Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:29:40 (910604): wrapper (7.7.26015): starting
18:29:40 (910604): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 18:29:40] Arguments: --nthreads 8
[2025-11-25 18:29:40] Threads: 8
[2025-11-25 18:29:40] Checking for CVMFS
[2025-11-25 18:29:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 18:29:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 18:29:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 18:29:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 18:29:41] 2.13.2.0 7153 35057 232348 153302 2 238 37236501 40960000 26997 16776704 0 123188514 99.553 135065293 34191 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 18:29:41] CVMFS is ok
[2025-11-25 18:29:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 18:29:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 18:29:41] Further information can be found at the LHC@home message board.
[2025-11-25 18:29:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 18:29:41] Checking for apptainer binary...
[2025-11-25 18:29:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 18:29:41] Running /usr/bin/apptainer --version
[2025-11-25 18:29:41] apptainer version 1.4.4-1.el9
[2025-11-25 18:29:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 18:29:41] c-212-15.aglt2.org
[2025-11-25 18:29:41] apptainer works
[2025-11-25 18:29:41] Set ATHENA_PROC_NUMBER=8
[2025-11-25 18:29:41] Set ATHENA_CORE_NUMBER=8
[2025-11-25 18:29:41] Starting ATLAS job with PandaID=6896243534
[2025-11-25 18:29:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:00:13 (910604): BOINC client no longer exists - exiting
20:00:13 (910604): timer handler: client dead, exiting
20:55:04 (3070570): wrapper (7.7.26015): starting
20:55:04 (3070570): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 20:55:04] Arguments: --nthreads 8
[2025-11-25 20:55:04] Threads: 8
[2025-11-25 20:55:04] This job has been restarted, cleaning up previous attempt
[2025-11-25 20:55:04] Checking for CVMFS
[2025-11-25 20:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:55:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:55:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:55:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:55:05] 2.13.2.0 7153 35202 238332 153304 1 346 27222873 40960001 29644 16776704 0 125584435 99.550 137579053 34100 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 20:55:05] CVMFS is ok
[2025-11-25 20:55:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:55:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:55:05] Further information can be found at the LHC@home message board.
[2025-11-25 20:55:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:55:05] Checking for apptainer binary...
[2025-11-25 20:55:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:55:05] Running /usr/bin/apptainer --version
[2025-11-25 20:55:05] apptainer version 1.4.4-1.el9
[2025-11-25 20:55:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:55:05] c-212-15.aglt2.org
[2025-11-25 20:55:05] apptainer works
[2025-11-25 20:55:05] Set ATHENA_PROC_NUMBER=8
[2025-11-25 20:55:05] Set ATHENA_CORE_NUMBER=8
[2025-11-25 20:55:05] Starting ATLAS job with PandaID=6896243534
[2025-11-25 20:55:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:39:26]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:39:26] 2025-11-26 11:05:59,569 | INFO     | time since job start (33035s) is within the limit (172800.0s)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,585 | INFO     | time since job start (33037s) is within the limit (172800.0s)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,789 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 06:39:26] 2025-11-26 11:06:01,805 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3343.0886354166673
[2025-11-26 06:39:26] 2025-11-26 11:06:01,820 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896243534/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,821 | INFO     | extracted standard info from prmon json
[2025-11-26 06:39:26] 2025-11-26 11:06:01,821 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:39:26] 2025-11-26 11:06:01,821 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:39:26] 2025-11-26 11:06:01,829 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:39:26] 2025-11-26 11:06:01,830 | INFO     | sum of square deviations: 49099759889.12759
