Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:01:53 (3504471): wrapper (7.7.26015): starting
18:01:53 (3504471): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:01:53] Arguments: --nthreads 8
[2025-11-25 18:01:53] Threads: 8
[2025-11-25 18:01:53] Checking for CVMFS
[2025-11-25 18:01:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:01:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:01:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:01:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:01:54] 2.13.3.0 13122 29245 370360 153300 2 550 22514958 32935936 42726 16776704 0 143856445 99.566 161512141 36199 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 18:01:54] CVMFS is ok
[2025-11-25 18:01:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:01:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:01:54] Further information can be found at the LHC@home message board.
[2025-11-25 18:01:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:01:54] Checking for apptainer binary...
[2025-11-25 18:01:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:01:54] Running /usr/bin/apptainer --version
[2025-11-25 18:01:54] apptainer version 1.4.4-1.el9
[2025-11-25 18:01:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:01:54] c6-8-25-2.aglt2.org
[2025-11-25 18:01:54] apptainer works
[2025-11-25 18:01:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:01:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:01:54] Starting ATLAS job with PandaID=6895559641
[2025-11-25 18:01:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:11:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:11:25] 2025-11-27 01:10:47,892 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:11:25] 2025-11-27 01:10:47,972 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2684.491697916666
[2025-11-26 20:11:25] 2025-11-27 01:10:48,300 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895559641/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:11:25] 2025-11-27 01:10:48,301 | INFO     | extracted standard info from prmon json
[2025-11-26 20:11:25] 2025-11-27 01:10:48,409 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:11:25] 2025-11-27 01:10:48,409 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:11:25] 2025-11-27 01:10:48,569 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:11:25] 2025-11-27 01:10:48,571 | INFO     | sum of square deviations: 1136936817210.638
[2025-11-26 20:11:25] 2025-11-27 01:10:48,667 | INFO     | sum of deviations: 4247323650927.703
[2025-11-26 20:11:25] 2025-11-27 01:10:48,667 | INFO     | mean x: 1764158778.9533074
[2025-11-26 20:11:25] 2025-11-27 01:10:48,667 | INFO     | mean y: 2918979.8430609596
[2025-11-26 20:11:25] 2025-11-27 01:10:48,667 | INFO     | intersect: -6587555699.500459
[2025-11-26 20:11:25] 2025-11-27 01:10:48,669 | INFO     | chi2: 10.444357449740847
[2025-11-26 20:11:25] 2025-11-27 01:10:48,671 | INFO     | sum of square deviations: 1125913749827.5435
[2025-11-26 20:11:25] 2025-11-27 01:10:48,747 | INFO     | sum of deviations: 4782222723261.802
[2025-11-26 20:11:25] 2025-11-27 01:10:48,747 | INFO     | mean x: 1764158626.4580352
[2025-11-26 20:11:25] 2025-11-27 01:10:48,747 | INFO     | mean y: 2926379.2062459337
[2025-11-26 20:11:25] 2025-11-27 01:10:48,747 | INFO     | intersect: -7490187078.354939
[2025-11-26 20:11:25] 2025-11-27 01:10:48,749 | INFO     | chi2: 7.157997966450587
[2025-11-26 20:11:25] 2025-11-27 01:10:48,749 | INFO     | current chi2=7.157997966450587 (change=31.465406073130943 %)
[2025-11-26 20:11:25] 2025-11-27 01:10:48,751 | INFO     | sum of square deviations: 1114962172156.88
[2025-11-26 20:11:25] 2025-11-27 01:10:48,852 | INFO     | sum of deviations: 5374133043749.695
[2025-11-26 20:11:25] 2025-11-27 01:10:48,853 | INFO     | mean x: 1764158473.9627938
[2025-11-26 20:11:25] 2025-11-27 01:10:48,853 | INFO     | mean y: 2934621.3283289815
[2025-11-26 20:11:25] 2025-11-27 01:10:48,853 | INFO     | intersect: -8500333548.7423725
[2025-11-26 20:11:25] 2025-11-27 01:10:48,857 | INFO     | chi2: 3.2829372082968558
[2025-11-26 20:11:25] 2025-11-27 01:10:48,857 | INFO     | current chi2=3.2829372082968558 (change=54.136097499832694 %)
[2025-11-26 20:11:25] 2025-11-27 01:10:48,859 | INFO     | sum of square deviations: 1104081478683.8765
[2025-11-26 20:11:25] 2025-11-27 01:10:48,999 | INFO     | sum of deviations: 5584561593781.902
[2025-11-26 20:11:25] 2025-11-27 01:10:48,999 | INFO     | mean x: 1764158321.464964
[2025-11-26 20:11:25] 2025-11-27 01:10:48,999 | INFO     | mean y: 2937568.400130976
[2025-11-26 20:11:25] 2025-11-27 01:10:49,000 | INFO     | intersect: -8920362928.541588
[2025-11-26 20:11:25] 2025-11-27 01:10:49,001 | INFO     | chi2: 2.5792693100592112
[2025-11-26 20:11:25] 2025-11-27 01:10:49,002 | INFO     | current chi2=2.5792693100592112 (change=21.43409555501971 %)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,002 | INFO     | right removable region: 1526
[2025-11-26 20:11:25] 2025-11-27 01:10:49,008 | INFO     | sum of square deviations: 1125912476637.4568
[2025-11-26 20:11:25] 2025-11-27 01:10:49,201 | INFO     | sum of deviations: 3815945800695.339
[2025-11-26 20:11:25] 2025-11-27 01:10:49,201 | INFO     | mean x: 1764158931.4573846
