Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:03:08 (3177793): wrapper (7.7.26015): starting
16:03:08 (3177793): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:03:08] Arguments: --nthreads 8
[2025-11-25 16:03:08] Threads: 8
[2025-11-25 16:03:08] Checking for CVMFS
[2025-11-25 16:03:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:03:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:03:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:03:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:03:10] 2.13.3.0 11250 29125 341544 153297 0 313 24773066 32935937 15613 16776704 0 94177956 99.478 126858819 39768 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:03:10] CVMFS is ok
[2025-11-25 16:03:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:03:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:03:10] Further information can be found at the LHC@home message board.
[2025-11-25 16:03:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:03:10] Checking for apptainer binary...
[2025-11-25 16:03:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:03:10] Running /usr/bin/apptainer --version
[2025-11-25 16:03:12] apptainer version 1.4.4-1.el9
[2025-11-25 16:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:03:12] c6-2-29-1.aglt2.org
[2025-11-25 16:03:12] apptainer works
[2025-11-25 16:03:12] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:03:12] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:03:13] Starting ATLAS job with PandaID=6896243361
[2025-11-25 16:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:04:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:04:42] 2025-11-26 13:03:56,396 | INFO     | monitor loop #3676: job 0:6896243361 is in state 'finished'
[2025-11-26 08:04:42] 2025-11-26 13:03:56,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:04:42] 2025-11-26 13:03:57,086 | INFO     | time since job start (57615s) is within the limit (172800.0s)
[2025-11-26 08:04:42] 2025-11-26 13:03:58,901 | INFO     | monitor loop #3677: job 0:6896243361 is in state 'finished'
[2025-11-26 08:04:42] 2025-11-26 13:03:58,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:04:42] 2025-11-26 13:03:59,094 | INFO     | time since job start (57617s) is within the limit (172800.0s)
[2025-11-26 08:04:42] 2025-11-26 13:04:01,102 | INFO     | time since job start (57619s) is within the limit (172800.0s)
[2025-11-26 08:04:42] 2025-11-26 13:04:01,407 | INFO     | monitor loop #3678: job 0:6896243361 is in state 'finished'
[2025-11-26 08:04:42] 2025-11-26 13:04:01,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:04:42] 2025-11-26 13:04:03,112 | INFO     | time since job start (57621s) is within the limit (172800.0s)
[2025-11-26 08:04:42] 2025-11-26 13:04:03,912 | INFO     | monitor loop #3679: job 0:6896243361 is in state 'finished'
[2025-11-26 08:04:42] 2025-11-26 13:04:03,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:04:42] 2025-11-26 13:04:05,120 | INFO     | time since job start (57623s) is within the limit (172800.0s)
[2025-11-26 08:04:42] 2025-11-26 13:04:06,417 | INFO     | monitor loop #3680: job 0:6896243361 is in state 'finished'
[2025-11-26 08:04:42] 2025-11-26 13:04:06,417 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:04:42] 2025-11-26 13:04:06,952 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:04:42] 2025-11-26 13:04:06,955 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2901.5301785714296
[2025-11-26 08:04:42] 2025-11-26 13:04:06,977 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896243361/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:04:42] 2025-11-26 13:04:06,978 | INFO     | extracted standard info from prmon json
[2025-11-26 08:04:42] 2025-11-26 13:04:06,978 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:04:42] 2025-11-26 13:04:06,978 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:04:42] 2025-11-26 13:04:07,007 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:04:42] 2025-11-26 13:04:07,009 | INFO     | sum of square deviations: 260070699655.38907
[2025-11-26 08:04:42] 2025-11-26 13:04:07,040 | INFO     | sum of deviations: 1593672312748.3945
[2025-11-26 08:04:42] 2025-11-26 13:04:07,040 | INFO     | mean x: 1764133477.0254507
[2025-11-26 08:04:42] 2025-11-26 13:04:07,040 | INFO     | mean y: 2940315.0668080593
[2025-11-26 08:04:42] 2025-11-26 13:04:07,040 | INFO     | intersect: -10807391960.169792
[2025-11-26 08:04:42] 2025-11-26 13:04:07,041 | INFO     | chi2: 13.098819817932695
[2025-11-26 08:04:42] 2025-11-26 13:04:07,047 | INFO     | sum of square deviations: 255957804040.14532
[2025-11-26 08:04:42] 2025-11-26 13:04:07,077 | INFO     | sum of deviations: 1911445518944.929
[2025-11-26 08:04:42] 2025-11-26 13:04:07,078 | INFO     | mean x: 1764133324.5501065
[2025-11-26 08:04:42] 2025-11-26 13:04:07,078 | INFO     | mean y: 2952093.224946695
[2025-11-26 08:04:42] 2025-11-26 13:04:07,078 | INFO     | intersect: -13171269144.834423
[2025-11-26 08:04:42] 2025-11-26 13:04:07,083 | INFO     | chi2: 9.91169904558911
[2025-11-26 08:04:42] 2025-11-26 13:04:07,083 | INFO     | current chi2=9.91169904558911 (change=24.33135821885508 %)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,083 | INFO     | right removable region: 937
[2025-11-26 08:04:42] 2025-11-26 13:04:07,084 | INFO     | sum of square deviations: 255955085566.044
