Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:48:04 (3992201): wrapper (7.7.26015): starting
11:48:04 (3992201): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 11:48:04] Arguments: --nthreads 8
[2025-11-25 11:48:04] Threads: 8
[2025-11-25 11:48:04] Checking for CVMFS
[2025-11-25 11:48:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 11:48:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 11:48:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 11:48:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 11:48:06] 2.11.3.0 1928964 27387 189688 153295 1 134 39124469 45568001 21050 130560 0 174517469 99.772 112612698 5497 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 11:48:06] CVMFS is ok
[2025-11-25 11:48:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 11:48:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 11:48:06] Further information can be found at the LHC@home message board.
[2025-11-25 11:48:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 11:48:06] Checking for apptainer binary...
[2025-11-25 11:48:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 11:48:06] Running /usr/bin/apptainer --version
[2025-11-25 11:48:06] apptainer version 1.4.1-1.el9
[2025-11-25 11:48:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 11:48:07] wns0006.triumf.lcg
[2025-11-25 11:48:07] apptainer works
[2025-11-25 11:48:07] Set ATHENA_PROC_NUMBER=8
[2025-11-25 11:48:07] Set ATHENA_CORE_NUMBER=8
[2025-11-25 11:48:07] Starting ATLAS job with PandaID=6896765510
[2025-11-25 11:48:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:56:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | ..............................
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . Timing measurements:
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . get job = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . initial setup = 5 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . payload setup = 41 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . stage-in = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . payload execution = 138 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . stage-out = 1 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . log creation = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | ..............................
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 11:56:09] 2025-11-25 19:55:34,452 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896765510/pilotlog.txt
[2025-11-25 11:56:09] 2025-11-25 19:55:34,491 | INFO     | monitor loop #97: job 0:6896765510 is in state 'failed'
[2025-11-25 11:56:09] 2025-11-25 19:55:34,492 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,498 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 11:56:09] - Log from pilotlog.txt -
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 11:56:09] 2025-11-25 19:55:34,450 | WARNING  | wrong length of table data, x=[1764100267.0, 1764100328.0], y=[1187.0, 888390.0] (must be same and length>=4)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | ..............................
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . Timing measurements:
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . get job = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . initial setup = 5 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . payload setup = 41 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . stage-in = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . payload execution = 138 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . stage-out = 1 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . log creation = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | ..............................
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 11:56:09] 2025-11-25 19:55:34,452 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896765510/pilotlog.txt
[2025-11-25 11:56:09] 2025-11-25 19:55:34,491 | INFO     | monitor loop #97: job 0:6896765510 is in state 'failed'
[2025-11-25 11:56:09] 2025-11-25 19:55:34,492 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,499 | WARNING  | 
[2025-11-25 11:56:09] [begin log extracts]
[2025-11-25 11:56:09] - Log from pilotlog.txt -
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 11:56:09] 2025-11-25 19:55:34,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 11:56:09] 2025-11-25 19:55:34,450 | WARNING  | wrong length of table data, x=[1764100267.0, 1764100328.0], y=[1187.0, 888390.0] (must be same and length>=4)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | ..............................
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . Timing measurements:
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . get job = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . initial setup = 5 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . payload setup = 41 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . stage-in = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . payload execution = 138 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . stage-out = 1 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | . log creation = 0 s
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | ..............................
