Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:31:18 (1628502): wrapper (7.7.26015): starting
19:31:18 (1628502): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 19:31:18] Arguments: --nthreads 8
[2025-11-25 19:31:18] Threads: 8
[2025-11-25 19:31:18] Checking for CVMFS
[2025-11-25 19:31:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:31:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:31:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:31:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:31:20] 2.13.3.0 11379 29333 340024 153303 3 521 26547126 32935936 29315 16776704 0 104497598 99.422 151092356 39414 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 19:31:20] CVMFS is ok
[2025-11-25 19:31:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:31:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:31:20] Further information can be found at the LHC@home message board.
[2025-11-25 19:31:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:31:20] Checking for apptainer binary...
[2025-11-25 19:31:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:31:20] Running /usr/bin/apptainer --version
[2025-11-25 19:31:20] apptainer version 1.4.4-1.el9
[2025-11-25 19:31:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:31:21] c6-4-5-1.aglt2.org
[2025-11-25 19:31:21] apptainer works
[2025-11-25 19:31:21] Set ATHENA_PROC_NUMBER=8
[2025-11-25 19:31:21] Set ATHENA_CORE_NUMBER=8
[2025-11-25 19:31:21] Starting ATLAS job with PandaID=6896243378
[2025-11-25 19:31:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:40:05 (1628502): BOINC client no longer exists - exiting
16:40:05 (1628502): timer handler: client dead, exiting
16:45:53 (3306068): wrapper (7.7.26015): starting
16:45:53 (3306068): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 16:45:53] Arguments: --nthreads 8
[2025-11-26 16:45:53] Threads: 8
[2025-11-26 16:45:53] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:45:54] Checking for CVMFS
[2025-11-26 16:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:45:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:45:54] 2.13.3.0 11379 30608 329344 153335 2 451 18584503 32935936 28735 16776704 0 113219724 99.439 158163117 39170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:45:54] CVMFS is ok
[2025-11-26 16:45:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:45:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:45:54] Further information can be found at the LHC@home message board.
[2025-11-26 16:45:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:45:54] Checking for apptainer binary...
[2025-11-26 16:45:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:45:54] Running /usr/bin/apptainer --version
[2025-11-26 16:45:54] apptainer version 1.4.4-1.el9
[2025-11-26 16:45:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:45:54] c6-4-5-1.aglt2.org
[2025-11-26 16:45:54] apptainer works
[2025-11-26 16:45:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 16:45:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 16:45:55] Starting ATLAS job with PandaID=6896243378
[2025-11-26 16:45:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:07:53]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:07:53] 2025-11-27 17:06:58,294 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:07:53] 2025-11-27 17:06:58,295 | INFO     | sum of square deviations: 460623549351.50916
[2025-11-27 12:07:53] 2025-11-27 17:06:58,371 | INFO     | sum of deviations: 2648652086503.541
[2025-11-27 12:07:53] 2025-11-27 17:06:58,371 | INFO     | mean x: 1764228361.6380367
[2025-11-27 12:07:53] 2025-11-27 17:06:58,371 | INFO     | mean y: 2955563.8124452233
[2025-11-27 12:07:53] 2025-11-27 17:06:58,371 | INFO     | intersect: -10141612897.135696
[2025-11-27 12:07:53] 2025-11-27 17:06:58,377 | INFO     | chi2: 6.742437806498415
[2025-11-27 12:07:53] 2025-11-27 17:06:58,378 | INFO     | sum of square deviations: 454595243553.035
[2025-11-27 12:07:53] 2025-11-27 17:06:58,450 | INFO     | sum of deviations: 3054684488877.328
[2025-11-27 12:07:53] 2025-11-27 17:06:58,450 | INFO     | mean x: 1764228209.1452465
[2025-11-27 12:07:53] 2025-11-27 17:06:58,450 | INFO     | mean y: 2965837.1434859154
