Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:57:13 (101764): wrapper (7.7.26015): starting
15:57:13 (101764): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 15:57:13] Arguments: --nthreads 12
[2025-11-25 15:57:13] Threads: 12
[2025-11-25 15:57:13] Checking for CVMFS
[2025-11-25 15:57:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:57:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:57:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:57:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:57:13] 2.13.3.0 3341 242 44936 153297 2 90 3122644 4096001 2304 130560 0 343716 99.980 16198 1469 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 15:57:13] CVMFS is ok
[2025-11-25 15:57:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:57:13] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 15:57:13] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 15:57:13] Further information can be found at the LHC@home message board.
[2025-11-25 15:57:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:57:13] Checking for apptainer binary...
[2025-11-25 15:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:57:13] Running /usr/bin/apptainer --version
[2025-11-25 15:57:13] apptainer version 1.4.4
[2025-11-25 15:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:57:13] zhiwei-Z790-Riptide-WiFi
[2025-11-25 15:57:13] apptainer works
[2025-11-25 15:57:13] Set ATHENA_PROC_NUMBER=12
[2025-11-25 15:57:13] Set ATHENA_CORE_NUMBER=12
[2025-11-25 15:57:13] Starting ATLAS job with PandaID=6895559890
[2025-11-25 15:57:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:50:46 (140022): wrapper (7.7.26015): starting
17:50:46 (140022): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 17:50:46] Arguments: --nthreads 12
[2025-11-25 17:50:46] Threads: 12
[2025-11-25 17:50:46] This job has been restarted, cleaning up previous attempt
[2025-11-25 17:50:46] Checking for CVMFS
[2025-11-25 17:50:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:50:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:50:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:50:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:50:48] 2.13.3.0 3341 355 46140 153300 0 56 3133738 4096000 0 130560 0 468207 99.981 20252 1415 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 17:50:48] CVMFS is ok
[2025-11-25 17:50:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:50:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 17:50:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 17:50:48] Further information can be found at the LHC@home message board.
[2025-11-25 17:50:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:50:48] Checking for apptainer binary...
[2025-11-25 17:50:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:50:48] Running /usr/bin/apptainer --version
[2025-11-25 17:50:48] apptainer version 1.4.4
[2025-11-25 17:50:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:50:48] zhiwei-Z790-Riptide-WiFi
[2025-11-25 17:50:48] apptainer works
[2025-11-25 17:50:48] Set ATHENA_PROC_NUMBER=12
[2025-11-25 17:50:48] Set ATHENA_CORE_NUMBER=12
[2025-11-25 17:50:48] Starting ATLAS job with PandaID=6895559890
[2025-11-25 17:50:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:04:51 (2921): wrapper (7.7.26015): starting
18:04:51 (2921): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 18:04:51] Arguments: --nthreads 12
[2025-11-25 18:04:51] Threads: 12
[2025-11-25 18:04:51] This job has been restarted, cleaning up previous attempt
[2025-11-25 18:04:51] Checking for CVMFS
[2025-11-25 18:04:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:04:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:04:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:04:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:04:56] 2.13.3.0 3257 0 25728 153300 3 1 3134949 4096001 0 130560 0 0 100.000 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-25 18:04:56] CVMFS is ok
[2025-11-25 18:04:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:04:56] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-25 18:04:56] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-25 18:04:56] Further information can be found at the LHC@home message board.
[2025-11-25 18:04:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:04:56] Checking for apptainer binary...
