Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:26:37 (2134): wrapper (7.7.26015): starting
04:26:37 (2134): wrapper: running run_atlas (--nthreads 8)
[2025-11-28 04:26:37] Arguments: --nthreads 8
[2025-11-28 04:26:37] Threads: 8
[2025-11-28 04:26:37] Checking for CVMFS
[2025-11-28 04:26:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-28 04:26:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-28 04:26:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-28 04:26:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-28 04:26:40] 2.11.2.0 1477 192825 134840 153395 2 84 20997682 25165825 1288 130560 13 65564203 99.878 32360726 2305 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-28 04:26:40] CVMFS is ok
[2025-11-28 04:26:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-28 04:26:40] Checking for apptainer binary...
[2025-11-28 04:26:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-28 04:26:40] Running /usr/bin/apptainer --version
[2025-11-28 04:26:40] apptainer version 1.3.2-1.el7
[2025-11-28 04:26:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-28 04:26:55] cg-vwn317.simple-grid.lan
[2025-11-28 04:26:55] apptainer works
[2025-11-28 04:26:55] Set ATHENA_PROC_NUMBER=8
[2025-11-28 04:26:55] Set ATHENA_CORE_NUMBER=8
[2025-11-28 04:26:55] Starting ATLAS job with PandaID=6891581210
[2025-11-28 04:26:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-29 04:31:02]  *** The last 200 lines of the pilot log: ***
[2025-11-29 04:31:02] 2025-11-29 03:30:12,865 | INFO     | monitor loop #5833: job 0:6891581210 is in state 'finished'
[2025-11-29 04:31:02] 2025-11-29 03:30:12,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:31:02] 2025-11-29 03:30:14,007 | INFO     | PID=5911 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 04:31:02] 2025-11-29 03:30:14,007 | INFO     | .. there are 9 such processes running
[2025-11-29 04:31:02] 2025-11-29 03:30:15,008 | INFO     | time since job start (86394s) is within the limit (172800.0s)
[2025-11-29 04:31:02] 2025-11-29 03:30:15,399 | INFO     | monitor loop #5834: job 0:6891581210 is in state 'finished'
[2025-11-29 04:31:02] 2025-11-29 03:30:15,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:31:02] 2025-11-29 03:30:17,017 | INFO     | time since job start (86396s) is within the limit (172800.0s)
[2025-11-29 04:31:02] 2025-11-29 03:30:17,904 | INFO     | monitor loop #5835: job 0:6891581210 is in state 'finished'
[2025-11-29 04:31:02] 2025-11-29 03:30:17,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:31:02] 2025-11-29 03:30:19,028 | INFO     | time since job start (86398s) is within the limit (172800.0s)
[2025-11-29 04:31:02] 2025-11-29 03:30:20,412 | INFO     | monitor loop #5836: job 0:6891581210 is in state 'finished'
[2025-11-29 04:31:02] 2025-11-29 03:30:20,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,035 | INFO     | time since job start (86400s) is within the limit (172800.0s)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,571 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-29 04:31:02] 2025-11-29 03:30:21,571 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-29 04:31:02] 2025-11-29 03:30:21,573 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6891581210/memory_monitor_summary.json (trf name=prmon)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,574 | INFO     | extracted standard info from prmon json
[2025-11-29 04:31:02] 2025-11-29 03:30:21,574 | INFO     | extracted standard memory fields from prmon json
[2025-11-29 04:31:02] 2025-11-29 03:30:21,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-29 04:31:02] 2025-11-29 03:30:21,615 | INFO     | fitting pss+swap vs Time
