] 2025-11-27 01:56:13,857 | INFO     | job summary report
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | --------------------------------------------------
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | PanDA job id: 6896255055
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | task id: 47556149
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | errors: (none)
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | pilot state: finished 
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | transexitcode: 0
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | exeerrorcode: 0
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | exeerrordiag: 
[2025-11-26 20:56:55] 2025-11-27 01:56:13,858 | INFO     | exitcode: 0
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | exitmsg: OK
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | cpuconsumptiontime: 269995 s
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | nevents: 1000
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | neventsw: 0
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | pid: 1564197
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | pgrp: 1564197
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | corecount: 8
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | event service: False
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284371, 14: 2284371, 25: 2284399, 28: 2284689, 35: 2284845, 103974: 2355877, 103975: 2355876, 103995: 2364926, 103997: 2364982,
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | --------------------------------------------------
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | 
[2025-11-26 20:56:55] 2025-11-27 01:56:13,859 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,007 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:56:55] 2025-11-27 01:56:14,008 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,009 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:56:55] 2025-11-27 01:56:14,009 | INFO     | job 6896255055 has completed (purged errors)
[2025-11-26 20:56:55] 2025-11-27 01:56:14,009 | INFO     | overall cleanup function is called
[2025-11-26 20:56:55] 2025-11-27 01:56:15,073 | INFO     | --- collectZombieJob: --- 10, [1564197]
[2025-11-26 20:56:55] 2025-11-27 01:56:15,074 | INFO     | zombie collector waiting for pid 1564197
[2025-11-26 20:56:55] 2025-11-27 01:56:15,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:56:55] 2025-11-27 01:56:15,074 | INFO     | collected zombie processes
[2025-11-26 20:56:55] 2025-11-27 01:56:15,074 | INFO     | will attempt to kill all subprocesses of pid=1564197
[2025-11-26 20:56:55] 2025-11-27 01:56:16,266 | INFO     | process IDs to be killed: [1564197] (in reverse order)
[2025-11-26 20:56:55] 2025-11-27 01:56:16,654 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:56:55] 2025-11-27 01:56:16,655 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:56:55] 2025-11-27 01:56:16,774 | INFO     | did not find any defunct processes belonging to 1564197
[2025-11-26 20:56:55] 2025-11-27 01:56:16,839 | INFO     | did not find any defunct processes belonging to 1564197
[2025-11-26 20:56:55] 2025-11-27 01:56:16,845 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:56:55] 2025-11-27 01:56:16,845 | INFO     | ready for new job
[2025-11-26 20:56:55] 2025-11-27 01:56:16,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:56:55] 2025-11-27 01:56:16,861 | INFO     | ***************************************
[2025-11-26 20:56:55] 2025-11-27 01:56:16,862 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:56:55] 2025-11-27 01:56:16,862 | INFO     | ***************************************
[2025-11-26 20:56:55] 2025-11-27 01:56:16,862 | INFO     | 
[2025-11-26 20:56:55] 2025-11-27 01:56:16,876 | INFO     | architecture information:
[2025-11-26 20:56:55] 2025-11-27 01:56:16,877 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:56:55] 2025-11-27 01:56:16,974 | INFO     | cat /etc/os-release:
[2025-11-26 20:56:55] NAME="CentOS Linux"
[2025-11-26 20:56:55] VERSION="7 (Core)"
[2025-11-26 20:56:55] ID="centos"
[2025-11-26 20:56:55] ID_LIKE="rhel fedora"
[2025-11-26 20:56:55] VERSION_ID="7"
[2025-11-26 20:56:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:56:55] ANSI_COLOR="0;31"
[2025-11-26 20:56:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:56:55] HOME_URL="https://www.centos.org/"
[2025-11-26 20:56:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:56:55] 
[2025-11-26 20:56:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:56:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:56:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:56:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:56:55] 
[2025-11-26 20:56:55] 2025-11-27 01:56:16,974 | INFO     | ***************************************
[2025-11-26 20:56:55] 2025-11-27 01:56:17,478 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:56:55] 2025-11-27 01:56:17,530 | INFO     | sufficient remaining disk space (66398978048 B)
[2025-11-26 20:56:55] 2025-11-27 01:56:17,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:56:55] 2025-11-27 01:56:17,531 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:56:55] 2025-11-27 01:56:17,531 | INFO     | update_server=False
[2025-11-26 20:56:55] 2025-11-27 01:56:17,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:56:55] 2025-11-27 01:56:17,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-27 01:56:17,837 | INFO     | aborting loop
[2025-11-26 20:56:55] 2025-11-27 01:56:18,227 | INFO     | all data control threads have been joined
[2025-11-26 20:56:55] 2025-11-27 01:56:18,268 | INFO     | all payload control threads have been joined
[2025-11-26 20:56:55] 2025-11-27 01:56:18,536 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:18,679 | INFO     | all job control threads have been joined
[2025-11-26 20:56:55] 2025-11-27 01:56:18,842 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:18,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-27 01:56:18,998 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:18,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-27 01:56:19,064 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,258 | INFO     | [data] control thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,274 | INFO     | [payload] control thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,498 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,622 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,685 | INFO     | [job] control thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:19,891 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:20,030 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:20,056 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:20,056 | INFO     | [job] validate thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:20,840 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:56:55] 2025-11-27 01:56:21,033 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:24,849 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:56:55] 2025-11-27 01:56:38,487 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:56:55] 2025-11-27 01:56:38,504 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140720045602624)>', '<ExcThread(monitor, started 140719402497792)>']