[2025-11-26 06:39:26] 2025-11-26 11:06:01,836 | INFO     | sum of deviations: 401099786724.3956
[2025-11-26 06:39:26] 2025-11-26 11:06:01,836 | INFO     | mean x: 1764138635.7855823
[2025-11-26 06:39:26] 2025-11-26 11:06:01,836 | INFO     | mean y: 2856756.537892791
[2025-11-26 06:39:26] 2025-11-26 11:06:01,837 | INFO     | intersect: -14408530023.431879
[2025-11-26 06:39:26] 2025-11-26 11:06:01,837 | INFO     | chi2: 6.9249275121746345
[2025-11-26 06:39:26] 2025-11-26 11:06:01,838 | INFO     | sum of square deviations: 47751266423.03742
[2025-11-26 06:39:26] 2025-11-26 11:06:01,843 | INFO     | sum of deviations: 596331856921.109
[2025-11-26 06:39:26] 2025-11-26 11:06:01,843 | INFO     | mean x: 1764138483.3022387
[2025-11-26 06:39:26] 2025-11-26 11:06:01,843 | INFO     | mean y: 2878838.8264925373
[2025-11-26 06:39:26] 2025-11-26 11:06:01,844 | INFO     | intersect: -22028201306.643192
[2025-11-26 06:39:26] 2025-11-26 11:06:01,844 | INFO     | chi2: 3.2821221968704455
[2025-11-26 06:39:26] 2025-11-26 11:06:01,844 | INFO     | current chi2=3.2821221968704455 (change=52.604237501400775 %)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,845 | INFO     | sum of square deviations: 46427474917.02036
[2025-11-26 06:39:26] 2025-11-26 11:06:01,851 | INFO     | sum of deviations: 629449947294.3134
[2025-11-26 06:39:26] 2025-11-26 11:06:01,851 | INFO     | mean x: 1764138330.8060265
[2025-11-26 06:39:26] 2025-11-26 11:06:01,851 | INFO     | mean y: 2882629.527306968
[2025-11-26 06:39:26] 2025-11-26 11:06:01,851 | INFO     | intersect: -23914782100.902477
[2025-11-26 06:39:26] 2025-11-26 11:06:01,852 | INFO     | chi2: 2.9628363003867686
[2025-11-26 06:39:26] 2025-11-26 11:06:01,852 | INFO     | current chi2=2.9628363003867686 (change=9.72803196627234 %)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,852 | INFO     | right removable region: 530
[2025-11-26 06:39:26] 2025-11-26 11:06:01,853 | INFO     | sum of square deviations: 47750709922.640434
[2025-11-26 06:39:26] 2025-11-26 11:06:01,859 | INFO     | sum of deviations: 236481033720.6474
[2025-11-26 06:39:26] 2025-11-26 11:06:01,859 | INFO     | mean x: 1764138788.300373
[2025-11-26 06:39:26] 2025-11-26 11:06:01,859 | INFO     | mean y: 2875330.2630597013
[2025-11-26 06:39:26] 2025-11-26 11:06:01,859 | INFO     | intersect: -8733861044.12452
[2025-11-26 06:39:26] 2025-11-26 11:06:01,860 | INFO     | chi2: 4.132065370580104
[2025-11-26 06:39:26] 2025-11-26 11:06:01,860 | INFO     | current chi2=4.132065370580104 (change=40.330561391212136 %)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,860 | INFO     | sum of square deviations: 46426721694.406906
[2025-11-26 06:39:26] 2025-11-26 11:06:01,866 | INFO     | sum of deviations: 208567000567.2429
[2025-11-26 06:39:26] 2025-11-26 11:06:01,867 | INFO     | mean x: 1764138940.8079095
[2025-11-26 06:39:26] 2025-11-26 11:06:01,867 | INFO     | mean y: 2878541.561205273
[2025-11-26 06:39:26] 2025-11-26 11:06:01,867 | INFO     | intersect: -7922323885.826747
[2025-11-26 06:39:26] 2025-11-26 11:06:01,867 | INFO     | chi2: 4.095881135831008
[2025-11-26 06:39:26] 2025-11-26 11:06:01,867 | INFO     | current chi2=4.095881135831008 (change=0.8756936665795347 %)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,868 | INFO     | left removable region: 20
[2025-11-26 06:39:26] 2025-11-26 11:06:01,868 | INFO     | sum of square deviations: 41133732903.2627
[2025-11-26 06:39:26] 2025-11-26 11:06:01,874 | INFO     | sum of deviations: 406646671670.9064
[2025-11-26 06:39:26] 2025-11-26 11:06:01,874 | INFO     | mean x: 1764138910.345098
[2025-11-26 06:39:26] 2025-11-26 11:06:01,874 | INFO     | mean y: 2908527.182352941
[2025-11-26 06:39:26] 2025-11-26 11:06:01,874 | INFO     | intersect: -17437308190.908684
[2025-11-26 06:39:26] 2025-11-26 11:06:01,875 | INFO     | chi2: 0.0706326143069769
[2025-11-26 06:39:26] 2025-11-26 11:06:01,875 | INFO     | current memory leak: 9.89 B/s (using 510 data points, chi2=0.07)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | could have reported an average CPU frequency of 3325 MHz (22 samples)
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | ..............................