[2025-11-27 12:07:53] 2025-11-27 17:06:58,450 | INFO     | intersect: -11851888831.363598
[2025-11-27 12:07:53] 2025-11-27 17:06:58,451 | INFO     | chi2: 3.401982423986795
[2025-11-27 12:07:53] 2025-11-27 17:06:58,451 | INFO     | current chi2=3.401982423986795 (change=49.543732969877205 %)
[2025-11-27 12:07:53] 2025-11-27 17:06:58,453 | INFO     | sum of square deviations: 448619775954.44006
[2025-11-27 12:07:53] 2025-11-27 17:06:58,573 | INFO     | monitor loop #4184: job 0:6896243378 is in state 'finished'
[2025-11-27 12:07:53] 2025-11-27 17:06:58,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:07:53] 2025-11-27 17:06:58,615 | INFO     | sum of deviations: 3260235052531.706
[2025-11-27 12:07:53] 2025-11-27 17:06:58,616 | INFO     | mean x: 1764228056.65252
[2025-11-27 12:07:53] 2025-11-27 17:06:58,616 | INFO     | mean y: 2971075.08576481
[2025-11-27 12:07:53] 2025-11-27 17:06:58,616 | INFO     | intersect: -12818127011.197811
[2025-11-27 12:07:53] 2025-11-27 17:06:58,617 | INFO     | chi2: 2.1447232143097836
[2025-11-27 12:07:53] 2025-11-27 17:06:58,644 | INFO     | current chi2=2.1447232143097836 (change=36.956663879633595 %)
[2025-11-27 12:07:53] 2025-11-27 17:06:58,646 | INFO     | sum of square deviations: 442696638402.49023
[2025-11-27 12:07:53] 2025-11-27 17:06:58,752 | INFO     | sum of deviations: 3247443389849.544
[2025-11-27 12:07:53] 2025-11-27 17:06:58,752 | INFO     | mean x: 1764227904.1563056
[2025-11-27 12:07:53] 2025-11-27 17:06:58,753 | INFO     | mean y: 2970744.275310835
[2025-11-27 12:07:53] 2025-11-27 17:06:58,753 | INFO     | intersect: -12938691216.87023
[2025-11-27 12:07:53] 2025-11-27 17:06:58,758 | INFO     | chi2: 2.1189250005179217
[2025-11-27 12:07:53] 2025-11-27 17:06:58,758 | INFO     | current chi2=2.1189250005179217 (change=1.2028691450595586 %)
[2025-11-27 12:07:53] 2025-11-27 17:06:58,758 | INFO     | right removable region: 1125
[2025-11-27 12:07:53] 2025-11-27 17:06:58,759 | INFO     | sum of square deviations: 454594311900.8977
[2025-11-27 12:07:53] 2025-11-27 17:06:58,896 | INFO     | sum of deviations: 2370829189178.3916
[2025-11-27 12:07:53] 2025-11-27 17:06:58,896 | INFO     | mean x: 1764228514.1426055
[2025-11-27 12:07:53] 2025-11-27 17:06:58,896 | INFO     | mean y: 2962581.8617957747
[2025-11-27 12:07:53] 2025-11-27 17:06:58,896 | INFO     | intersect: -9197954253.67913
[2025-11-27 12:07:53] 2025-11-27 17:06:58,897 | INFO     | chi2: 4.986424323422332
[2025-11-27 12:07:53] 2025-11-27 17:06:58,898 | INFO     | current chi2=4.986424323422332 (change=26.044192523120103 %)
[2025-11-27 12:07:53] 2025-11-27 17:06:58,940 | INFO     | sum of square deviations: 448617982074.53235
[2025-11-27 12:07:53] 2025-11-27 17:06:59,001 | INFO     | sum of deviations: 2271102322607.2593
[2025-11-27 12:07:53] 2025-11-27 17:06:59,001 | INFO     | mean x: 1764228666.6463306
[2025-11-27 12:07:53] 2025-11-27 17:06:59,001 | INFO     | mean y: 2965126.243147657
[2025-11-27 12:07:53] 2025-11-27 17:06:59,001 | INFO     | intersect: -8928339419.113035
[2025-11-27 12:07:53] 2025-11-27 17:06:59,003 | INFO     | chi2: 4.894939265462417
[2025-11-27 12:07:53] 2025-11-27 17:06:59,003 | INFO     | current chi2=4.894939265462417 (change=1.8346825706386287 %)
[2025-11-27 12:07:53] 2025-11-27 17:06:59,003 | INFO     | left removable region: 20
[2025-11-27 12:07:53] 2025-11-27 17:06:59,004 | INFO     | sum of square deviations: 418386704841.4438
[2025-11-27 12:07:53] 2025-11-27 17:06:59,026 | INFO     | sum of deviations: 2718236211796.855
[2025-11-27 12:07:53] 2025-11-27 17:06:59,026 | INFO     | mean x: 1764228483.6669683
[2025-11-27 12:07:53] 2025-11-27 17:06:59,026 | INFO     | mean y: 2984301.4398190044
[2025-11-27 12:07:53] 2025-11-27 17:06:59,026 | INFO     | intersect: -11459114504.984722
[2025-11-27 12:07:53] 2025-11-27 17:06:59,028 | INFO     | chi2: 0.19972381827685085
[2025-11-27 12:07:53] 2025-11-27 17:06:59,028 | INFO     | current memory leak: 6.50 B/s (using 1105 data points, chi2=0.20)
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | could have reported an average CPU frequency of 3019 MHz (41 samples)
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | ..............................