[2025-11-26 20:56:55] 2025-11-27 01:56:43,530 | INFO     | all workflow threads have been joined
[2025-11-26 20:56:55] 2025-11-27 01:56:43,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:56:55] 2025-11-27 01:56:43,547 | INFO     | traces error code: 0
[2025-11-26 20:56:55] 2025-11-27 01:56:43,548 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:56:55] 2025-11-27 01:56:52,221 | INFO     | PID=1554342 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:56:55] 2025-11-27 01:56:52,222 | INFO     | .. there are 51 such processes running
[2025-11-26 20:56:55] 2025-11-27 01:56:52,222 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:56:55] 2025-11-27 01:56:52,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:56:55] 2025-11-27 01:56:52,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:56:55] 2025-11-27 01:56:52,222 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:56:55] 2025-11-27 01:56:52,222 | INFO     | [monitor] control thread has ended
[2025-11-26 20:56:55] 2025-11-27 01:56:53,744 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:56:55] 2025-11-27 01:56:53,758 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:56:55] 2025-11-27 01:56:53,773 [wrapper] pilotpid: 1554342
[2025-11-26 20:56:55] 2025-11-27 01:56:53,785 [wrapper] Pilot exit status: 0
[2025-11-26 20:56:55] 2025-11-27 01:56:53,946 [wrapper] pandaids: 6896255055
[2025-11-26 20:56:55] 2025-11-27 01:56:55,001 [wrapper] cleanup supervisor_pilot 2470620 1554343
[2025-11-26 20:56:55] 2025-11-27 01:56:55,043 [wrapper] Test setup, not cleaning
[2025-11-26 20:56:55] 2025-11-27 01:56:55,095 [wrapper] apfmon messages muted
[2025-11-26 20:56:55] 2025-11-27 01:56:55,161 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:56:55] 2025-11-27 01:56:55,213 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:56:55]  *** Error codes and diagnostics ***
[2025-11-26 20:56:55]     "exeErrorCode": 0,
[2025-11-26 20:56:55]     "exeErrorDiag": "",
[2025-11-26 20:56:55]     "pilotErrorCode": 0,
[2025-11-26 20:56:55]     "pilotErrorDiag": "",
[2025-11-26 20:56:55]  *** Listing of results directory ***
[2025-11-26 20:56:55] total 1347176
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 17:04 pilot3.tar.gz
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 17:45 queuedata.json
[2025-11-26 20:56:55] -rwx------. 1 boincer umatlas     36292 Nov 24 17:48 runpilot2-wrapper.sh
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas       100 Nov 25 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:56:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 16:00 run_atlas
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas       105 Nov 25 16:00 job.xml
[2025-11-26 20:56:55] -rw-r--r--. 2 boincer umatlas 411616377 Nov 25 16:00 EVNT.47483658._001437.pool.root.1
[2025-11-26 20:56:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 16:00 start_atlas.sh
[2025-11-26 20:56:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 16:00 shared
[2025-11-26 20:56:55] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 16:00 input.tar.gz
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas         0 Nov 25 16:00 boinc_lockfile
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 16:00 pandaJob.out
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas        57 Nov 25 16:00 setup.sh.local
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas    991893 Nov 25 16:01 agis_schedconf.cvmfs.json
[2025-11-26 20:56:55] drwx------. 5 boincer umatlas      4096 Nov 25 16:01 pilot3
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:21 boinc_task_state.xml
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas 934581909 Nov 26 20:53 HITS.47556149._004232.pool.root.1
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas      1060 Nov 26 20:55 memory_monitor_summary.json
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas   2595233 Nov 26 20:55 log.47556149._004232.job.log.tgz.1
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas        95 Nov 26 20:56 pilot_heartbeat.json
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas      8622 Nov 26 20:56 heartbeat.json
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas      6877 Nov 26 20:56 init_data.xml
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas       823 Nov 26 20:56 pilotlog.txt
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:56 boinc_mmap_file
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:56 wrapper_checkpoint.txt
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas  12099307 Nov 26 20:56 log.47556149._004232.job.log.1
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas       353 Nov 26 20:56 output.list
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:56 runtime_log
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas  14714880 Nov 26 20:56 result.tar.gz
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas      9349 Nov 26 20:56 runtime_log.err
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas       664 Nov 26 20:56 g3BODmqXuh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9xLKDmpYTtum.diag
[2025-11-26 20:56:55] -rw-r--r--. 1 boincer umatlas     21904 Nov 26 20:56 stderr.txt
[2025-11-26 20:56:55] HITS file was successfully produced:
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas 934581909 Nov 26 20:53 shared/HITS.pool.root.1
[2025-11-26 20:56:55]  *** Contents of shared directory: ***
[2025-11-26 20:56:55] total 1329628
[2025-11-26 20:56:55] -rw-r--r--. 2 boincer umatlas 411616377 Nov 25 16:00 ATLAS.root_0
[2025-11-26 20:56:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 16:00 start_atlas.sh
[2025-11-26 20:56:55] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 16:00 input.tar.gz
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas 934581909 Nov 26 20:53 HITS.pool.root.1
[2025-11-26 20:56:55] -rw-------. 1 boincer umatlas  14714880 Nov 26 20:56 result.tar.gz
20:56:57 (1548649): run_atlas exited; CPU time 274720.253737
20:56:57 (1548649): called boinc_finish(0)

</stderr_txt>
]]>

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