[2025-11-26 08:04:42] 2025-11-26 13:04:07,115 | INFO     | sum of deviations: 1260574495142.0085
[2025-11-26 08:04:42] 2025-11-26 13:04:07,115 | INFO     | mean x: 1764133629.5511727
[2025-11-26 08:04:42] 2025-11-26 13:04:07,116 | INFO     | mean y: 2952654.8123667375
[2025-11-26 08:04:42] 2025-11-26 13:04:07,116 | INFO     | intersect: -8685375824.836836
[2025-11-26 08:04:42] 2025-11-26 13:04:07,117 | INFO     | chi2: 10.081304649771148
[2025-11-26 08:04:42] 2025-11-26 13:04:07,117 | INFO     | current chi2=10.081304649771148 (change=23.0365423000206 %)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,117 | INFO     | left removable region: 10
[2025-11-26 08:04:42] 2025-11-26 13:04:07,118 | INFO     | sum of square deviations: 247057492450.05795
[2025-11-26 08:04:42] 2025-11-26 13:04:07,131 | INFO     | time since job start (57625s) is within the limit (172800.0s)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,149 | INFO     | sum of deviations: 1485235714440.1462
[2025-11-26 08:04:42] 2025-11-26 13:04:07,149 | INFO     | mean x: 1764133599.10356
[2025-11-26 08:04:42] 2025-11-26 13:04:07,149 | INFO     | mean y: 2973392.258899676
[2025-11-26 08:04:42] 2025-11-26 13:04:07,149 | INFO     | intersect: -10602469901.318201
[2025-11-26 08:04:42] 2025-11-26 13:04:07,150 | INFO     | chi2: 5.38967163860259
[2025-11-26 08:04:42] 2025-11-26 13:04:07,151 | INFO     | current memory leak: 6.01 B/s (using 927 data points, chi2=5.39)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | could have reported an average CPU frequency of 2916 MHz (35 samples)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | ..............................
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . Timing measurements:
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . get job = 0 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . initial setup = 4 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . payload setup = 33 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . stage-in = 0 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . payload execution = 57489 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . stage-out = 7 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | . log creation = 1 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,156 | INFO     | ..............................
[2025-11-26 08:04:42] 2025-11-26 13:04:07,541 | INFO     | 
[2025-11-26 08:04:42] 2025-11-26 13:04:07,541 | INFO     | job summary report
[2025-11-26 08:04:42] 2025-11-26 13:04:07,541 | INFO     | --------------------------------------------------
[2025-11-26 08:04:42] 2025-11-26 13:04:07,541 | INFO     | PanDA job id: 6896243361
[2025-11-26 08:04:42] 2025-11-26 13:04:07,541 | INFO     | task id: 47556149
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | errors: (none)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | pilot state: finished 
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | transexitcode: 0
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | exeerrorcode: 0
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | exeerrordiag: 
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | exitcode: 0
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | exitmsg: OK
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | cpuconsumptiontime: 235564 s
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | nevents: 1000
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | neventsw: 0
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | pid: 3190581
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | pgrp: 3190581
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | corecount: 8
[2025-11-26 08:04:42] 2025-11-26 13:04:07,542 | INFO     | event service: False
[2025-11-26 08:04:42] 2025-11-26 13:04:07,543 | INFO     | sizes: {0: 2284143, 1: 2284342, 12: 2284342, 23: 2284370, 25: 2284660, 34: 2284688, 57528: 2337183, 57529: 2337182, 57536: 2346288, 57565: 2346478}
[2025-11-26 08:04:42] 2025-11-26 13:04:07,543 | INFO     | --------------------------------------------------
[2025-11-26 08:04:42] 2025-11-26 13:04:07,543 | INFO     | 
[2025-11-26 08:04:42] 2025-11-26 13:04:07,543 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 08:04:42] 2025-11-26 13:04:07,660 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | job 6896243361 has completed (purged errors)
[2025-11-26 08:04:42] 2025-11-26 13:04:07,662 | INFO     | overall cleanup function is called
[2025-11-26 08:04:42] 2025-11-26 13:04:08,730 | INFO     | --- collectZombieJob: --- 10, [3190581]
[2025-11-26 08:04:42] 2025-11-26 13:04:08,730 | INFO     | zombie collector waiting for pid 3190581
[2025-11-26 08:04:42] 2025-11-26 13:04:08,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:04:42] 2025-11-26 13:04:08,731 | INFO     | collected zombie processes
[2025-11-26 08:04:42] 2025-11-26 13:04:08,731 | INFO     | will attempt to kill all subprocesses of pid=3190581
[2025-11-26 08:04:42] 2025-11-26 13:04:09,545 | INFO     | process IDs to be killed: [3190581] (in reverse order)
[2025-11-26 08:04:42] 2025-11-26 13:04:09,841 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:04:42] 2025-11-26 13:04:09,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:04:42] 2025-11-26 13:04:09,855 | INFO     | did not find any defunct processes belonging to 3190581