[2025-11-25 11:56:09] 2025-11-25 19:55:34,451 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 11:56:09] 2025-11-25 19:55:34,452 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6896765510/pilotlog.txt
[2025-11-25 11:56:09] 2025-11-25 19:55:34,491 | INFO     | monitor loop #97: job 0:6896765510 is in state 'failed'
[2025-11-25 11:56:09] 2025-11-25 19:55:34,492 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-25 11:56:09] [end log extracts]
[2025-11-25 11:56:09] 2025-11-25 19:55:34,499 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 11:56:09] 2025-11-25 19:55:34,500 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 11:56:09] 2025-11-25 19:55:35,293 | INFO     | 
[2025-11-25 11:56:09] 2025-11-25 19:55:35,294 | INFO     | job summary report
[2025-11-25 11:56:09] 2025-11-25 19:55:35,294 | INFO     | --------------------------------------------------
[2025-11-25 11:56:09] 2025-11-25 19:55:35,294 | INFO     | PanDA job id: 6896765510
[2025-11-25 11:56:09] 2025-11-25 19:55:35,294 | INFO     | task id: 47556185
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 11:52:58,880 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | pilot state: failed 
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | transexitcode: 65
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | exeerrorcode: 65
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | exitcode: 65
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | cpuconsumptiontime: 44 s
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | nevents: 0
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | neventsw: 0
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | pid: 4003115
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | pgrp: 4003115
[2025-11-25 11:56:09] 2025-11-25 19:55:35,295 | INFO     | corecount: 8
[2025-11-25 11:56:09] 2025-11-25 19:55:35,296 | INFO     | event service: False
[2025-11-25 11:56:09] 2025-11-25 19:55:35,296 | INFO     | sizes: {0: 2284032, 1: 2284116, 2: 2284315, 14: 2284315, 24: 2284343, 27: 2284633, 35: 2284789, 183: 2310232, 184: 2310208, 186: 2314582, 331: 2314720}
[2025-11-25 11:56:09] 2025-11-25 19:55:35,297 | INFO     | --------------------------------------------------
[2025-11-25 11:56:09] 2025-11-25 19:55:35,297 | INFO     | 
[2025-11-25 11:56:09] 2025-11-25 19:55:35,297 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 11:56:09] 2025-11-25 19:55:35,588 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | job 6896765510 has completed (purged errors)
[2025-11-25 11:56:09] 2025-11-25 19:55:35,590 | INFO     | overall cleanup function is called
[2025-11-25 11:56:09] 2025-11-25 19:55:36,631 | INFO     | --- collectZombieJob: --- 10, [4003115]
[2025-11-25 11:56:09] 2025-11-25 19:55:36,631 | INFO     | zombie collector waiting for pid 4003115
[2025-11-25 11:56:09] 2025-11-25 19:55:36,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:56:09] 2025-11-25 19:55:36,631 | INFO     | collected zombie processes
[2025-11-25 11:56:09] 2025-11-25 19:55:36,632 | INFO     | will attempt to kill all subprocesses of pid=4003115
[2025-11-25 11:56:09] 2025-11-25 19:55:37,131 | INFO     | process IDs to be killed: [4003115] (in reverse order)
[2025-11-25 11:56:09] 2025-11-25 19:55:37,216 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:56:09] 2025-11-25 19:55:37,217 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:56:09] 2025-11-25 19:55:37,232 | INFO     | did not find any defunct processes belonging to 4003115
[2025-11-25 11:56:09] 2025-11-25 19:55:37,277 | INFO     | did not find any defunct processes belonging to 4003115
[2025-11-25 11:56:09] 2025-11-25 19:55:37,278 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:56:09] 2025-11-25 19:55:37,278 | INFO     | ready for new job
[2025-11-25 11:56:09] 2025-11-25 19:55:37,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:56:09] 2025-11-25 19:55:37,298 | INFO     | ***************************************
[2025-11-25 11:56:09] 2025-11-25 19:55:37,299 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:56:09] 2025-11-25 19:55:37,299 | INFO     | ***************************************
[2025-11-25 11:56:09] 2025-11-25 19:55:37,299 | INFO     | 
[2025-11-25 11:56:09] 2025-11-25 19:55:37,300 | INFO     | architecture information:
[2025-11-25 11:56:09] 2025-11-25 19:55:37,309 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:56:09] 2025-11-25 19:55:37,345 | INFO     | cat /etc/os-release:
[2025-11-25 11:56:09] NAME="CentOS Linux"
[2025-11-25 11:56:09] VERSION="7 (Core)"
[2025-11-25 11:56:09] ID="centos"