[2025-11-25 18:04:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:04:56] Running /usr/bin/apptainer --version
[2025-11-25 18:04:56] apptainer version 1.4.4
[2025-11-25 18:04:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:04:56] zhiwei-Z790-Riptide-WiFi
[2025-11-25 18:04:56] apptainer works
[2025-11-25 18:04:56] Set ATHENA_PROC_NUMBER=12
[2025-11-25 18:04:56] Set ATHENA_CORE_NUMBER=12
[2025-11-25 18:04:56] Starting ATLAS job with PandaID=6895559890
[2025-11-25 18:04:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:53:26]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:53:26] 2025-11-26 01:52:31,383 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 20:53:26] 2025-11-26 01:52:31,384 | INFO     | executing command: lscpu
[2025-11-25 20:53:26] 2025-11-26 01:52:31,395 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 20:53:26] 2025-11-26 01:52:32,604 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 20:53:26] 2025-11-26 01:52:32,606 | INFO     | found 24 cores (24 cores per socket, 1 socket) , CPU MHz: 3636.8949062500005
[2025-11-25 20:53:26] 2025-11-26 01:52:32,608 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6895559890/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,608 | INFO     | extracted standard info from prmon json
[2025-11-25 20:53:26] 2025-11-26 01:52:32,608 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:53:26] 2025-11-26 01:52:32,608 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:53:26] 2025-11-26 01:52:32,609 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | sum of square deviations: 1392881930.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | sum of deviations: 72977137110.00002
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | mean x: 1764116921.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | mean y: 3429144.7818181817
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | intersect: -92423789307.1713
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | chi2: 3.075462322931404
[2025-11-25 20:53:26] 2025-11-26 01:52:32,610 | INFO     | sum of square deviations: 1270051720.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | sum of deviations: 101982205565.5
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | mean x: 1764116768.5
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | mean y: 3464489.43125
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | intersect: -141651017838.82587
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | chi2: 1.5842641218727418
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | current chi2=1.5842641218727418 (change=48.48696047875214 %)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | sum of square deviations: 1154663510.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | sum of deviations: 96087803595.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | mean x: 1764116616.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | mean y: 3456698.7548387097
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | intersect: -146801295896.98972
[2025-11-25 20:53:26] 2025-11-26 01:52:32,611 | INFO     | chi2: 1.5824999452129944
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | current chi2=1.5824999452129944 (change=0.1113562211875353 %)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | right removable region: 154
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | sum of square deviations: 1270051720.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | sum of deviations: 34329082758.5
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | mean x: 1764117073.5
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | mean y: 3476544.96875
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | intersect: -47680031187.97958
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | chi2: 1.5508905864825195
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | current chi2=1.5508905864825195 (change=49.57211555093043 %)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,612 | INFO     | sum of square deviations: 1154663510.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | sum of deviations: 26741393256.000004
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | mean x: 1764117226.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | mean y: 3486551.1806451613
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | intersect: -40852530878.650345
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | chi2: 1.5438906497674851
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | current chi2=1.5438906497674851 (change=0.45134948758123133 %)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | left removable region: 20
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | sum of square deviations: 746051197.5
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | sum of deviations: 37446515422.0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | mean x: 1764117195.5
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | mean y: 3540706.76119403
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | intersect: -88542717229.51956
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | chi2: 0.007430997277085115
[2025-11-25 20:53:26] 2025-11-26 01:52:32,613 | INFO     | current memory leak: 50.19 B/s (using 134 data points, chi2=0.01)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | could have reported an average CPU frequency of 4540 MHz (9 samples)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | ..............................
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . Timing measurements:
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . get job = 0 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . initial setup = 0 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . payload setup = 1 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . stage-in = 0 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . payload execution = 10027 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . stage-out = 1 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | . log creation = 0 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,614 | INFO     | ..............................
