Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:23:08 (1183043): wrapper (7.7.26015): starting
20:23:08 (1183043): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 20:23:08] Arguments: --nthreads 3
[2025-11-25 20:23:08] Threads: 3
[2025-11-25 20:23:08] Checking for CVMFS
[2025-11-25 20:23:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:23:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:23:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:23:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:23:09] 2.9.2.0 411005 442 67732 153295 3 88 35296403 36864001 0 130560 0 2296663 99.998 19955 13584 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:23:09] CVMFS is ok
[2025-11-25 20:23:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:23:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:23:09] Further information can be found at the LHC@home message board.
[2025-11-25 20:23:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:23:09] Checking for apptainer binary...
[2025-11-25 20:23:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:23:09] Running /usr/bin/apptainer --version
[2025-11-25 20:23:09] apptainer version 1.4.1-1.1
[2025-11-25 20:23:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:23:09] thA335
[2025-11-25 20:23:09] apptainer works
[2025-11-25 20:23:09] Set ATHENA_PROC_NUMBER=3
[2025-11-25 20:23:09] Set ATHENA_CORE_NUMBER=3
[2025-11-25 20:23:09] Starting ATLAS job with PandaID=6896243448
[2025-11-25 20:23:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:27:23]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:27:23] 2025-11-25 19:26:35,337 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:27:23] 2025-11-25 19:26:35,337 | INFO     | update_server=False
[2025-11-25 20:27:23] 2025-11-25 19:26:35,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:27:23] 2025-11-25 19:26:35,337 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:27:23] 2025-11-25 19:26:35,337 | INFO     | aborting loop
[2025-11-25 20:27:23] 2025-11-25 19:26:35,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:27:23] 2025-11-25 19:26:35,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:27:23] 2025-11-25 19:26:35,831 | INFO     | all job control threads have been joined
[2025-11-25 20:27:23] 2025-11-25 19:26:35,951 | INFO     | all data control threads have been joined
[2025-11-25 20:27:23] 2025-11-25 19:26:36,338 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:36,342 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:36,343 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:36,382 | INFO     | all payload control threads have been joined
[2025-11-25 20:27:23] 2025-11-25 19:26:36,475 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:36,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:36,837 | INFO     | [job] control thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:36,957 | INFO     | [data] control thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,184 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,258 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,325 | INFO     | [job] validate thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,388 | INFO     | [payload] control thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,415 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,466 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,708 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:37,876 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:26:38,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:27:23] 2025-11-25 19:26:42,015 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:27:23] 2025-11-25 19:27:04,939 | INFO     | PID=1186771 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:27:23] 2025-11-25 19:27:04,939 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:27:23] 2025-11-25 19:27:04,939 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:27:23] 2025-11-25 19:27:04,939 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:27:23] 2025-11-25 19:27:16,111 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:27:23] 2025-11-25 19:27:17,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614996154176)>', '<ExcThread(monitor, started 140614511343360)>']
[2025-11-25 20:27:23] 2025-11-25 19:27:18,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:27:23] 2025-11-25 19:27:18,009 | INFO     | [monitor] control thread has ended
[2025-11-25 20:27:23] 2025-11-25 19:27:22,895 | INFO     | all workflow threads have been joined
[2025-11-25 20:27:23] 2025-11-25 19:27:22,895 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:27:23] 2025-11-25 19:27:22,896 | INFO     | traces error code: 0