[2025-11-26 20:11:25] 2025-11-27 01:10:49,201 | INFO     | mean y: 2924943.089134678
[2025-11-26 20:11:25] 2025-11-27 01:10:49,201 | INFO     | intersect: -5976167576.037166
[2025-11-26 20:11:25] 2025-11-27 01:10:49,203 | INFO     | chi2: 8.298356947081178
[2025-11-26 20:11:25] 2025-11-27 01:10:49,204 | INFO     | current chi2=8.298356947081178 (change=20.54698446492673 %)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,204 | INFO     | left removable region: 10
[2025-11-26 20:11:25] 2025-11-27 01:10:49,206 | INFO     | sum of square deviations: 1080392000144.7236
[2025-11-26 20:11:25] 2025-11-27 01:10:49,400 | INFO     | sum of deviations: 5014823183778.252
[2025-11-26 20:11:25] 2025-11-27 01:10:49,400 | INFO     | mean x: 1764158595.9709764
[2025-11-26 20:11:25] 2025-11-27 01:10:49,400 | INFO     | mean y: 2945300.0738786277
[2025-11-26 20:11:25] 2025-11-27 01:10:49,400 | INFO     | intersect: -8185696809.227053
[2025-11-26 20:11:25] 2025-11-27 01:10:49,402 | INFO     | chi2: 0.32318768592444175
[2025-11-26 20:11:25] 2025-11-27 01:10:49,402 | INFO     | current memory leak: 4.64 B/s (using 1516 data points, chi2=0.32)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,404 | INFO     | could have reported an average CPU frequency of 2692 MHz (55 samples)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,404 | INFO     | ..............................
[2025-11-26 20:11:25] 2025-11-27 01:10:49,404 | INFO     | . Timing measurements:
[2025-11-26 20:11:25] 2025-11-27 01:10:49,404 | INFO     | . get job = 0 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,404 | INFO     | . initial setup = 2 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,405 | INFO     | . payload setup = 11 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,405 | INFO     | . stage-in = 0 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,405 | INFO     | . payload execution = 94043 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,405 | INFO     | . stage-out = 7 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,405 | INFO     | . log creation = 2 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,405 | INFO     | ..............................
[2025-11-26 20:11:25] 2025-11-27 01:10:49,786 | INFO     | 
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | job summary report
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | --------------------------------------------------
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | PanDA job id: 6895559641
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | task id: 47556161
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | errors: (none)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | pilot state: finished 
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | transexitcode: 0
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | exeerrorcode: 0
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | exeerrordiag: 
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | exitcode: 0
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | exitmsg: OK
[2025-11-26 20:11:25] 2025-11-27 01:10:49,787 | INFO     | cpuconsumptiontime: 266743 s
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | nevents: 1000
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | neventsw: 0
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | pid: 3515857
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | pgrp: 3515857
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | corecount: 8
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | event service: False
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | sizes: {0: 2283484, 1: 2284340, 9: 2284602, 12: 2284630, 94058: 2353128, 94066: 2362306, 94093: 2362496}
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | --------------------------------------------------
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | 
[2025-11-26 20:11:25] 2025-11-27 01:10:49,788 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:11:25] 2025-11-27 01:10:49,923 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,924 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:11:25] 2025-11-27 01:10:49,925 | INFO     | job 6895559641 has completed (purged errors)
[2025-11-26 20:11:25] 2025-11-27 01:10:49,926 | INFO     | overall cleanup function is called
[2025-11-26 20:11:25] 2025-11-27 01:10:50,021 | INFO     | PID=3508426 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:11:25] 2025-11-27 01:10:50,021 | INFO     | .. there are 62 such processes running
[2025-11-26 20:11:25] 2025-11-27 01:10:50,955 | INFO     | --- collectZombieJob: --- 10, [3515857]
[2025-11-26 20:11:25] 2025-11-27 01:10:50,956 | INFO     | zombie collector waiting for pid 3515857
[2025-11-26 20:11:25] 2025-11-27 01:10:50,956 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:11:25] 2025-11-27 01:10:50,956 | INFO     | collected zombie processes
[2025-11-26 20:11:25] 2025-11-27 01:10:50,956 | INFO     | will attempt to kill all subprocesses of pid=3515857
[2025-11-26 20:11:25] 2025-11-27 01:10:52,712 | INFO     | process IDs to be killed: [3515857] (in reverse order)
[2025-11-26 20:11:25] 2025-11-27 01:10:52,940 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:11:25] 2025-11-27 01:10:52,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:11:25] 2025-11-27 01:10:52,964 | INFO     | did not find any defunct processes belonging to 3515857
