Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:24:26 (10421): wrapper (7.7.26015): starting
00:24:26 (10421): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:24:26] Arguments: --nthreads 8
[2025-11-26 00:24:26] Threads: 8
[2025-11-26 00:24:26] Checking for CVMFS
[2025-11-26 00:24:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:24:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:24:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:24:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:24:26] 2.11.0.0 4268 64711 96108 153302 1 89 2047323 4096000 815 130560 1 12253790 99.695 6774711 688 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-26 00:24:26] CVMFS is ok
[2025-11-26 00:24:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:24:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:24:26] Further information can be found at the LHC@home message board.
[2025-11-26 00:24:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:24:26] Checking for apptainer binary...
[2025-11-26 00:24:26] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-26 00:24:26] apptainer is not installed, using version from CVMFS
[2025-11-26 00:24:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:24:27] WARNING: Environment variable TMPDIR already has value [/tmp/job_10924839/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node267
[2025-11-26 00:24:27] apptainer works
[2025-11-26 00:24:27] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:24:27] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:24:27] Starting ATLAS job with PandaID=6895374417
[2025-11-26 00:24:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10924839/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:47:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:47:03] 2025-11-26 03:46:14,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,107 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 04:47:03] 2025-11-26 03:46:15,112 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2899.2995156250004
[2025-11-26 04:47:03] 2025-11-26 03:46:15,117 | INFO     | using path: /tmp/job_10924839/atlas/pilot/slots/0/PanDA_Pilot-6895374417/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,117 | INFO     | extracted standard info from prmon json
[2025-11-26 04:47:03] 2025-11-26 03:46:15,117 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:47:03] 2025-11-26 03:46:15,117 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:47:03] 2025-11-26 03:46:15,120 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:47:03] 2025-11-26 03:46:15,120 | INFO     | sum of square deviations: 5263458688.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,121 | INFO     | sum of deviations: 108126458107.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,121 | INFO     | mean x: 1764120899.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,121 | INFO     | mean y: 2907450.143968872
[2025-11-26 04:47:03] 2025-11-26 03:46:15,121 | INFO     | intersect: -36237168854.86962
[2025-11-26 04:47:03] 2025-11-26 03:46:15,121 | INFO     | chi2: 3.1128222154765464
[2025-11-26 04:47:03] 2025-11-26 03:46:15,122 | INFO     | sum of square deviations: 4962187923.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,122 | INFO     | sum of deviations: 160791239621.00003
[2025-11-26 04:47:03] 2025-11-26 03:46:15,122 | INFO     | mean x: 1764120746.5
[2025-11-26 04:47:03] 2025-11-26 03:46:15,123 | INFO     | mean y: 2933941.4285714286
[2025-11-26 04:47:03] 2025-11-26 03:46:15,123 | INFO     | intersect: -57160391203.131645
[2025-11-26 04:47:03] 2025-11-26 03:46:15,123 | INFO     | chi2: 1.4630332542273954
[2025-11-26 04:47:03] 2025-11-26 03:46:15,123 | INFO     | current chi2=1.4630332542273954 (change=52.99978113258814 %)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,123 | INFO     | sum of square deviations: 4672638308.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | sum of deviations: 155110019322.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | mean x: 1764120594.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | mean y: 2930948.825910931
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | intersect: -58557728230.206375
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | chi2: 1.4604890043132013
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | current chi2=1.4604890043132013 (change=0.17390239810630181 %)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | right removable region: 246
[2025-11-26 04:47:03] 2025-11-26 03:46:15,124 | INFO     | sum of square deviations: 4962187923.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,125 | INFO     | sum of deviations: 59127377866.5
[2025-11-26 04:47:03] 2025-11-26 03:46:15,125 | INFO     | mean x: 1764121051.5
[2025-11-26 04:47:03] 2025-11-26 03:46:15,125 | INFO     | mean y: 2932063.6865079366
[2025-11-26 04:47:03] 2025-11-26 03:46:15,125 | INFO     | intersect: -21017604367.595238
[2025-11-26 04:47:03] 2025-11-26 03:46:15,126 | INFO     | chi2: 1.7198495304389425
