Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:27:27 (1203861): wrapper (7.7.26015): starting
20:27:27 (1203861): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 20:27:27] Arguments: --nthreads 3
[2025-11-25 20:27:27] Threads: 3
[2025-11-25 20:27:27] Checking for CVMFS
[2025-11-25 20:27:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:27:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:27:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:27:27] 2.9.2.0 411005 446 67700 153295 3 88 35298601 36864001 0 130560 0 2359268 99.998 19956 13557 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:27:27] CVMFS is ok
[2025-11-25 20:27:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:27:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:27:27] Further information can be found at the LHC@home message board.
[2025-11-25 20:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:27:27] Checking for apptainer binary...
[2025-11-25 20:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:27:27] Running /usr/bin/apptainer --version
[2025-11-25 20:27:27] apptainer version 1.4.1-1.1
[2025-11-25 20:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:27:27] thA335
[2025-11-25 20:27:27] apptainer works
[2025-11-25 20:27:27] Set ATHENA_PROC_NUMBER=3
[2025-11-25 20:27:27] Set ATHENA_CORE_NUMBER=3
[2025-11-25 20:27:27] Starting ATLAS job with PandaID=6896243491
[2025-11-25 20:27:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:31:43]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:31:43] 2025-11-25 19:30:50,528 | INFO     | cat /etc/os-release:
[2025-11-25 20:31:43] NAME="CentOS Linux"
[2025-11-25 20:31:43] VERSION="7 (Core)"
[2025-11-25 20:31:43] ID="centos"
[2025-11-25 20:31:43] ID_LIKE="rhel fedora"
[2025-11-25 20:31:43] VERSION_ID="7"
[2025-11-25 20:31:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:31:43] ANSI_COLOR="0;31"
[2025-11-25 20:31:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:31:43] HOME_URL="https://www.centos.org/"
[2025-11-25 20:31:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:31:43] 
[2025-11-25 20:31:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:31:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:31:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:31:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:31:43] 
[2025-11-25 20:31:43] 2025-11-25 19:30:50,528 | INFO     | ***************************************
[2025-11-25 20:31:43] 2025-11-25 19:30:51,031 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | INFO     | sufficient remaining disk space (826315636736 B)
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | INFO     | update_server=False
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | INFO     | aborting loop
[2025-11-25 20:31:43] 2025-11-25 19:30:51,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:31:43] 2025-11-25 19:30:51,200 | INFO     | all job control threads have been joined
[2025-11-25 20:31:43] 2025-11-25 19:30:51,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:31:43] 2025-11-25 19:30:52,009 | INFO     | all data control threads have been joined
[2025-11-25 20:31:43] 2025-11-25 19:30:52,051 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,052 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,052 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,206 | INFO     | [job] control thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,262 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,344 | INFO     | all payload control threads have been joined
[2025-11-25 20:31:43] 2025-11-25 19:30:52,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,887 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:52,946 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,011 | INFO     | [data] control thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,207 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,283 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,324 | INFO     | [job] validate thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,350 | INFO     | [payload] control thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,393 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:53,448 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:30:54,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:31:43] 2025-11-25 19:30:58,071 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:31:43] 2025-11-25 19:31:21,427 | INFO     | PID=1207582 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:31:43] 2025-11-25 19:31:21,427 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:31:43] 2025-11-25 19:31:21,427 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:31:43] 2025-11-25 19:31:21,427 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:31:43] 2025-11-25 19:31:36,603 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:31:43] 2025-11-25 19:31:37,777 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139882226964288)>', '<ExcThread(monitor, started 139881372182272)>']
[2025-11-25 20:31:43] 2025-11-25 19:31:38,514 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:31:43] 2025-11-25 19:31:38,514 | INFO     | [monitor] control thread has ended