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | 
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | job summary report
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | --------------------------------------------------
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | PanDA job id: 6895559890
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | task id: 47556161
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | errors: (none)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | pilot state: finished 
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | transexitcode: 0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | exeerrorcode: 0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | exeerrordiag: 
[2025-11-25 20:53:26] 2025-11-26 01:52:32,633 | INFO     | exitcode: 0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | exitmsg: OK
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | cpuconsumptiontime: 117135 s
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | nevents: 1000
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | neventsw: 0
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | pid: 24616
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | pgrp: 24616
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | corecount: 12
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | event service: False
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | sizes: {0: 2284263, 1: 2284525, 11: 2284553, 10033: 2314218, 10035: 2323214, 10036: 2323270, 10037: 2323708}
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | --------------------------------------------------
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | 
[2025-11-25 20:53:26] 2025-11-26 01:52:32,634 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-25 20:53:26] 2025-11-26 01:52:32,642 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | job 6895559890 has completed (purged errors)
[2025-11-25 20:53:26] 2025-11-26 01:52:32,643 | INFO     | overall cleanup function is called
[2025-11-25 20:53:26] 2025-11-26 01:52:33,653 | INFO     | --- collectZombieJob: --- 10, [24616]
[2025-11-25 20:53:26] 2025-11-26 01:52:33,653 | INFO     | zombie collector waiting for pid 24616
[2025-11-25 20:53:26] 2025-11-26 01:52:33,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:53:26] 2025-11-26 01:52:33,653 | INFO     | collected zombie processes
[2025-11-25 20:53:26] 2025-11-26 01:52:33,653 | INFO     | will attempt to kill all subprocesses of pid=24616
[2025-11-25 20:53:26] 2025-11-26 01:52:33,677 | INFO     | process IDs to be killed: [24616] (in reverse order)
[2025-11-25 20:53:26] 2025-11-26 01:52:33,700 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:53:26] 2025-11-26 01:52:33,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:53:26] 2025-11-26 01:52:33,702 | INFO     | did not find any defunct processes belonging to 24616
[2025-11-25 20:53:26] 2025-11-26 01:52:33,704 | INFO     | did not find any defunct processes belonging to 24616
[2025-11-25 20:53:26] 2025-11-26 01:52:33,705 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:53:26] 2025-11-26 01:52:33,705 | INFO     | ready for new job
[2025-11-25 20:53:26] 2025-11-26 01:52:33,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:53:26] 2025-11-26 01:52:33,706 | INFO     | ***************************************
[2025-11-25 20:53:26] 2025-11-26 01:52:33,706 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:53:26] 2025-11-26 01:52:33,706 | INFO     | ***************************************
[2025-11-25 20:53:26] 2025-11-26 01:52:33,706 | INFO     | 
[2025-11-25 20:53:26] 2025-11-26 01:52:33,707 | INFO     | architecture information:
[2025-11-25 20:53:26] 2025-11-26 01:52:33,707 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:53:26] 2025-11-26 01:52:33,713 | INFO     | cat /etc/os-release:
[2025-11-25 20:53:26] NAME="CentOS Linux"
[2025-11-25 20:53:26] VERSION="7 (Core)"
[2025-11-25 20:53:26] ID="centos"
[2025-11-25 20:53:26] ID_LIKE="rhel fedora"
[2025-11-25 20:53:26] VERSION_ID="7"
[2025-11-25 20:53:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:53:26] ANSI_COLOR="0;31"
[2025-11-25 20:53:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:53:26] HOME_URL="https://www.centos.org/"
[2025-11-25 20:53:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:53:26] 
[2025-11-25 20:53:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:53:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:53:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:53:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:53:26] 