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | . Timing measurements:
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | . get job = 0 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | . initial setup = 2 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | . payload setup = 5 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,029 | INFO     | . stage-in = 0 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,030 | INFO     | . payload execution = 69600 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,030 | INFO     | . stage-out = 6 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,030 | INFO     | . log creation = 1 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,030 | INFO     | ..............................
[2025-11-27 12:07:53] 2025-11-27 17:06:59,115 | INFO     | 
[2025-11-27 12:07:53] 2025-11-27 17:06:59,115 | INFO     | job summary report
[2025-11-27 12:07:53] 2025-11-27 17:06:59,115 | INFO     | --------------------------------------------------
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | PanDA job id: 6896243378
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | task id: 47556149
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | errors: (none)
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | pilot state: finished 
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | transexitcode: 0
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | exeerrorcode: 0
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | exeerrordiag: 
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | exitcode: 0
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | exitmsg: OK
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | cpuconsumptiontime: 241493 s
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | nevents: 1000
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | neventsw: 0
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | pid: 3365347
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | pgrp: 3365347
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | corecount: 8
[2025-11-27 12:07:53] 2025-11-27 17:06:59,116 | INFO     | event service: False
[2025-11-27 12:07:53] 2025-11-27 17:06:59,117 | INFO     | sizes: {0: 2284314, 4: 2284576, 11: 2284604, 69609: 2341190, 69610: 2341189, 69617: 2350423, 69640: 2350709}
[2025-11-27 12:07:53] 2025-11-27 17:06:59,117 | INFO     | --------------------------------------------------
[2025-11-27 12:07:53] 2025-11-27 17:06:59,117 | INFO     | 
[2025-11-27 12:07:53] 2025-11-27 17:06:59,117 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 12:07:53] 2025-11-27 17:06:59,209 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,209 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,210 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | job 6896243378 has completed (purged errors)
[2025-11-27 12:07:53] 2025-11-27 17:06:59,211 | INFO     | overall cleanup function is called
[2025-11-27 12:07:53] 2025-11-27 17:07:00,276 | INFO     | --- collectZombieJob: --- 10, [3365347]
[2025-11-27 12:07:53] 2025-11-27 17:07:00,277 | INFO     | zombie collector waiting for pid 3365347
[2025-11-27 12:07:53] 2025-11-27 17:07:00,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:07:53] 2025-11-27 17:07:00,277 | INFO     | collected zombie processes
[2025-11-27 12:07:53] 2025-11-27 17:07:00,277 | INFO     | will attempt to kill all subprocesses of pid=3365347
[2025-11-27 12:07:53] 2025-11-27 17:07:01,257 | INFO     | process IDs to be killed: [3365347] (in reverse order)
[2025-11-27 12:07:53] 2025-11-27 17:07:01,611 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:07:53] 2025-11-27 17:07:01,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:07:53] 2025-11-27 17:07:01,715 | INFO     | did not find any defunct processes belonging to 3365347
[2025-11-27 12:07:53] 2025-11-27 17:07:01,759 | INFO     | did not find any defunct processes belonging to 3365347
[2025-11-27 12:07:53] 2025-11-27 17:07:01,760 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:07:53] 2025-11-27 17:07:01,760 | INFO     | ready for new job
[2025-11-27 12:07:53] 2025-11-27 17:07:01,761 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:07:53] 2025-11-27 17:07:01,767 | INFO     | ***************************************
[2025-11-27 12:07:53] 2025-11-27 17:07:01,767 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:07:53] 2025-11-27 17:07:01,767 | INFO     | ***************************************
[2025-11-27 12:07:53] 2025-11-27 17:07:01,767 | INFO     | 
[2025-11-27 12:07:53] 2025-11-27 17:07:01,770 | INFO     | architecture information:
[2025-11-27 12:07:53] 2025-11-27 17:07:01,771 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:07:53] 2025-11-27 17:07:01,787 | INFO     | cat /etc/os-release:
[2025-11-27 12:07:53] NAME="CentOS Linux"
[2025-11-27 12:07:53] VERSION="7 (Core)"
[2025-11-27 12:07:53] ID="centos"
[2025-11-27 12:07:53] ID_LIKE="rhel fedora"
[2025-11-27 12:07:53] VERSION_ID="7"
[2025-11-27 12:07:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:07:53] ANSI_COLOR="0;31"
[2025-11-27 12:07:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:07:53] HOME_URL="https://www.centos.org/"
[2025-11-27 12:07:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:07:53] 
[2025-11-27 12:07:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:07:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:07:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:07:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:07:53] 
[2025-11-27 12:07:53] 2025-11-27 17:07:01,788 | INFO     | ***************************************
[2025-11-27 12:07:53] 2025-11-27 17:07:02,291 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 12:07:53] 2025-11-27 17:07:02,371 | INFO     | sufficient remaining disk space (69124227072 B)
[2025-11-27 12:07:53] 2025-11-27 17:07:02,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:07:53] 2025-11-27 17:07:02,372 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:07:53] 2025-11-27 17:07:02,372 | INFO     | update_server=False
[2025-11-27 12:07:53] 2025-11-27 17:07:02,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:07:53] 2025-11-27 17:07:02,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:07:53] 2025-11-27 17:07:02,372 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:07:53] 2025-11-27 17:07:02,372 | INFO     | aborting loop
[2025-11-27 12:07:53] 2025-11-27 17:07:02,770 | INFO     | all job control threads have been joined
[2025-11-27 12:07:53] 2025-11-27 17:07:02,823 | INFO     | all data control threads have been joined
[2025-11-27 12:07:53] 2025-11-27 17:07:02,987 | INFO     | all payload control threads have been joined
[2025-11-27 12:07:53] 2025-11-27 17:07:03,400 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,403 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,422 | INFO     | [job] validate thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,428 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,685 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,776 | INFO     | [job] control thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,803 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,829 | INFO     | [data] control thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:03,993 | INFO     | [payload] control thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:04,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:07:53] 2025-11-27 17:07:04,179 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:04,280 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:04,291 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:04,361 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:04,405 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:04,902 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:07:53] 2025-11-27 17:07:05,145 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:08,936 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:07:53] 2025-11-27 17:07:09,739 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:07:53] 2025-11-27 17:07:10,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951336073024)>', '<ExcThread(monitor, started 139951054227200)>']
[2025-11-27 12:07:53] 2025-11-27 17:07:15,451 | INFO     | all workflow threads have been joined
[2025-11-27 12:07:53] 2025-11-27 17:07:15,453 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:07:53] 2025-11-27 17:07:15,454 | INFO     | traces error code: 0
[2025-11-27 12:07:53] 2025-11-27 17:07:15,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:07:53] 2025-11-27 17:07:32,227 | INFO     | PID=3324588 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:07:53] 2025-11-27 17:07:32,227 | INFO     | .. there are 46 such processes running
[2025-11-27 12:07:53] 2025-11-27 17:07:32,229 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:07:53] 2025-11-27 17:07:32,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:07:53] 2025-11-27 17:07:32,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:07:53] 2025-11-27 17:07:32,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:07:53] 2025-11-27 17:07:32,229 | INFO     | [monitor] control thread has ended
[2025-11-27 12:07:53] 2025-11-27 17:07:32,583 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:07:53] 2025-11-27 17:07:32,639 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:07:53] 2025-11-27 17:07:32,674 [wrapper] pilotpid: 3324588
[2025-11-27 12:07:53] 2025-11-27 17:07:32,737 [wrapper] Pilot exit status: 0
[2025-11-27 12:07:53] 2025-11-27 17:07:32,878 [wrapper] pandaids: 6896243378 6896243378