[2025-11-26 04:47:03] 2025-11-26 03:46:15,126 | INFO     | current chi2=1.7198495304389425 (change=44.749509885656984 %)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,126 | INFO     | sum of square deviations: 4672638308.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | sum of deviations: 47620325330.99997
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | mean x: 1764121204.0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | mean y: 2938119.2510121455
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | intersect: -17975775429.787365
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | chi2: 1.699760644865912
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | current chi2=1.699760644865912 (change=1.1680606481837659 %)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | left removable region: 20
[2025-11-26 04:47:03] 2025-11-26 03:46:15,127 | INFO     | sum of square deviations: 3579276412.5
[2025-11-26 04:47:03] 2025-11-26 03:46:15,128 | INFO     | sum of deviations: 76164241167.5
[2025-11-26 04:47:03] 2025-11-26 03:46:15,128 | INFO     | mean x: 1764121173.5
[2025-11-26 04:47:03] 2025-11-26 03:46:15,128 | INFO     | mean y: 2974517.3761061947
[2025-11-26 04:47:03] 2025-11-26 03:46:15,128 | INFO     | intersect: -37536163292.1286
[2025-11-26 04:47:03] 2025-11-26 03:46:15,128 | INFO     | chi2: 0.021188470860516208
[2025-11-26 04:47:03] 2025-11-26 03:46:15,128 | INFO     | current memory leak: 21.28 B/s (using 226 data points, chi2=0.02)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | could have reported an average CPU frequency of 2851 MHz (12 samples)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | ..............................
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . Timing measurements:
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . get job = 0 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . initial setup = 1 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . payload setup = 2 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . stage-in = 0 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . payload execution = 15675 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . stage-out = 1 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | . log creation = 0 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,129 | INFO     | ..............................
[2025-11-26 04:47:03] 2025-11-26 03:46:15,178 | INFO     | 
[2025-11-26 04:47:03] 2025-11-26 03:46:15,178 | INFO     | job summary report
[2025-11-26 04:47:03] 2025-11-26 03:46:15,178 | INFO     | --------------------------------------------------
[2025-11-26 04:47:03] 2025-11-26 03:46:15,178 | INFO     | PanDA job id: 6895374417
[2025-11-26 04:47:03] 2025-11-26 03:46:15,178 | INFO     | task id: 47556137
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | errors: (none)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | pilot state: finished 
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | transexitcode: 0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | exeerrorcode: 0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | exeerrordiag: 
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | exitcode: 0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | exitmsg: OK
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | cpuconsumptiontime: 119767 s
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | nevents: 1000
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | neventsw: 0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | pid: 5957
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | pgrp: 5957
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | corecount: 8
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | event service: False
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | sizes: {0: 2283486, 1: 2284468, 3: 2284730, 11: 2284758, 15682: 2316978, 15684: 2326002, 15687: 2326186, 15691: 2326432}
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | --------------------------------------------------
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | 
[2025-11-26 04:47:03] 2025-11-26 03:46:15,179 | INFO     | executing command: ls -lF /tmp/job_10924839/atlas/pilot/slots/0
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | job 6895374417 has completed (purged errors)
[2025-11-26 04:47:03] 2025-11-26 03:46:15,190 | INFO     | overall cleanup function is called
[2025-11-26 04:47:03] 2025-11-26 03:46:16,197 | INFO     | --- collectZombieJob: --- 10, [5957]
[2025-11-26 04:47:03] 2025-11-26 03:46:16,197 | INFO     | zombie collector waiting for pid 5957
[2025-11-26 04:47:03] 2025-11-26 03:46:16,197 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:47:03] 2025-11-26 03:46:16,197 | INFO     | collected zombie processes
[2025-11-26 04:47:03] 2025-11-26 03:46:16,197 | INFO     | will attempt to kill all subprocesses of pid=5957
[2025-11-26 04:47:03] 2025-11-26 03:46:16,311 | INFO     | process IDs to be killed: [5957] (in reverse order)
[2025-11-26 04:47:03] 2025-11-26 03:46:16,356 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:47:03] 2025-11-26 03:46:16,356 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:47:03] 2025-11-26 03:46:16,362 | INFO     | did not find any defunct processes belonging to 5957