[2025-11-25 20:53:26] 2025-11-26 01:52:33,713 | INFO     | ***************************************
[2025-11-25 20:53:26] 2025-11-26 01:52:34,215 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-25 20:53:26] 2025-11-26 01:52:34,223 | INFO     | sufficient remaining disk space (1815729930240 B)
[2025-11-25 20:53:26] 2025-11-26 01:52:34,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:53:26] 2025-11-26 01:52:34,223 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:53:26] 2025-11-26 01:52:34,224 | INFO     | update_server=False
[2025-11-25 20:53:26] 2025-11-26 01:52:34,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:53:26] 2025-11-26 01:52:34,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:53:26] 2025-11-26 01:52:34,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:53:26] 2025-11-26 01:52:34,754 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:53:26] 2025-11-26 01:52:34,754 | INFO     | aborting loop
[2025-11-25 20:53:26] 2025-11-26 01:52:34,811 | INFO     | all job control threads have been joined
[2025-11-25 20:53:26] 2025-11-26 01:52:35,228 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,229 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,249 | INFO     | all data control threads have been joined
[2025-11-25 20:53:26] 2025-11-26 01:52:35,395 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,516 | INFO     | all payload control threads have been joined
[2025-11-25 20:53:26] 2025-11-26 01:52:35,618 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,739 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,759 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,816 | INFO     | [job] control thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:35,995 | INFO     | [job] validate thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:36,028 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:36,124 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:36,203 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:36,229 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:36,254 | INFO     | [data] control thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:36,521 | INFO     | [payload] control thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:52:37,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:53:26] 2025-11-26 01:52:41,391 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:53:26] 2025-11-26 01:53:04,154 | INFO     | PID=11296 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 20:53:26] 2025-11-26 01:53:04,154 | INFO     | .. there are 2 such processes running
[2025-11-25 20:53:26] 2025-11-26 01:53:04,155 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:53:26] 2025-11-26 01:53:04,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:53:26] 2025-11-26 01:53:04,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:53:26] 2025-11-26 01:53:20,100 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:53:26] 2025-11-26 01:53:21,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130030167017280)>', '<ExcThread(monitor, started 130029816092416)>']
[2025-11-25 20:53:26] 2025-11-26 01:53:21,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:53:26] 2025-11-26 01:53:21,240 | INFO     | [monitor] control thread has ended
[2025-11-25 20:53:26] 2025-11-26 01:53:26,138 | INFO     | all workflow threads have been joined
[2025-11-25 20:53:26] 2025-11-26 01:53:26,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:53:26] 2025-11-26 01:53:26,138 | INFO     | traces error code: 0
[2025-11-25 20:53:26] 2025-11-26 01:53:26,138 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:53:26] 2025-11-26 01:53:26,166 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:53:26] 2025-11-26 01:53:26,167 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:53:26] 2025-11-26 01:53:26,168 [wrapper] pilotpid: 11296
[2025-11-25 20:53:26] 2025-11-26 01:53:26,169 [wrapper] Pilot exit status: 0
[2025-11-25 20:53:26] 2025-11-26 01:53:26,172 [wrapper] pandaids: 6895559890 6895559890 6895559890
[2025-11-25 20:53:26] 2025-11-26 01:53:26,184 [wrapper] cleanup supervisor_pilot   66182 11298
[2025-11-25 20:53:26] 2025-11-26 01:53:26,185 [wrapper] Test setup, not cleaning
[2025-11-25 20:53:26] 2025-11-26 01:53:26,186 [wrapper] apfmon messages muted