[2025-11-29 04:31:02] 2025-11-29 03:30:21,617 | INFO     | sum of square deviations: 863694567558.5768
[2025-11-29 04:31:02] 2025-11-29 03:30:21,697 | INFO     | sum of deviations: 2807210821434.3643
[2025-11-29 04:31:02] 2025-11-29 03:30:21,697 | INFO     | mean x: 1764344018.1144278
[2025-11-29 04:31:02] 2025-11-29 03:30:21,698 | INFO     | mean y: 2855955.562899787
[2025-11-29 04:31:02] 2025-11-29 03:30:21,698 | INFO     | intersect: -5731677763.207885
[2025-11-29 04:31:02] 2025-11-29 03:30:21,699 | INFO     | chi2: 20.49662907643718
[2025-11-29 04:31:02] 2025-11-29 03:30:21,702 | INFO     | sum of square deviations: 854519887714.8463
[2025-11-29 04:31:02] 2025-11-29 03:30:21,766 | INFO     | sum of deviations: 3267089998712.2866
[2025-11-29 04:31:02] 2025-11-29 03:30:21,767 | INFO     | mean x: 1764343865.6184022
[2025-11-29 04:31:02] 2025-11-29 03:30:21,767 | INFO     | mean y: 2863598.314550642
[2025-11-29 04:31:02] 2025-11-29 03:30:21,767 | INFO     | intersect: -6742760793.255837
[2025-11-29 04:31:02] 2025-11-29 03:30:21,768 | INFO     | chi2: 17.36043924925463
[2025-11-29 04:31:02] 2025-11-29 03:30:21,769 | INFO     | current chi2=17.36043924925463 (change=15.301002986817474 %)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,769 | INFO     | right removable region: 1401
[2025-11-29 04:31:02] 2025-11-29 03:30:21,771 | INFO     | sum of square deviations: 854518931234.8451
[2025-11-29 04:31:02] 2025-11-29 03:30:21,827 | INFO     | sum of deviations: 2242856976009.4326
[2025-11-29 04:31:02] 2025-11-29 03:30:21,827 | INFO     | mean x: 1764344170.6184022
[2025-11-29 04:31:02] 2025-11-29 03:30:21,827 | INFO     | mean y: 2865334.0606276747
[2025-11-29 04:31:02] 2025-11-29 03:30:21,827 | INFO     | intersect: -4628011158.558026
[2025-11-29 04:31:02] 2025-11-29 03:30:21,829 | INFO     | chi2: 16.301047846617372
[2025-11-29 04:31:02] 2025-11-29 03:30:21,829 | INFO     | current chi2=16.301047846617372 (change=20.4696158288927 %)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,829 | INFO     | left removable region: 10
[2025-11-29 04:31:02] 2025-11-29 03:30:21,831 | INFO     | sum of square deviations: 834562892698.4766
[2025-11-29 04:31:02] 2025-11-29 03:30:21,887 | INFO     | sum of deviations: 2352892932401.122
[2025-11-29 04:31:02] 2025-11-29 03:30:21,888 | INFO     | mean x: 1764344140.1272466
[2025-11-29 04:31:02] 2025-11-29 03:30:21,888 | INFO     | mean y: 2882349.4399712435
[2025-11-29 04:31:02] 2025-11-29 03:30:21,888 | INFO     | intersect: -4971353737.436446
[2025-11-29 04:31:02] 2025-11-29 03:30:21,889 | INFO     | chi2: 9.768414233221272
[2025-11-29 04:31:02] 2025-11-29 03:30:21,890 | INFO     | current memory leak: 2.82 B/s (using 1391 data points, chi2=9.77)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,891 | INFO     | could have reported an average CPU frequency of 1999 MHz (48 samples)
[2025-11-29 04:31:02] 2025-11-29 03:30:21,891 | INFO     | ..............................
[2025-11-29 04:31:02] 2025-11-29 03:30:21,891 | INFO     | . Timing measurements:
[2025-11-29 04:31:02] 2025-11-29 03:30:21,891 | INFO     | . get job = 0 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,891 | INFO     | . initial setup = 4 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,891 | INFO     | . payload setup = 174 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,892 | INFO     | . stage-in = 0 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,892 | INFO     | . payload execution = 85944 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,892 | INFO     | . stage-out = 5 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,892 | INFO     | . log creation = 2 s
[2025-11-29 04:31:02] 2025-11-29 03:30:21,892 | INFO     | ..............................