[2025-11-26 04:47:03] 2025-11-26 03:46:16,365 | INFO     | did not find any defunct processes belonging to 5957
[2025-11-26 04:47:03] 2025-11-26 03:46:16,366 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:47:03] 2025-11-26 03:46:16,366 | INFO     | ready for new job
[2025-11-26 04:47:03] 2025-11-26 03:46:16,366 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:47:03] 2025-11-26 03:46:16,367 | INFO     | ***************************************
[2025-11-26 04:47:03] 2025-11-26 03:46:16,367 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:47:03] 2025-11-26 03:46:16,367 | INFO     | ***************************************
[2025-11-26 04:47:03] 2025-11-26 03:46:16,367 | INFO     | 
[2025-11-26 04:47:03] 2025-11-26 03:46:16,380 | INFO     | architecture information:
[2025-11-26 04:47:03] 2025-11-26 03:46:16,381 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:47:03] 2025-11-26 03:46:16,387 | INFO     | cat /etc/os-release:
[2025-11-26 04:47:03] NAME="CentOS Linux"
[2025-11-26 04:47:03] VERSION="7 (Core)"
[2025-11-26 04:47:03] ID="centos"
[2025-11-26 04:47:03] ID_LIKE="rhel fedora"
[2025-11-26 04:47:03] VERSION_ID="7"
[2025-11-26 04:47:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:47:03] ANSI_COLOR="0;31"
[2025-11-26 04:47:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:47:03] HOME_URL="https://www.centos.org/"
[2025-11-26 04:47:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:47:03] 
[2025-11-26 04:47:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:47:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:47:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:47:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:47:03] 
[2025-11-26 04:47:03] 2025-11-26 03:46:16,387 | INFO     | ***************************************
[2025-11-26 04:47:03] 2025-11-26 03:46:16,890 | INFO     | executing command: df -mP /tmp/job_10924839/atlas/pilot/slots/0
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | INFO     | sufficient remaining disk space (219203764224 B)
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | INFO     | update_server=False
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:47:03] 2025-11-26 03:46:16,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:47:03] 2025-11-26 03:46:16,920 | INFO     | all payload control threads have been joined
[2025-11-26 04:47:03] 2025-11-26 03:46:17,275 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 04:47:03] 2025-11-26 03:46:17,275 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 04:47:03] 2025-11-26 03:46:17,275 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:47:03] 2025-11-26 03:46:17,275 | INFO     | will abort loop
[2025-11-26 04:47:03] 2025-11-26 03:46:17,304 | INFO     | all job control threads have been joined
[2025-11-26 04:47:03] 2025-11-26 03:46:17,911 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:17,912 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:17,925 | INFO     | [payload] control thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:17,940 | INFO     | all data control threads have been joined
[2025-11-26 04:47:03] 2025-11-26 03:46:17,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:47:03] 2025-11-26 03:46:18,280 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,310 | INFO     | [job] control thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,455 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,633 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,679 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,754 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,912 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,945 | INFO     | [data] control thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:18,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:19,206 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:19,389 | INFO     | [job] validate thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:19,425 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:21,951 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:47:03] 2025-11-26 03:46:46,811 | INFO     | PID=17472 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 04:47:03] 2025-11-26 03:46:46,811 | INFO     | .. there are 6 such processes running
[2025-11-26 04:47:03] 2025-11-26 03:46:46,811 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:47:03] 2025-11-26 03:46:46,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:47:03] 2025-11-26 03:46:46,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:47:03] 2025-11-26 03:46:57,809 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:47:03] 2025-11-26 03:46:58,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2025-11-26 04:47:03] 2025-11-26 03:46:58,871 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:47:03] 2025-11-26 03:46:58,871 | INFO     | [monitor] control thread has ended
[2025-11-26 04:47:03] 2025-11-26 03:47:03,312 | INFO     | all workflow threads have been joined
[2025-11-26 04:47:03] 2025-11-26 03:47:03,312 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:47:03] 2025-11-26 03:47:03,312 | INFO     | traces error code: 0