[2025-11-25 11:56:09] ID_LIKE="rhel fedora"
[2025-11-25 11:56:09] VERSION_ID="7"
[2025-11-25 11:56:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:56:09] ANSI_COLOR="0;31"
[2025-11-25 11:56:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:56:09] HOME_URL="https://www.centos.org/"
[2025-11-25 11:56:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:56:09] 
[2025-11-25 11:56:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:56:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:56:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:56:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:56:09] 
[2025-11-25 11:56:09] 2025-11-25 19:55:37,345 | INFO     | ***************************************
[2025-11-25 11:56:09] 2025-11-25 19:55:37,849 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 11:56:09] 2025-11-25 19:55:37,965 | INFO     | sufficient remaining disk space (1218483060736 B)
[2025-11-25 11:56:09] 2025-11-25 19:55:37,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:56:09] 2025-11-25 19:55:37,965 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:56:09] 2025-11-25 19:55:37,965 | INFO     | update_server=False
[2025-11-25 11:56:09] 2025-11-25 19:55:37,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:56:09] 2025-11-25 19:55:38,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:56:09] 2025-11-25 19:55:38,017 | INFO     | aborting loop
[2025-11-25 11:56:09] 2025-11-25 19:55:38,505 | INFO     | all data control threads have been joined
[2025-11-25 11:56:09] 2025-11-25 19:55:38,715 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:56:09] 2025-11-25 19:55:38,928 | INFO     | all job control threads have been joined
[2025-11-25 11:56:09] 2025-11-25 19:55:38,971 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,023 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,090 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,353 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,418 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,466 | INFO     | all payload control threads have been joined
[2025-11-25 11:56:09] 2025-11-25 19:55:39,512 | INFO     | [data] control thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,514 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,622 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:39,942 | INFO     | [job] control thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:40,038 | INFO     | [job] validate thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:40,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:40,091 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:40,310 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:56:09] 2025-11-25 19:55:40,472 | INFO     | [payload] control thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:40,722 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:40,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:56:09] 2025-11-25 19:55:41,316 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:44,898 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:56:09] 2025-11-25 19:55:59,315 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:56:09] 2025-11-25 19:56:00,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735154947904)>', '<ExcThread(monitor, started 139734827370240)>']
[2025-11-25 11:56:09] 2025-11-25 19:56:05,686 | INFO     | all workflow threads have been joined
[2025-11-25 11:56:09] 2025-11-25 19:56:05,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:56:09] 2025-11-25 19:56:05,687 | INFO     | traces error code: 0
[2025-11-25 11:56:09] 2025-11-25 19:56:05,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:56:09] 2025-11-25 19:56:08,244 | INFO     | PID=3995967 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:56:09] 2025-11-25 19:56:08,244 | INFO     | .. there are 19 such processes running
[2025-11-25 11:56:09] 2025-11-25 19:56:08,248 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:56:09] 2025-11-25 19:56:08,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:56:09] 2025-11-25 19:56:08,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:56:09] 2025-11-25 19:56:08,248 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:56:09] 2025-11-25 19:56:08,248 | INFO     | [monitor] control thread has ended
[2025-11-25 11:56:09] 2025-11-25 19:56:08,450 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:56:09] 2025-11-25 19:56:08,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:56:09] 2025-11-25 19:56:08,453 [wrapper] pilotpid: 3995967
[2025-11-25 11:56:09] 2025-11-25 19:56:08,455 [wrapper] Pilot exit status: 0