[2025-11-29 04:31:02] 2025-11-29 03:30:22,289 | INFO     | 
[2025-11-29 04:31:02] 2025-11-29 03:30:22,289 | INFO     | job summary report
[2025-11-29 04:31:02] 2025-11-29 03:30:22,289 | INFO     | --------------------------------------------------
[2025-11-29 04:31:02] 2025-11-29 03:30:22,289 | INFO     | PanDA job id: 6891581210
[2025-11-29 04:31:02] 2025-11-29 03:30:22,289 | INFO     | task id: 47493068
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | errors: (none)
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | pilot state: finished 
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | transexitcode: 0
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | exeerrorcode: 0
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | exeerrordiag: 
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | exitcode: 0
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | exitmsg: OK
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | cpuconsumptiontime: 322047 s
[2025-11-29 04:31:02] 2025-11-29 03:30:22,290 | INFO     | nevents: 1000
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | neventsw: 0
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | pid: 12519
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | pgrp: 12519
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | corecount: 8
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | event service: False
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | sizes: {0: 2284134, 1: 2284333, 12: 2284333, 23: 2284361, 34: 2284389, 44: 2284417, 55: 2284573, 66: 2284601, 77: 2284629, 87: 2284685, 91: 2284975, 98: 2285283, 8
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | --------------------------------------------------
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | 
[2025-11-29 04:31:02] 2025-11-29 03:30:22,291 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-11-29 04:31:02] 2025-11-29 03:30:22,666 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,666 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,668 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,668 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-29 04:31:02] 2025-11-29 03:30:22,668 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,668 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-29 04:31:02] 2025-11-29 03:30:22,668 | INFO     | job 6891581210 has completed (purged errors)
[2025-11-29 04:31:02] 2025-11-29 03:30:22,668 | INFO     | overall cleanup function is called
[2025-11-29 04:31:02] 2025-11-29 03:30:23,685 | INFO     | --- collectZombieJob: --- 10, [12519]
[2025-11-29 04:31:02] 2025-11-29 03:30:23,685 | INFO     | zombie collector waiting for pid 12519
[2025-11-29 04:31:02] 2025-11-29 03:30:23,685 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-29 04:31:02] 2025-11-29 03:30:23,685 | INFO     | collected zombie processes
[2025-11-29 04:31:02] 2025-11-29 03:30:23,686 | INFO     | will attempt to kill all subprocesses of pid=12519
[2025-11-29 04:31:02] 2025-11-29 03:30:23,849 | INFO     | process IDs to be killed: [12519] (in reverse order)
[2025-11-29 04:31:02] 2025-11-29 03:30:24,512 | WARNING  | found no corresponding commands to process id(s)
[2025-11-29 04:31:02] 2025-11-29 03:30:24,512 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-29 04:31:02] 2025-11-29 03:30:24,515 | INFO     | did not find any defunct processes belonging to 12519
[2025-11-29 04:31:02] 2025-11-29 03:30:24,520 | INFO     | did not find any defunct processes belonging to 12519
[2025-11-29 04:31:02] 2025-11-29 03:30:24,573 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-29 04:31:02] 2025-11-29 03:30:24,574 | INFO     | ready for new job
[2025-11-29 04:31:02] 2025-11-29 03:30:24,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-29 04:31:02] 2025-11-29 03:30:24,587 | INFO     | ***************************************
[2025-11-29 04:31:02] 2025-11-29 03:30:24,588 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-29 04:31:02] 2025-11-29 03:30:24,588 | INFO     | ***************************************
[2025-11-29 04:31:02] 2025-11-29 03:30:24,588 | INFO     | 
[2025-11-29 04:31:02] 2025-11-29 03:30:24,597 | INFO     | pilot is running in a VM
[2025-11-29 04:31:02] 2025-11-29 03:30:24,597 | INFO     | architecture information:
[2025-11-29 04:31:02] 2025-11-29 03:30:24,605 | INFO     | executing command: cat /etc/os-release
[2025-11-29 04:31:02] 2025-11-29 03:30:24,812 | INFO     | cat /etc/os-release:
[2025-11-29 04:31:02] NAME="CentOS Linux"
[2025-11-29 04:31:02] VERSION="7 (Core)"
[2025-11-29 04:31:02] ID="centos"
[2025-11-29 04:31:02] ID_LIKE="rhel fedora"
[2025-11-29 04:31:02] VERSION_ID="7"
[2025-11-29 04:31:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-29 04:31:02] ANSI_COLOR="0;31"
[2025-11-29 04:31:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-29 04:31:02] HOME_URL="https://www.centos.org/"