[2025-11-27 12:07:53] 2025-11-27 17:07:33,250 [wrapper] cleanup supervisor_pilot   92261 3324591
[2025-11-27 12:07:53] 2025-11-27 17:07:33,255 [wrapper] Test setup, not cleaning
[2025-11-27 12:07:53] 2025-11-27 17:07:33,258 [wrapper] apfmon messages muted
[2025-11-27 12:07:53] 2025-11-27 17:07:33,261 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:07:53] 2025-11-27 17:07:33,264 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:07:53]  *** Error codes and diagnostics ***
[2025-11-27 12:07:53]     "exeErrorCode": 0,
[2025-11-27 12:07:53]     "exeErrorDiag": "",
[2025-11-27 12:07:53]     "pilotErrorCode": 0,
[2025-11-27 12:07:53]     "pilotErrorDiag": "",
[2025-11-27 12:07:53]  *** Listing of results directory ***
[2025-11-27 12:07:53] total 1736352
[2025-11-27 12:07:53] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 16:08 pilot3.tar.gz
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 16:46 queuedata.json
[2025-11-27 12:07:53] -rwx------. 1 boincer umatlas     36292 Nov 24 16:46 runpilot2-wrapper.sh
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas       100 Nov 25 19:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:07:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 19:31 run_atlas
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas       105 Nov 25 19:31 job.xml
[2025-11-27 12:07:53] -rw-r--r--. 3 boincer umatlas 410184991 Nov 25 19:31 EVNT.47483658._001420.pool.root.1
[2025-11-27 12:07:53] -rw-r--r--. 3 boincer umatlas 410184991 Nov 25 19:31 ATLAS.root_0
[2025-11-27 12:07:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:31 start_atlas.sh
[2025-11-27 12:07:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 19:31 shared
[2025-11-27 12:07:53] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 19:31 input.tar.gz
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas         0 Nov 25 19:31 boinc_lockfile
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 16:45 pandaJob.out
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas        57 Nov 26 16:45 setup.sh.local
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas    991538 Nov 26 16:46 agis_schedconf.cvmfs.json
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas       534 Nov 27 11:53 boinc_task_state.xml
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas      6878 Nov 27 12:03 init_data.xml
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas 931709783 Nov 27 12:05 HITS.47556149._004067.pool.root.1
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas      1068 Nov 27 12:06 memory_monitor_summary.json
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas   2223665 Nov 27 12:06 log.47556149._004067.job.log.tgz.1
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas      8633 Nov 27 12:06 heartbeat.json
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas        96 Nov 27 12:07 pilot_heartbeat.json
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas       823 Nov 27 12:07 pilotlog.txt
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas   8789559 Nov 27 12:07 log.47556149._004067.job.log.1
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas       353 Nov 27 12:07 output.list
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:07 runtime_log
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas  11028480 Nov 27 12:07 result.tar.gz
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas      9428 Nov 27 12:07 runtime_log.err
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas       789 Nov 27 12:07 pIaMDmmZth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIwLKDmwwp5Ln.diag
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas        30 Nov 27 12:07 wrapper_checkpoint.txt
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:07 boinc_mmap_file
[2025-11-27 12:07:53] -rw-r--r--. 1 boincer umatlas     23458 Nov 27 12:07 stderr.txt
[2025-11-27 12:07:53] HITS file was successfully produced:
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas 931709783 Nov 27 12:05 shared/HITS.pool.root.1
[2025-11-27 12:07:53]  *** Contents of shared directory: ***
[2025-11-27 12:07:53] total 1321824
[2025-11-27 12:07:53] -rw-r--r--. 3 boincer umatlas 410184991 Nov 25 19:31 ATLAS.root_0
[2025-11-27 12:07:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 19:31 start_atlas.sh
[2025-11-27 12:07:53] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 19:31 input.tar.gz
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas 931709783 Nov 27 12:05 HITS.pool.root.1
[2025-11-27 12:07:53] -rw-------. 1 boincer umatlas  11028480 Nov 27 12:07 result.tar.gz
12:07:55 (3306068): run_atlas exited; CPU time 243768.857232
12:07:55 (3306068): called boinc_finish(0)

</stderr_txt>
]]>

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