[2025-11-26 08:04:42] 2025-11-26 13:04:09,867 | INFO     | did not find any defunct processes belonging to 3190581
[2025-11-26 08:04:42] 2025-11-26 13:04:09,868 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:04:42] 2025-11-26 13:04:09,868 | INFO     | ready for new job
[2025-11-26 08:04:42] 2025-11-26 13:04:09,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:04:42] 2025-11-26 13:04:09,873 | INFO     | ***************************************
[2025-11-26 08:04:42] 2025-11-26 13:04:09,873 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:04:42] 2025-11-26 13:04:09,873 | INFO     | ***************************************
[2025-11-26 08:04:42] 2025-11-26 13:04:09,873 | INFO     | 
[2025-11-26 08:04:42] 2025-11-26 13:04:09,876 | INFO     | architecture information:
[2025-11-26 08:04:42] 2025-11-26 13:04:09,876 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:04:42] 2025-11-26 13:04:09,935 | INFO     | cat /etc/os-release:
[2025-11-26 08:04:42] NAME="CentOS Linux"
[2025-11-26 08:04:42] VERSION="7 (Core)"
[2025-11-26 08:04:42] ID="centos"
[2025-11-26 08:04:42] ID_LIKE="rhel fedora"
[2025-11-26 08:04:42] VERSION_ID="7"
[2025-11-26 08:04:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:04:42] ANSI_COLOR="0;31"
[2025-11-26 08:04:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:04:42] HOME_URL="https://www.centos.org/"
[2025-11-26 08:04:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:04:42] 
[2025-11-26 08:04:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:04:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:04:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:04:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:04:42] 
[2025-11-26 08:04:42] 2025-11-26 13:04:09,936 | INFO     | ***************************************
[2025-11-26 08:04:42] 2025-11-26 13:04:10,439 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 08:04:42] 2025-11-26 13:04:10,476 | INFO     | sufficient remaining disk space (68574773248 B)
[2025-11-26 08:04:42] 2025-11-26 13:04:10,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:04:42] 2025-11-26 13:04:10,477 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:04:42] 2025-11-26 13:04:10,477 | INFO     | update_server=False
[2025-11-26 08:04:42] 2025-11-26 13:04:10,477 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:04:42] 2025-11-26 13:04:10,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:04:42] 2025-11-26 13:04:10,477 | INFO     | aborting loop
[2025-11-26 08:04:42] 2025-11-26 13:04:11,058 | INFO     | all job control threads have been joined
[2025-11-26 08:04:42] 2025-11-26 13:04:11,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:04:42] 2025-11-26 13:04:11,331 | INFO     | all payload control threads have been joined
[2025-11-26 08:04:42] 2025-11-26 13:04:11,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:04:42] 2025-11-26 13:04:11,425 | INFO     | all data control threads have been joined
[2025-11-26 08:04:42] 2025-11-26 13:04:11,483 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:11,491 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:11,637 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:11,647 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:11,767 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:11,995 | INFO     | [job] validate thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,064 | INFO     | [job] control thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,321 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,337 | INFO     | [payload] control thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:04:42] 2025-11-26 13:04:12,432 | INFO     | [data] control thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,443 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,556 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:12,959 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:13,196 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:13,352 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:15,452 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:04:42] 2025-11-26 13:04:23,786 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:04:42] 2025-11-26 13:04:25,368 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908218824512)>', '<ExcThread(monitor, started 139907704002304)>']
[2025-11-26 08:04:42] 2025-11-26 13:04:30,394 | INFO     | all workflow threads have been joined
[2025-11-26 08:04:42] 2025-11-26 13:04:30,394 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:04:42] 2025-11-26 13:04:30,394 | INFO     | traces error code: 0
[2025-11-26 08:04:42] 2025-11-26 13:04:30,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:04:42] 2025-11-26 13:04:39,194 | INFO     | 57630s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 08:04:42] 2025-11-26 13:04:40,958 | INFO     | PID=3183321 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:04:42] 2025-11-26 13:04:40,959 | INFO     | .. there are 20 such processes running
[2025-11-26 08:04:42] 2025-11-26 13:04:40,959 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:04:42] 2025-11-26 13:04:40,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:04:42] 2025-11-26 13:04:40,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:04:42] 2025-11-26 13:04:40,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:04:42] 2025-11-26 13:04:40,960 | INFO     | [monitor] control thread has ended