[2025-11-29 04:31:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-29 04:31:02] 
[2025-11-29 04:31:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-29 04:31:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-29 04:31:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-29 04:31:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-29 04:31:02] 
[2025-11-29 04:31:02] 2025-11-29 03:30:24,813 | INFO     | ***************************************
[2025-11-29 04:31:02] 2025-11-29 03:30:25,316 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-11-29 04:31:02] 2025-11-29 03:30:25,415 | INFO     | sufficient remaining disk space (493730398208 B)
[2025-11-29 04:31:02] 2025-11-29 03:30:25,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-29 04:31:02] 2025-11-29 03:30:25,415 | INFO     | current server update state: UPDATING_FINAL
[2025-11-29 04:31:02] 2025-11-29 03:30:25,415 | INFO     | update_server=False
[2025-11-29 04:31:02] 2025-11-29 03:30:25,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-29 04:31:02] 2025-11-29 03:30:25,416 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-29 04:31:02] 2025-11-29 03:30:25,429 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-29 04:31:02] 2025-11-29 03:30:25,429 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-29 04:31:02] 2025-11-29 03:30:25,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-29 04:31:02] 2025-11-29 03:30:25,429 | INFO     | will abort loop
[2025-11-29 04:31:02] 2025-11-29 03:30:26,113 | INFO     | all job control threads have been joined
[2025-11-29 04:31:02] 2025-11-29 03:30:26,137 | INFO     | all payload control threads have been joined
[2025-11-29 04:31:02] 2025-11-29 03:30:26,338 | INFO     | all data control threads have been joined
[2025-11-29 04:31:02] 2025-11-29 03:30:26,420 | INFO     | [job] retrieve thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:26,435 | INFO     | [job] job monitor thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:26,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-29 04:31:02] 2025-11-29 03:30:26,565 | INFO     | [payload] failed_post thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:26,961 | INFO     | [job] validate thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-29 04:31:02] 2025-11-29 03:30:27,119 | INFO     | [job] control thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,143 | INFO     | [payload] control thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,181 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,272 | INFO     | [payload] validate_pre thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,327 | INFO     | [payload] execute_payloads thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,344 | INFO     | [data] control thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,423 | INFO     | [data] copytool_out thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,822 | INFO     | [job] create_data_payload thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:27,916 | INFO     | [data] copytool_in thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:28,010 | INFO     | [payload] validate_post thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:28,082 | INFO     | [job] queue monitor thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:30,530 | INFO     | [data] queue_monitor thread has finished
[2025-11-29 04:31:02] 2025-11-29 03:30:51,732 | INFO     | [monitor] cgroup control has ended
[2025-11-29 04:31:02] 2025-11-29 03:30:52,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140111920633664)>', '<ExcThread(monitor, started 140111471691520)>']
[2025-11-29 04:31:02] 2025-11-29 03:30:54,231 | INFO     | PID=5911 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-29 04:31:02] 2025-11-29 03:30:54,231 | INFO     | .. there are 9 such processes running
[2025-11-29 04:31:02] 2025-11-29 03:30:54,232 | INFO     | found 0 job(s) in 20 queues
[2025-11-29 04:31:02] 2025-11-29 03:30:54,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-29 04:31:02] 2025-11-29 03:30:54,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-29 04:31:02] 2025-11-29 03:30:54,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-29 04:31:02] 2025-11-29 03:30:54,233 | INFO     | [monitor] control thread has ended
[2025-11-29 04:31:02] 2025-11-29 03:30:57,831 | INFO     | all workflow threads have been joined
[2025-11-29 04:31:02] 2025-11-29 03:30:57,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-29 04:31:02] 2025-11-29 03:30:57,831 | INFO     | traces error code: 0
[2025-11-29 04:31:02] 2025-11-29 03:30:57,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-29 04:31:02] 2025-11-29 03:30:58,154 [wrapper] ==== pilot stdout END ====
[2025-11-29 04:31:02] 2025-11-29 03:30:58,222 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-29 04:31:02] 2025-11-29 03:30:58,273 [wrapper] pilotpid: 5911