[2025-11-26 20:11:25] 2025-11-27 01:10:52,988 | INFO     | did not find any defunct processes belonging to 3515857
[2025-11-26 20:11:25] 2025-11-27 01:10:52,991 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:11:25] 2025-11-27 01:10:52,992 | INFO     | ready for new job
[2025-11-26 20:11:25] 2025-11-27 01:10:52,992 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:11:25] 2025-11-27 01:10:53,004 | INFO     | ***************************************
[2025-11-26 20:11:25] 2025-11-27 01:10:53,005 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:11:25] 2025-11-27 01:10:53,005 | INFO     | ***************************************
[2025-11-26 20:11:25] 2025-11-27 01:10:53,005 | INFO     | 
[2025-11-26 20:11:25] 2025-11-27 01:10:53,036 | INFO     | architecture information:
[2025-11-26 20:11:25] 2025-11-27 01:10:53,038 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:11:25] 2025-11-27 01:10:53,095 | INFO     | cat /etc/os-release:
[2025-11-26 20:11:25] NAME="CentOS Linux"
[2025-11-26 20:11:25] VERSION="7 (Core)"
[2025-11-26 20:11:25] ID="centos"
[2025-11-26 20:11:25] ID_LIKE="rhel fedora"
[2025-11-26 20:11:25] VERSION_ID="7"
[2025-11-26 20:11:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:11:25] ANSI_COLOR="0;31"
[2025-11-26 20:11:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:11:25] HOME_URL="https://www.centos.org/"
[2025-11-26 20:11:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:11:25] 
[2025-11-26 20:11:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:11:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:11:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:11:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:11:25] 
[2025-11-26 20:11:25] 2025-11-27 01:10:53,096 | INFO     | ***************************************
[2025-11-26 20:11:25] 2025-11-27 01:10:53,602 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:11:25] 2025-11-27 01:10:53,640 | INFO     | sufficient remaining disk space (67127738368 B)
[2025-11-26 20:11:25] 2025-11-27 01:10:53,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:11:25] 2025-11-27 01:10:53,641 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:11:25] 2025-11-27 01:10:53,641 | INFO     | update_server=False
[2025-11-26 20:11:25] 2025-11-27 01:10:53,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:11:25] 2025-11-27 01:10:53,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:11:25] 2025-11-27 01:10:53,641 | INFO     | aborting loop
[2025-11-26 20:11:25] 2025-11-27 01:10:53,773 | INFO     | all job control threads have been joined
[2025-11-26 20:11:25] 2025-11-27 01:10:53,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:11:25] 2025-11-27 01:10:54,210 | INFO     | all data control threads have been joined
[2025-11-26 20:11:25] 2025-11-27 01:10:54,592 | INFO     | all payload control threads have been joined
[2025-11-26 20:11:25] 2025-11-27 01:10:54,649 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:54,649 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:54,688 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:54,780 | INFO     | [job] control thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:54,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:11:25] 2025-11-27 01:10:54,881 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:54,950 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,014 | INFO     | [job] validate thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,217 | INFO     | [data] control thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,386 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,450 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,598 | INFO     | [payload] control thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,618 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,806 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:55,886 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:10:56,518 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:11:25] 2025-11-27 01:11:00,539 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:11:25] 2025-11-27 01:11:02,120 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:11:25] 2025-11-27 01:11:03,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911878149952)>', '<ExcThread(monitor, started 139911604705024)>']
[2025-11-26 20:11:25] 2025-11-27 01:11:08,893 | INFO     | all workflow threads have been joined
[2025-11-26 20:11:25] 2025-11-27 01:11:08,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:11:25] 2025-11-27 01:11:08,894 | INFO     | traces error code: 0
[2025-11-26 20:11:25] 2025-11-27 01:11:08,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:11:25] 2025-11-27 01:11:21,043 | INFO     | 94118s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 20:11:25] 2025-11-27 01:11:23,107 | INFO     | PID=3508426 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:11:25] 2025-11-27 01:11:23,107 | INFO     | .. there are 61 such processes running