[2025-11-25 20:53:26] 2025-11-26 01:53:26,187 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:53:26] 2025-11-26 01:53:26,188 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:53:26]  *** Error codes and diagnostics ***
[2025-11-25 20:53:26]     "exeErrorCode": 0,
[2025-11-25 20:53:26]     "exeErrorDiag": "",
[2025-11-25 20:53:26]     "pilotErrorCode": 0,
[2025-11-25 20:53:26]     "pilotErrorDiag": "",
[2025-11-25 20:53:26]  *** Listing of results directory ***
[2025-11-25 20:53:26] total 1731380
[2025-11-25 20:53:26] drwx------ 5 boinc boinc      4096 Nov  5 12:16 pilot3
[2025-11-25 20:53:26] -rw-r--r-- 1 boinc boinc    576529 Nov 24 05:13 pilot3.tar.gz
[2025-11-25 20:53:26] -rw-r--r-- 1 boinc boinc      5112 Nov 24 06:06 queuedata.json
[2025-11-25 20:53:26] -rwx------ 1 boinc boinc     36292 Nov 24 06:10 runpilot2-wrapper.sh
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc       100 Nov 25 15:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:53:26] -rwxrwxr-x 1 boinc boinc      7986 Nov 25 15:57 run_atlas
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc       105 Nov 25 15:57 job.xml
[2025-11-25 20:53:26] -rw-rw-r-- 3 boinc boinc 413438616 Nov 25 15:57 EVNT.47483658._002036.pool.root.1
[2025-11-25 20:53:26] -rw-rw-r-- 3 boinc boinc 413438616 Nov 25 15:57 ATLAS.root_0
[2025-11-25 20:53:26] drwxrwxr-x 2 boinc boinc      4096 Nov 25 15:57 shared
[2025-11-25 20:53:26] -rw-rw-r-- 2 boinc boinc    590097 Nov 25 15:57 input.tar.gz
[2025-11-25 20:53:26] -rw-rw-r-- 2 boinc boinc     15847 Nov 25 15:57 start_atlas.sh
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc         0 Nov 25 15:57 boinc_setup_complete
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc         0 Nov 25 15:57 boinc_lockfile
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc      2784 Nov 25 18:04 pandaJob.out
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc    991877 Nov 25 18:05 agis_schedconf.cvmfs.json
[2025-11-25 20:53:26] -rw-r--r-- 1 boinc boinc      8834 Nov 25 18:08 init_data.xml
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc       532 Nov 25 20:49 boinc_task_state.xml
[2025-11-25 20:53:26] -rw------- 1 boinc boinc 935376790 Nov 25 20:52 HITS.47556161._000192.pool.root.1
[2025-11-25 20:53:26] -rw------- 1 boinc boinc      1037 Nov 25 20:52 memory_monitor_summary.json
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc   1516240 Nov 25 20:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:53:26] -rw------- 1 boinc boinc   1885039 Nov 25 20:52 log.47556161._000192.job.log.tgz.1
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc      8611 Nov 25 20:52 heartbeat.json
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc        96 Nov 25 20:53 pilot_heartbeat.json
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc        29 Nov 25 20:53 wrapper_checkpoint.txt
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc      8192 Nov 25 20:53 boinc_mmap_file
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc      4824 Nov 25 20:53 pilotlog.txt
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc   1484895 Nov 25 20:53 log.47556161._000192.job.log.1
[2025-11-25 20:53:26] -rw------- 1 boinc boinc       353 Nov 25 20:53 output.list
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc       620 Nov 25 20:53 runtime_log
[2025-11-25 20:53:26] -rw------- 1 boinc boinc   3389440 Nov 25 20:53 result.tar.gz
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc       921 Nov 25 20:53 wqZKDmsdjh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIdLKDmtpZDcm.diag
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc      8957 Nov 25 20:53 runtime_log.err
[2025-11-25 20:53:26] -rw-rw-r-- 1 boinc boinc     25743 Nov 25 20:53 stderr.txt
[2025-11-25 20:53:26] HITS file was successfully produced:
[2025-11-25 20:53:26] -rw------- 1 boinc boinc 935376790 Nov 25 20:52 shared/HITS.pool.root.1
[2025-11-25 20:53:26]  *** Contents of shared directory: ***
[2025-11-25 20:53:26] total 1321124
[2025-11-25 20:53:26] -rw-rw-r-- 3 boinc boinc 413438616 Nov 25 15:57 ATLAS.root_0
[2025-11-25 20:53:26] -rw-rw-r-- 2 boinc boinc    590097 Nov 25 15:57 input.tar.gz
[2025-11-25 20:53:26] -rw-rw-r-- 2 boinc boinc     15847 Nov 25 15:57 start_atlas.sh
[2025-11-25 20:53:26] -rw------- 1 boinc boinc 935376790 Nov 25 20:52 HITS.pool.root.1
[2025-11-25 20:53:26] -rw------- 1 boinc boinc   3389440 Nov 25 20:53 result.tar.gz
20:53:27 (2921): run_atlas exited; CPU time 117091.398547
20:53:27 (2921): called boinc_finish(0)

</stderr_txt>
]]>

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