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . Timing measurements:
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . get job = 0 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . initial setup = 1 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . payload setup = 11 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . stage-in = 0 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . payload execution = 32987 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . stage-out = 3 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,876 | INFO     | . log creation = 0 s
[2025-11-26 06:39:26] 2025-11-26 11:06:01,877 | INFO     | ..............................
[2025-11-26 06:39:26] 2025-11-26 11:06:02,001 | INFO     | 
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | job summary report
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | --------------------------------------------------
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | PanDA job id: 6896243534
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | task id: 47556161
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | errors: (none)
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | pilot state: finished 
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | transexitcode: 0
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | exeerrorcode: 0
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | exeerrordiag: 
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | exitcode: 0
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | exitmsg: OK
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | cpuconsumptiontime: 185624 s
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | nevents: 1000
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | neventsw: 0
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | pid: 3083138
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | pgrp: 3083138
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | corecount: 8
[2025-11-26 06:39:26] 2025-11-26 11:06:02,002 | INFO     | event service: False
[2025-11-26 06:39:26] 2025-11-26 11:06:02,003 | INFO     | sizes: {0: 2284262, 8: 2284524, 11: 2284552, 33003: 2324515, 33006: 2333509, 33007: 2333565, 33018: 2333939}
[2025-11-26 06:39:26] 2025-11-26 11:06:02,003 | INFO     | --------------------------------------------------
[2025-11-26 06:39:26] 2025-11-26 11:06:02,003 | INFO     | 
[2025-11-26 06:39:26] 2025-11-26 11:06:02,003 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 06:39:26] 2025-11-26 11:06:02,028 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:39:26] 2025-11-26 11:06:02,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:39:26] 2025-11-26 11:06:02,030 | INFO     | job 6896243534 has completed (purged errors)
[2025-11-26 06:39:26] 2025-11-26 11:06:02,030 | INFO     | overall cleanup function is called
[2025-11-26 06:39:26] 2025-11-26 11:06:03,045 | INFO     | --- collectZombieJob: --- 10, [3083138]
[2025-11-26 06:39:26] 2025-11-26 11:06:03,045 | INFO     | zombie collector waiting for pid 3083138
[2025-11-26 06:39:26] 2025-11-26 11:06:03,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:39:26] 2025-11-26 11:06:03,045 | INFO     | collected zombie processes
[2025-11-26 06:39:26] 2025-11-26 11:06:03,045 | INFO     | will attempt to kill all subprocesses of pid=3083138
[2025-11-26 06:39:26] 2025-11-26 11:06:03,722 | INFO     | process IDs to be killed: [3083138] (in reverse order)
[2025-11-26 06:39:26] 2025-11-26 11:06:04,097 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:39:26] 2025-11-26 11:06:04,098 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:39:26] 2025-11-26 11:06:04,123 | INFO     | did not find any defunct processes belonging to 3083138
[2025-11-26 06:39:26] 2025-11-26 11:06:04,148 | INFO     | did not find any defunct processes belonging to 3083138
[2025-11-26 06:39:26] 2025-11-26 11:06:04,185 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:39:26] 2025-11-26 11:06:04,185 | INFO     | ready for new job
[2025-11-26 06:39:26] 2025-11-26 11:06:04,185 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:39:26] 2025-11-26 11:06:04,205 | INFO     | ***************************************
[2025-11-26 06:39:26] 2025-11-26 11:06:04,206 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:39:26] 2025-11-26 11:06:04,206 | INFO     | ***************************************
[2025-11-26 06:39:26] 2025-11-26 11:06:04,206 | INFO     | 
[2025-11-26 06:39:26] 2025-11-26 11:06:04,235 | INFO     | architecture information:
[2025-11-26 06:39:26] 2025-11-26 11:06:04,267 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:39:26] 2025-11-26 11:06:04,344 | INFO     | cat /etc/os-release:
[2025-11-26 06:39:26] NAME="CentOS Linux"
[2025-11-26 06:39:26] VERSION="7 (Core)"