[2025-11-25 20:27:23] 2025-11-25 19:27:22,896 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:27:23] 2025-11-25 19:27:22,959 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:27:23] 2025-11-25 19:27:22,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:27:23] 2025-11-25 19:27:22,967 [wrapper] pilotpid: 1186771
[2025-11-25 20:27:23] 2025-11-25 19:27:22,970 [wrapper] Pilot exit status: 0
[2025-11-25 20:27:23] 2025-11-25 19:27:22,987 [wrapper] pandaids: 6896243448
[2025-11-25 20:27:23] 2025-11-25 19:27:23,003 [wrapper] cleanup supervisor_pilot 1186777 1186772
[2025-11-25 20:27:23] 2025-11-25 19:27:23,006 [wrapper] Test setup, not cleaning
[2025-11-25 20:27:23] 2025-11-25 19:27:23,008 [wrapper] apfmon messages muted
[2025-11-25 20:27:23] 2025-11-25 19:27:23,010 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:27:23] 2025-11-25 19:27:23,012 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:27:23]  *** Error codes and diagnostics ***
[2025-11-25 20:27:23]     "exeErrorCode": 65,
[2025-11-25 20:27:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:27:23]     "pilotErrorCode": 1305,
[2025-11-25 20:27:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:27:23]  *** Listing of results directory ***
[2025-11-25 20:27:23] total 402996
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc    576529 Nov 24 22:08 pilot3.tar.gz
[2025-11-25 20:27:23] -rwx------ 1 boinc boinc     36292 Nov 24 22:51 runpilot2-wrapper.sh
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc      5112 Nov 24 22:51 queuedata.json
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:27:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:23 run_atlas
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:23 job.xml
[2025-11-25 20:27:23] -rw-r--r-- 2 boinc boinc 408468477 Nov 25 20:23 EVNT.47483658._001422.pool.root.1
[2025-11-25 20:27:23] -rw-r--r-- 2 boinc boinc    590100 Nov 25 20:23 input.tar.gz
[2025-11-25 20:27:23] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:23 start_atlas.sh
[2025-11-25 20:27:23] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:23 shared
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:23 boinc_setup_complete
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc      6196 Nov 25 20:23 init_data.xml
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:23 boinc_lockfile
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc      2786 Nov 25 20:23 pandaJob.out
[2025-11-25 20:27:23] -rw------- 1 boinc boinc    991893 Nov 25 20:23 agis_schedconf.cvmfs.json
[2025-11-25 20:27:23] -rw------- 1 boinc boinc   1516240 Nov 25 20:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:27:23] drwx------ 5 boinc boinc      4096 Nov 25 20:23 pilot3
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc       524 Nov 25 20:24 boinc_task_state.xml
[2025-11-25 20:27:23] -rw------- 1 boinc boinc       958 Nov 25 20:24 memory_monitor_summary.json
[2025-11-25 20:27:23] -rw------- 1 boinc boinc     55746 Nov 25 20:24 log.47556149._004084.job.log.tgz.1
[2025-11-25 20:27:23] -rw------- 1 boinc boinc        95 Nov 25 20:26 pilot_heartbeat.json
[2025-11-25 20:27:23] -rw------- 1 boinc boinc      8404 Nov 25 20:26 heartbeat.json
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc      8192 Nov 25 20:27 boinc_mmap_file
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc        23 Nov 25 20:27 wrapper_checkpoint.txt
[2025-11-25 20:27:23] -rw------- 1 boinc boinc      4752 Nov 25 20:27 pilotlog.txt
[2025-11-25 20:27:23] -rw------- 1 boinc boinc     93753 Nov 25 20:27 log.47556149._004084.job.log.1
[2025-11-25 20:27:23] -rw------- 1 boinc boinc       186 Nov 25 20:27 output.list
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc       620 Nov 25 20:27 runtime_log
[2025-11-25 20:27:23] -rw------- 1 boinc boinc    174080 Nov 25 20:27 result.tar.gz
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc      8744 Nov 25 20:27 runtime_log.err
[2025-11-25 20:27:23] -rw------- 1 boinc boinc       649 Nov 25 20:27 2dNLDmmdth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYwLKDmfAN3zm.diag
[2025-11-25 20:27:23] -rw-r--r-- 1 boinc boinc      7892 Nov 25 20:27 stderr.txt
[2025-11-25 20:27:23] No HITS result produced
[2025-11-25 20:27:23]  *** Contents of shared directory: ***
[2025-11-25 20:27:23] total 399668
[2025-11-25 20:27:23] -rw-r--r-- 2 boinc boinc 408468477 Nov 25 20:23 ATLAS.root_0
[2025-11-25 20:27:23] -rw-r--r-- 2 boinc boinc    590100 Nov 25 20:23 input.tar.gz
[2025-11-25 20:27:23] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:23 start_atlas.sh
[2025-11-25 20:27:23] -rw------- 1 boinc boinc    174080 Nov 25 20:27 result.tar.gz
20:27:24 (1183043): run_atlas exited; CPU time 31.321037
20:27:24 (1183043): called boinc_finish(0)

</stderr_txt>
]]>

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