[2025-11-25 11:56:09] 2025-11-25 19:56:08,513 [wrapper] pandaids: 6896765510
[2025-11-25 11:56:09] 2025-11-25 19:56:08,703 [wrapper] cleanup supervisor_pilot 3995973 3995968
[2025-11-25 11:56:09] 2025-11-25 19:56:08,722 [wrapper] Test setup, not cleaning
[2025-11-25 11:56:09] 2025-11-25 19:56:08,744 [wrapper] apfmon messages muted
[2025-11-25 11:56:09] 2025-11-25 19:56:08,767 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:56:09] 2025-11-25 19:56:08,786 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:56:09]  *** Error codes and diagnostics ***
[2025-11-25 11:56:09]     "exeErrorCode": 65,
[2025-11-25 11:56:09]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 11:56:09]     "pilotErrorCode": 1305,
[2025-11-25 11:56:09]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 11:56:09]  *** Listing of results directory ***
[2025-11-25 11:56:09] total 404448
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc    576529 Nov 25 01:27 pilot3.tar.gz
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc      5112 Nov 25 01:31 queuedata.json
[2025-11-25 11:56:09] -rwx------. 1 boinc boinc     36292 Nov 25 01:31 runpilot2-wrapper.sh
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc       100 Nov 25 11:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:56:09] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 11:48 run_atlas
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc       105 Nov 25 11:48 job.xml
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc      6444 Nov 25 11:48 init_data.xml
[2025-11-25 11:56:09] -rw-r--r--. 2 boinc boinc 409919772 Nov 25 11:48 EVNT.47483658._004266.pool.root.1
[2025-11-25 11:56:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 11:48 start_atlas.sh
[2025-11-25 11:56:09] drwxrwx--x. 2 boinc boinc      4096 Nov 25 11:48 shared
[2025-11-25 11:56:09] -rw-r--r--. 2 boinc boinc    590105 Nov 25 11:48 input.tar.gz
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc         0 Nov 25 11:48 boinc_lockfile
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc      2784 Nov 25 11:48 pandaJob.out
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc    991893 Nov 25 11:48 agis_schedconf.cvmfs.json
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc   1516240 Nov 25 11:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:56:09] drwx------. 5 boinc boinc      4096 Nov 25 11:48 pilot3
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc       525 Nov 25 11:53 boinc_task_state.xml
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc       985 Nov 25 11:53 memory_monitor_summary.json
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc     50643 Nov 25 11:53 log.47556185._000296.job.log.tgz.1
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc     10331 Nov 25 11:55 heartbeat.json
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc        23 Nov 25 11:56 wrapper_checkpoint.txt
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc      8192 Nov 25 11:56 boinc_mmap_file
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc        95 Nov 25 11:56 pilot_heartbeat.json
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc       823 Nov 25 11:56 pilotlog.txt
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc    114063 Nov 25 11:56 log.47556185._000296.job.log.1
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc       186 Nov 25 11:56 output.list
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc       620 Nov 25 11:56 runtime_log
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc    184320 Nov 25 11:56 result.tar.gz
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc      8634 Nov 25 11:56 runtime_log.err
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc       645 Nov 25 11:56 AwRKDmGZ4h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOPJKDm54aEkm.diag
[2025-11-25 11:56:09] -rw-r--r--. 1 boinc boinc     22490 Nov 25 11:56 stderr.txt
[2025-11-25 11:56:09] No HITS result produced
[2025-11-25 11:56:09]  *** Contents of shared directory: ***
[2025-11-25 11:56:09] total 401092
[2025-11-25 11:56:09] -rw-r--r--. 2 boinc boinc 409919772 Nov 25 11:48 ATLAS.root_0
[2025-11-25 11:56:09] -rw-r--r--. 2 boinc boinc     15847 Nov 25 11:48 start_atlas.sh
[2025-11-25 11:56:09] -rw-r--r--. 2 boinc boinc    590105 Nov 25 11:48 input.tar.gz
[2025-11-25 11:56:09] -rw-------. 1 boinc boinc    184320 Nov 25 11:56 result.tar.gz
11:56:11 (3992201): run_atlas exited; CPU time 53.261801
11:56:11 (3992201): called boinc_finish(0)

</stderr_txt>
]]>

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