[2025-11-25 20:31:43] 2025-11-25 19:31:42,803 | INFO     | all workflow threads have been joined
[2025-11-25 20:31:43] 2025-11-25 19:31:42,803 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:31:43] 2025-11-25 19:31:42,804 | INFO     | traces error code: 0
[2025-11-25 20:31:43] 2025-11-25 19:31:42,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:31:43] 2025-11-25 19:31:42,850 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:31:43] 2025-11-25 19:31:42,853 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:31:43] 2025-11-25 19:31:42,856 [wrapper] pilotpid: 1207582
[2025-11-25 20:31:43] 2025-11-25 19:31:42,858 [wrapper] Pilot exit status: 0
[2025-11-25 20:31:43] 2025-11-25 19:31:42,865 [wrapper] pandaids: 6896243491
[2025-11-25 20:31:43] 2025-11-25 19:31:42,881 [wrapper] cleanup supervisor_pilot 1207588 1207583
[2025-11-25 20:31:43] 2025-11-25 19:31:42,884 [wrapper] Test setup, not cleaning
[2025-11-25 20:31:43] 2025-11-25 19:31:42,886 [wrapper] apfmon messages muted
[2025-11-25 20:31:43] 2025-11-25 19:31:42,889 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:31:43] 2025-11-25 19:31:42,892 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:31:43]  *** Error codes and diagnostics ***
[2025-11-25 20:31:43]     "exeErrorCode": 65,
[2025-11-25 20:31:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:31:43]     "pilotErrorCode": 1305,
[2025-11-25 20:31:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:31:43]  *** Listing of results directory ***
[2025-11-25 20:31:43] total 404856
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc    576529 Nov 24 22:08 pilot3.tar.gz
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc      5112 Nov 24 22:56 queuedata.json
[2025-11-25 20:31:43] -rwx------ 1 boinc boinc     36292 Nov 24 22:58 runpilot2-wrapper.sh
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:31:43] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:27 run_atlas
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:27 job.xml
[2025-11-25 20:31:43] -rw-r--r-- 2 boinc boinc 410380940 Nov 25 20:27 EVNT.47483658._001426.pool.root.1
[2025-11-25 20:31:43] -rw-r--r-- 2 boinc boinc    590108 Nov 25 20:27 input.tar.gz
[2025-11-25 20:31:43] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:27 start_atlas.sh
[2025-11-25 20:31:43] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:27 shared
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:27 boinc_setup_complete
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc      6196 Nov 25 20:27 init_data.xml
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:27 boinc_lockfile
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc      2785 Nov 25 20:27 pandaJob.out
[2025-11-25 20:31:43] -rw------- 1 boinc boinc    991893 Nov 25 20:27 agis_schedconf.cvmfs.json
[2025-11-25 20:31:43] -rw------- 1 boinc boinc   1516240 Nov 25 20:27 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:31:43] drwx------ 5 boinc boinc      4096 Nov 25 20:27 pilot3
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc       522 Nov 25 20:28 boinc_task_state.xml
[2025-11-25 20:31:43] -rw------- 1 boinc boinc       946 Nov 25 20:28 memory_monitor_summary.json
[2025-11-25 20:31:43] -rw------- 1 boinc boinc     55599 Nov 25 20:28 log.47556149._004127.job.log.tgz.1
[2025-11-25 20:31:43] -rw------- 1 boinc boinc        95 Nov 25 20:30 pilot_heartbeat.json
[2025-11-25 20:31:43] -rw------- 1 boinc boinc      8382 Nov 25 20:30 heartbeat.json
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc      8192 Nov 25 20:31 boinc_mmap_file
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc        22 Nov 25 20:31 wrapper_checkpoint.txt
[2025-11-25 20:31:43] -rw------- 1 boinc boinc      4752 Nov 25 20:31 pilotlog.txt
[2025-11-25 20:31:43] -rw------- 1 boinc boinc     92114 Nov 25 20:31 log.47556149._004127.job.log.1
[2025-11-25 20:31:43] -rw------- 1 boinc boinc       186 Nov 25 20:31 output.list
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc       620 Nov 25 20:31 runtime_log
[2025-11-25 20:31:43] -rw------- 1 boinc boinc    163840 Nov 25 20:31 result.tar.gz
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc      8744 Nov 25 20:31 runtime_log.err
[2025-11-25 20:31:43] -rw------- 1 boinc boinc       649 Nov 25 20:31 GZXNDm7kth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlwLKDmHTyoBn.diag
[2025-11-25 20:31:43] -rw-r--r-- 1 boinc boinc      9161 Nov 25 20:31 stderr.txt
[2025-11-25 20:31:43] No HITS result produced
[2025-11-25 20:31:43]  *** Contents of shared directory: ***
[2025-11-25 20:31:43] total 401524
[2025-11-25 20:31:43] -rw-r--r-- 2 boinc boinc 410380940 Nov 25 20:27 ATLAS.root_0
[2025-11-25 20:31:43] -rw-r--r-- 2 boinc boinc    590108 Nov 25 20:27 input.tar.gz
[2025-11-25 20:31:43] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:27 start_atlas.sh
[2025-11-25 20:31:43] -rw------- 1 boinc boinc    163840 Nov 25 20:31 result.tar.gz
20:31:44 (1203861): run_atlas exited; CPU time 30.473462
20:31:44 (1203861): called boinc_finish(0)

</stderr_txt>
]]>

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