[2025-11-26 04:47:03] 2025-11-26 03:47:03,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:47:03] 2025-11-26 03:47:03,371 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:47:03] 2025-11-26 03:47:03,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:47:03] 2025-11-26 03:47:03,373 [wrapper] pilotpid: 17472
[2025-11-26 04:47:03] 2025-11-26 03:47:03,374 [wrapper] Pilot exit status: 0
[2025-11-26 04:47:03] 2025-11-26 03:47:03,379 [wrapper] pandaids: 6895374417
[2025-11-26 04:47:03] 2025-11-26 03:47:03,405 [wrapper] cleanup supervisor_pilot 12771 17473
[2025-11-26 04:47:03] 2025-11-26 03:47:03,407 [wrapper] Test setup, not cleaning
[2025-11-26 04:47:03] 2025-11-26 03:47:03,408 [wrapper] apfmon messages muted
[2025-11-26 04:47:03] 2025-11-26 03:47:03,409 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:47:03] 2025-11-26 03:47:03,410 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:47:03]  *** Error codes and diagnostics ***
[2025-11-26 04:47:03]     "exeErrorCode": 0,
[2025-11-26 04:47:03]     "exeErrorDiag": "",
[2025-11-26 04:47:03]     "pilotErrorCode": 0,
[2025-11-26 04:47:03]     "pilotErrorDiag": "",
[2025-11-26 04:47:03]  *** Listing of results directory ***
[2025-11-26 04:47:03] total 1301036
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user    576529 Nov 24 00:11 pilot3.tar.gz
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      5112 Nov 24 00:19 queuedata.json
[2025-11-26 04:47:03] -rwx------ 1 mf493845 unix-user     36292 Nov 24 00:20 runpilot2-wrapper.sh
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user       100 Nov 25 22:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:47:03] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 25 22:40 run_atlas
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user       105 Nov 25 22:40 job.xml
[2025-11-26 04:47:03] -rw-r--r-- 2 mf493845 unix-user 410025122 Nov 26 00:24 EVNT.47483658._000942.pool.root.1
[2025-11-26 04:47:03] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 26 00:24 start_atlas.sh
[2025-11-26 04:47:03] drwxrwx--x 2 mf493845 unix-user       100 Nov 26 00:24 shared
[2025-11-26 04:47:03] -rw-r--r-- 2 mf493845 unix-user    590103 Nov 26 00:24 input.tar.gz
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      6391 Nov 26 00:24 init_data.xml
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user         0 Nov 26 00:24 boinc_setup_complete
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      8192 Nov 26 00:24 boinc_mmap_file
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user         0 Nov 26 00:24 boinc_lockfile
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      2785 Nov 26 00:24 pandaJob.out
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user    991877 Nov 26 00:24 agis_schedconf.cvmfs.json
[2025-11-26 04:47:03] drwx------ 5 mf493845 unix-user       440 Nov 26 00:24 pilot3
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user 910743701 Nov 26 04:45 HITS.47556137._009290.pool.root.1
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      1024 Nov 26 04:46 memory_monitor_summary.json
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user   1516240 Nov 26 04:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user   1554365 Nov 26 04:46 log.47556137._009290.job.log.tgz.1
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      8590 Nov 26 04:46 heartbeat.json
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user        95 Nov 26 04:46 pilot_heartbeat.json
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      5021 Nov 26 04:47 pilotlog.txt
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user   2248170 Nov 26 04:47 log.47556137._009290.job.log.1
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user       353 Nov 26 04:47 output.list
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user       620 Nov 26 04:47 runtime_log
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user   3819520 Nov 26 04:47 result.tar.gz
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user       650 Nov 26 04:47 wd4KDmeYYh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRpIKDmM3fHdm.diag
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user      9221 Nov 26 04:47 runtime_log.err
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user     21704 Nov 26 04:47 stderr.txt
[2025-11-26 04:47:03] HITS file was successfully produced:
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user 910743701 Nov 26 04:45 shared/HITS.pool.root.1
[2025-11-26 04:47:03]  *** Contents of shared directory: ***
[2025-11-26 04:47:03] total 1294144
[2025-11-26 04:47:03] -rw-r--r-- 2 mf493845 unix-user 410025122 Nov 26 00:24 ATLAS.root_0
[2025-11-26 04:47:03] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 26 00:24 start_atlas.sh
[2025-11-26 04:47:03] -rw-r--r-- 2 mf493845 unix-user    590103 Nov 26 00:24 input.tar.gz
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user 910743701 Nov 26 04:45 HITS.pool.root.1
[2025-11-26 04:47:03] -rw------- 1 mf493845 unix-user   3819520 Nov 26 04:47 result.tar.gz
04:47:04 (10421): run_atlas exited; CPU time 119945.705733
04:47:04 (10421): called boinc_finish(0)

</stderr_txt>
]]>

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