[2025-11-29 04:31:02] 2025-11-29 03:30:58,328 [wrapper] Pilot exit status: 0
[2025-11-29 04:31:02] 2025-11-29 03:30:58,607 [wrapper] pandaids: 6891581210
[2025-11-29 04:31:02] 2025-11-29 03:30:59,724 [wrapper] cleanup supervisor_pilot  8958 5912
[2025-11-29 04:31:02] 2025-11-29 03:30:59,781 [wrapper] Test setup, not cleaning
[2025-11-29 04:31:02] 2025-11-29 03:30:59,902 [wrapper] apfmon messages muted
[2025-11-29 04:31:02] 2025-11-29 03:31:00,032 [wrapper] ==== wrapper stdout END ====
[2025-11-29 04:31:02] 2025-11-29 03:31:00,134 [wrapper] ==== wrapper stderr END ====
[2025-11-29 04:31:02]  *** Error codes and diagnostics ***
[2025-11-29 04:31:02]     "exeErrorCode": 0,
[2025-11-29 04:31:02]     "exeErrorDiag": "",
[2025-11-29 04:31:02]     "pilotErrorCode": 0,
[2025-11-29 04:31:02]     "pilotErrorDiag": "",
[2025-11-29 04:31:02]  *** Listing of results directory ***
[2025-11-29 04:31:02] total 1335616
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc      5112 Nov 18 18:02 queuedata.json
[2025-11-29 04:31:02] -rwx------. 1 boinc boinc     36292 Nov 18 18:02 runpilot2-wrapper.sh
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc       100 Nov 28 04:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-29 04:31:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 28 04:26 run_atlas
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc       105 Nov 28 04:26 job.xml
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc      6391 Nov 28 04:26 init_data.xml
[2025-11-29 04:31:02] -rw-r--r--. 2 boinc boinc 410310537 Nov 28 04:26 EVNT.47493065._000416.pool.root.1
[2025-11-29 04:31:02] -rw-r--r--. 2 boinc boinc     15120 Nov 28 04:26 start_atlas.sh
[2025-11-29 04:31:02] drwxrwx--x. 2 boinc boinc        68 Nov 28 04:26 shared
[2025-11-29 04:31:02] -rw-r--r--. 2 boinc boinc    590100 Nov 28 04:26 input.tar.gz
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc         0 Nov 28 04:26 boinc_lockfile
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc      2773 Nov 28 04:26 pandaJob.out
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc    991850 Nov 28 04:30 agis_schedconf.cvmfs.json
[2025-11-29 04:31:02] drwx------. 5 boinc boinc      4096 Nov 28 04:30 pilot3
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc       533 Nov 29 04:04 boinc_task_state.xml
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc 925454559 Nov 29 04:27 HITS.47493068._004156.pool.root.1
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc      1033 Nov 29 04:28 memory_monitor_summary.json
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc   1516240 Nov 29 04:28 agis_ddmendpoints.agis.ALL.json
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc   2481786 Nov 29 04:28 log.47493068._004156.job.log.tgz.1
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc      7262 Nov 29 04:30 heartbeat.json
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc      8192 Nov 29 04:30 boinc_mmap_file
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc        29 Nov 29 04:30 wrapper_checkpoint.txt
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc        95 Nov 29 04:30 pilot_heartbeat.json
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc      5070 Nov 29 04:30 pilotlog.txt
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc  11522821 Nov 29 04:31 log.47493068._004156.job.log.1
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc       353 Nov 29 04:31 output.list
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc       620 Nov 29 04:31 runtime_log
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc  14018560 Nov 29 04:31 result.tar.gz
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc      8717 Nov 29 04:31 runtime_log.err
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc       662 Nov 29 04:31 3fyKDm7Gef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmVFKDm7GZmkm.diag
[2025-11-29 04:31:02] -rw-r--r--. 1 boinc boinc     21428 Nov 29 04:31 stderr.txt
[2025-11-29 04:31:02] HITS file was successfully produced:
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc 925454559 Nov 29 04:27 shared/HITS.pool.root.1
[2025-11-29 04:31:02]  *** Contents of shared directory: ***
[2025-11-29 04:31:02] total 1318752
[2025-11-29 04:31:02] -rw-r--r--. 2 boinc boinc 410310537 Nov 28 04:26 ATLAS.root_0
[2025-11-29 04:31:02] -rw-r--r--. 2 boinc boinc     15120 Nov 28 04:26 start_atlas.sh
[2025-11-29 04:31:02] -rw-r--r--. 2 boinc boinc    590100 Nov 28 04:26 input.tar.gz
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc 925454559 Nov 29 04:27 HITS.pool.root.1
[2025-11-29 04:31:02] -rw-------. 1 boinc boinc  14018560 Nov 29 04:31 result.tar.gz
04:31:04 (2134): run_atlas exited; CPU time 322624.927203
04:31:04 (2134): called boinc_finish(0)

</stderr_txt>
]]>

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