[2025-11-26 20:11:25] 2025-11-27 01:11:23,107 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:11:25] 2025-11-27 01:11:23,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:11:25] 2025-11-27 01:11:23,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:11:25] 2025-11-27 01:11:23,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:11:25] 2025-11-27 01:11:23,108 | INFO     | [monitor] control thread has ended
[2025-11-26 20:11:25] 2025-11-27 01:11:23,737 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:11:25] 2025-11-27 01:11:23,754 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:11:25] 2025-11-27 01:11:23,772 [wrapper] pilotpid: 3508426
[2025-11-26 20:11:25] 2025-11-27 01:11:23,786 [wrapper] Pilot exit status: 0
[2025-11-26 20:11:25] 2025-11-27 01:11:23,873 [wrapper] pandaids: 6895559641
[2025-11-26 20:11:25] 2025-11-27 01:11:24,122 [wrapper] cleanup supervisor_pilot 4067515 3508427
[2025-11-26 20:11:25] 2025-11-27 01:11:24,139 [wrapper] Test setup, not cleaning
[2025-11-26 20:11:25] 2025-11-27 01:11:24,163 [wrapper] apfmon messages muted
[2025-11-26 20:11:25] 2025-11-27 01:11:24,179 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:11:25] 2025-11-27 01:11:24,204 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:11:25]  *** Error codes and diagnostics ***
[2025-11-26 20:11:25]     "exeErrorCode": 0,
[2025-11-26 20:11:25]     "exeErrorDiag": "",
[2025-11-26 20:11:25]     "pilotErrorCode": 0,
[2025-11-26 20:11:25]     "pilotErrorDiag": "",
[2025-11-26 20:11:25]  *** Listing of results directory ***
[2025-11-26 20:11:25] total 1322700
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 05:13 pilot3.tar.gz
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 05:42 queuedata.json
[2025-11-26 20:11:25] -rwx------. 1 boincer umatlas     36292 Nov 24 05:44 runpilot2-wrapper.sh
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:11:25] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:01 run_atlas
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:01 job.xml
[2025-11-26 20:11:25] -rw-r--r--. 2 boincer umatlas 408819109 Nov 25 18:01 EVNT.47483658._002035.pool.root.1
[2025-11-26 20:11:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:01 start_atlas.sh
[2025-11-26 20:11:25] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:01 shared
[2025-11-26 20:11:25] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 18:01 input.tar.gz
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:01 boinc_lockfile
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 18:01 pandaJob.out
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas        57 Nov 25 18:01 setup.sh.local
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas    991877 Nov 25 18:02 agis_schedconf.cvmfs.json
[2025-11-26 20:11:25] drwx------. 5 boincer umatlas      4096 Nov 25 18:02 pilot3
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:54 boinc_task_state.xml
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas 913423853 Nov 26 20:09 HITS.47556161._000189.pool.root.1
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas      1059 Nov 26 20:10 memory_monitor_summary.json
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:10 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas   2510349 Nov 26 20:10 log.47556161._000189.job.log.tgz.1
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas        95 Nov 26 20:10 pilot_heartbeat.json
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas      8632 Nov 26 20:10 heartbeat.json
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas      6878 Nov 26 20:11 init_data.xml
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:11 wrapper_checkpoint.txt
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas       939 Nov 26 20:11 pilotlog.txt
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas  11631131 Nov 26 20:11 log.47556161._000189.job.log.1
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas       353 Nov 26 20:11 output.list
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:11 runtime_log
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas  14161920 Nov 26 20:11 result.tar.gz
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas       661 Nov 26 20:11 T9TLDm6Ejh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQ1IKDmnp1eEn.diag
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 20:11 runtime_log.err
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas     21410 Nov 26 20:11 stderr.txt
[2025-11-26 20:11:25] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:11 boinc_mmap_file
[2025-11-26 20:11:25] HITS file was successfully produced:
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas 913423853 Nov 26 20:09 shared/HITS.pool.root.1
[2025-11-26 20:11:25]  *** Contents of shared directory: ***
[2025-11-26 20:11:25] total 1305692
[2025-11-26 20:11:25] -rw-r--r--. 2 boincer umatlas 408819109 Nov 25 18:01 ATLAS.root_0
[2025-11-26 20:11:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:01 start_atlas.sh
[2025-11-26 20:11:25] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 18:01 input.tar.gz
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas 913423853 Nov 26 20:09 HITS.pool.root.1
[2025-11-26 20:11:25] -rw-------. 1 boincer umatlas  14161920 Nov 26 20:11 result.tar.gz
20:11:46 (3504471): run_atlas exited; CPU time 270909.853374
20:11:46 (3504471): called boinc_finish(0)

</stderr_txt>
]]>

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