[2025-11-26 08:04:42] 2025-11-26 13:04:41,281 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:04:42] 2025-11-26 13:04:41,308 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:04:42] 2025-11-26 13:04:41,343 [wrapper] pilotpid: 3183321
[2025-11-26 08:04:42] 2025-11-26 13:04:41,364 [wrapper] Pilot exit status: 0
[2025-11-26 08:04:42] 2025-11-26 13:04:41,438 [wrapper] pandaids: 6896243361
[2025-11-26 08:04:42] 2025-11-26 13:04:41,716 [wrapper] cleanup supervisor_pilot 1439734 3183322
[2025-11-26 08:04:42] 2025-11-26 13:04:41,732 [wrapper] Test setup, not cleaning
[2025-11-26 08:04:42] 2025-11-26 13:04:41,766 [wrapper] apfmon messages muted
[2025-11-26 08:04:42] 2025-11-26 13:04:41,816 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:04:42] 2025-11-26 13:04:41,846 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:04:42]  *** Error codes and diagnostics ***
[2025-11-26 08:04:42]     "exeErrorCode": 0,
[2025-11-26 08:04:42]     "exeErrorDiag": "",
[2025-11-26 08:04:42]     "pilotErrorCode": 0,
[2025-11-26 08:04:42]     "pilotErrorDiag": "",
[2025-11-26 08:04:42]  *** Listing of results directory ***
[2025-11-26 08:04:42] total 1333144
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 16:08 pilot3.tar.gz
[2025-11-26 08:04:42] -rwx------. 1 boincer umatlas     36292 Nov 24 16:46 runpilot2-wrapper.sh
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 16:46 queuedata.json
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas       100 Nov 25 16:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:04:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 16:03 run_atlas
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas       105 Nov 25 16:03 job.xml
[2025-11-26 08:04:42] -rw-r--r--. 2 boincer umatlas 410877864 Nov 25 16:03 EVNT.47483658._001418.pool.root.1
[2025-11-26 08:04:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 16:03 start_atlas.sh
[2025-11-26 08:04:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 16:03 shared
[2025-11-26 08:04:42] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 16:03 input.tar.gz
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas         0 Nov 25 16:03 boinc_lockfile
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 16:03 pandaJob.out
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas        57 Nov 25 16:03 setup.sh.local
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas    991893 Nov 25 16:03 agis_schedconf.cvmfs.json
[2025-11-26 08:04:42] drwx------. 5 boincer umatlas      4096 Nov 25 16:03 pilot3
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas       533 Nov 26 07:46 boinc_task_state.xml
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas 930906826 Nov 26 08:02 HITS.47556149._004050.pool.root.1
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas      1055 Nov 26 08:03 memory_monitor_summary.json
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:03 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas   2126182 Nov 26 08:03 log.47556149._004050.job.log.tgz.1
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 08:03 init_data.xml
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas      8619 Nov 26 08:04 heartbeat.json
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:04 wrapper_checkpoint.txt
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:04 boinc_mmap_file
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas       939 Nov 26 08:04 pilotlog.txt
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas        95 Nov 26 08:04 pilot_heartbeat.json
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas   7588224 Nov 26 08:04 log.47556149._004050.job.log.1
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas       353 Nov 26 08:04 output.list
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:04 runtime_log
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas   9738240 Nov 26 08:04 result.tar.gz
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas       661 Nov 26 08:04 T4iKDm3Yth8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAwLKDmWugSwm.diag
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 08:04 runtime_log.err
[2025-11-26 08:04:42] -rw-r--r--. 1 boincer umatlas     21510 Nov 26 08:04 stderr.txt
[2025-11-26 08:04:42] HITS file was successfully produced:
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas 930906826 Nov 26 08:02 shared/HITS.pool.root.1
[2025-11-26 08:04:42]  *** Contents of shared directory: ***
[2025-11-26 08:04:42] total 1320456
[2025-11-26 08:04:42] -rw-r--r--. 2 boincer umatlas 410877864 Nov 25 16:03 ATLAS.root_0
[2025-11-26 08:04:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 16:03 start_atlas.sh
[2025-11-26 08:04:42] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 16:03 input.tar.gz
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas 930906826 Nov 26 08:02 HITS.pool.root.1
[2025-11-26 08:04:42] -rw-------. 1 boincer umatlas   9738240 Nov 26 08:04 result.tar.gz
08:04:44 (3177793): run_atlas exited; CPU time 236691.152684
08:04:44 (3177793): called boinc_finish(0)

</stderr_txt>
]]>

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