[2025-11-26 06:39:26] ID="centos"
[2025-11-26 06:39:26] ID_LIKE="rhel fedora"
[2025-11-26 06:39:26] VERSION_ID="7"
[2025-11-26 06:39:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:39:26] ANSI_COLOR="0;31"
[2025-11-26 06:39:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:39:26] HOME_URL="https://www.centos.org/"
[2025-11-26 06:39:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:39:26] 
[2025-11-26 06:39:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:39:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:39:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:39:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:39:26] 
[2025-11-26 06:39:26] 2025-11-26 11:06:04,344 | INFO     | ***************************************
[2025-11-26 06:39:26] 2025-11-26 11:06:04,857 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 06:39:26] 2025-11-26 11:06:04,939 | INFO     | sufficient remaining disk space (119045881856 B)
[2025-11-26 06:39:26] 2025-11-26 11:06:04,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:39:26] 2025-11-26 11:06:04,940 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:39:26] 2025-11-26 11:06:04,940 | INFO     | update_server=False
[2025-11-26 06:39:26] 2025-11-26 11:06:04,940 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:39:26] 2025-11-26 11:06:05,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:39:26] 2025-11-26 11:06:05,535 | INFO     | aborting loop
[2025-11-26 06:39:26] 2025-11-26 11:06:05,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:39:26] 2025-11-26 11:06:05,723 | INFO     | all payload control threads have been joined
[2025-11-26 06:39:26] 2025-11-26 11:06:05,946 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:05,957 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:05,981 | INFO     | all data control threads have been joined
[2025-11-26 06:39:26] 2025-11-26 11:06:06,030 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,076 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,126 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:39:26] 2025-11-26 11:06:06,419 | INFO     | [job] validate thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,541 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,547 | INFO     | all job control threads have been joined
[2025-11-26 06:39:26] 2025-11-26 11:06:06,729 | INFO     | [payload] control thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,742 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,804 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:06,987 | INFO     | [data] control thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:07,019 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:07,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:39:26] 2025-11-26 11:06:07,553 | INFO     | [job] control thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:08,036 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:08,132 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:09,710 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:15,567 | INFO     | job.realtimelogging is not enabled
[2025-11-26 06:39:26] 2025-11-26 11:06:16,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:39:26] 2025-11-26 11:06:21,370 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:39:26] 2025-11-26 11:06:22,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140600638039872)>', '<ExcThread(monitor, started 140600150046464)>']
[2025-11-26 06:39:26] 2025-11-26 11:06:27,597 | INFO     | all workflow threads have been joined
[2025-11-26 06:39:26] 2025-11-26 11:06:27,597 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:39:26] 2025-11-26 11:06:27,597 | INFO     | traces error code: 0
[2025-11-26 06:39:26] 2025-11-26 11:06:27,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:39:26] 2025-11-26 11:06:35,427 | INFO     | PID=3074626 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:39:26] 2025-11-26 11:06:35,427 | INFO     | .. there are 56 such processes running
[2025-11-26 06:39:26] 2025-11-26 11:06:35,428 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:39:26] 2025-11-26 11:06:35,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:39:26] 2025-11-26 11:06:35,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:39:26] 2025-11-26 11:06:35,428 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:39:26] 2025-11-26 11:06:35,428 | INFO     | [monitor] control thread has ended
[2025-11-26 06:39:26] 2025-11-26 11:06:35,624 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:39:26] 2025-11-26 11:06:35,642 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:39:26] 2025-11-26 11:06:35,705 [wrapper] pilotpid: 3074626
[2025-11-26 06:39:26] 2025-11-26 11:06:35,744 [wrapper] Pilot exit status: 0
[2025-11-26 06:39:26] 2025-11-26 11:06:35,847 [wrapper] pandaids: 6896243534 6896243534
[2025-11-26 06:39:26] 2025-11-26 11:06:35,977 [wrapper] cleanup supervisor_pilot  423621 3074627
[2025-11-26 06:39:26] 2025-11-26 11:06:35,979 [wrapper] Test setup, not cleaning
[2025-11-26 06:39:26] 2025-11-26 11:06:35,981 [wrapper] apfmon messages muted
[2025-11-26 06:39:26] 2025-11-26 11:06:35,983 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:39:26] 2025-11-26 11:06:35,987 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:39:26]  *** Error codes and diagnostics ***
[2025-11-26 06:39:26]     "exeErrorCode": 0,
[2025-11-26 06:39:26]     "exeErrorDiag": "",
[2025-11-26 06:39:26]     "pilotErrorCode": 0,
[2025-11-26 06:39:26]     "pilotErrorDiag": "",
[2025-11-26 06:39:26]  *** Listing of results directory ***
[2025-11-26 06:39:26] total 1714668
[2025-11-26 06:39:26] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 16:08 pilot3.tar.gz
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 17:01 queuedata.json
[2025-11-26 06:39:26] -rwx------. 1 boincer umatlas     36292 Nov 24 17:01 runpilot2-wrapper.sh
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas       100 Nov 25 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:39:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 18:29 run_atlas
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas       105 Nov 25 18:29 job.xml
[2025-11-26 06:39:26] -rw-r--r--. 3 boincer umatlas 409318488 Nov 25 18:29 EVNT.47483658._002064.pool.root.1
[2025-11-26 06:39:26] -rw-r--r--. 3 boincer umatlas 409318488 Nov 25 18:29 ATLAS.root_0
[2025-11-26 06:39:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 18:29 shared
[2025-11-26 06:39:26] -rw-r--r--. 2 boincer umatlas    590096 Nov 25 18:29 input.tar.gz
[2025-11-26 06:39:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:29 start_atlas.sh
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas         0 Nov 25 18:29 boinc_lockfile
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 20:55 pandaJob.out
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas        57 Nov 25 20:55 setup.sh.local
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas    991877 Nov 25 20:55 agis_schedconf.cvmfs.json
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas       533 Nov 26 05:57 boinc_task_state.xml
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas 920622513 Nov 26 06:04 HITS.47556161._000473.pool.root.1
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas      1063 Nov 26 06:05 memory_monitor_summary.json
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas   1516240 Nov 26 06:05 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas   1821562 Nov 26 06:05 log.47556161._000473.job.log.tgz.1
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas      7931 Nov 26 06:06 heartbeat.json
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas       823 Nov 26 06:06 pilotlog.txt
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas        97 Nov 26 06:06 pilot_heartbeat.json
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas   4496857 Nov 26 06:06 log.47556161._000473.job.log.1
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas       353 Nov 26 06:06 output.list
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas       620 Nov 26 06:06 runtime_log
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas   6338560 Nov 26 06:06 result.tar.gz
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas      9428 Nov 26 06:06 runtime_log.err
[2025-11-26 06:39:26] -rw-------. 1 boincer umatlas       789 Nov 26 06:06 FSjMDm6nth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzwLKDmHlGcin.diag
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 06:39 init_data.xml
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas        29 Nov 26 06:39 wrapper_checkpoint.txt
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 06:39 boinc_mmap_file
[2025-11-26 06:39:26] -rw-r--r--. 1 boincer umatlas     23562 Nov 26 06:39 stderr.txt
[2025-11-26 06:39:27] HITS file was successfully produced:
[2025-11-26 06:39:27] -rw-------. 1 boincer umatlas 920622513 Nov 26 06:04 shared/HITS.pool.root.1
[2025-11-26 06:39:27]  *** Contents of shared directory: ***
[2025-11-26 06:39:27] total 1305572
[2025-11-26 06:39:27] -rw-r--r--. 3 boincer umatlas 409318488 Nov 25 18:29 ATLAS.root_0
[2025-11-26 06:39:27] -rw-r--r--. 2 boincer umatlas    590096 Nov 25 18:29 input.tar.gz
[2025-11-26 06:39:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 18:29 start_atlas.sh
[2025-11-26 06:39:27] -rw-------. 1 boincer umatlas 920622513 Nov 26 06:04 HITS.pool.root.1
[2025-11-26 06:39:27] -rw-------. 1 boincer umatlas   6338560 Nov 26 06:06 result.tar.gz
06:39:29 (3070570): run_atlas exited; CPU time 185406.287723
06:39:29 (3070570): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN