Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:19 (1162211): wrapper (7.7.26015): starting
20:18:19 (1162211): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 20:18:19] Arguments: --nthreads 3
[2025-11-25 20:18:19] Threads: 3
[2025-11-25 20:18:19] Checking for CVMFS
[2025-11-25 20:18:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:18:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:18:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:18:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:18:20] 2.9.2.0 411005 437 67108 153295 0 80 35293236 36864000 0 130560 0 2234058 99.998 19886 13592 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 20:18:20] CVMFS is ok
[2025-11-25 20:18:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:18:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:18:20] Further information can be found at the LHC@home message board.
[2025-11-25 20:18:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:18:20] Checking for apptainer binary...
[2025-11-25 20:18:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:18:20] Running /usr/bin/apptainer --version
[2025-11-25 20:18:20] apptainer version 1.4.1-1.1
[2025-11-25 20:18:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:18:20] thA335
[2025-11-25 20:18:20] apptainer works
[2025-11-25 20:18:20] Set ATHENA_PROC_NUMBER=3
[2025-11-25 20:18:20] Set ATHENA_CORE_NUMBER=3
[2025-11-25 20:18:20] Starting ATLAS job with PandaID=6896243458
[2025-11-25 20:18:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:22:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:22:39] 2025-11-25 19:21:47,293 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | INFO     | sufficient remaining disk space (827545616384 B)
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | INFO     | update_server=False
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:22:39] 2025-11-25 19:21:47,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:22:39] 2025-11-25 19:21:47,308 | INFO     | aborting loop
[2025-11-25 20:22:39] 2025-11-25 19:21:47,474 | INFO     | all job control threads have been joined
[2025-11-25 20:22:39] 2025-11-25 19:21:47,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:22:39] 2025-11-25 19:21:48,309 | INFO     | all data control threads have been joined
[2025-11-25 20:22:39] 2025-11-25 19:21:48,310 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:48,313 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:48,314 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:48,480 | INFO     | [job] control thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:48,623 | INFO     | all payload control threads have been joined
[2025-11-25 20:22:39] 2025-11-25 19:21:48,757 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,150 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,233 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,315 | INFO     | [data] control thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,469 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,584 | INFO     | [job] validate thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,629 | INFO     | [payload] control thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,677 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,735 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,803 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:49,913 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:21:50,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:22:39] 2025-11-25 19:21:54,297 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:22:39] 2025-11-25 19:22:17,716 | INFO     | PID=1165953 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:22:39] 2025-11-25 19:22:17,716 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:22:39] 2025-11-25 19:22:17,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:22:39] 2025-11-25 19:22:17,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:22:39] 2025-11-25 19:22:32,791 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:22:39] 2025-11-25 19:22:34,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139872365635392)>', '<ExcThread(monitor, started 139871507179264)>']
[2025-11-25 20:22:39] 2025-11-25 19:22:34,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:22:39] 2025-11-25 19:22:34,802 | INFO     | [monitor] control thread has ended
[2025-11-25 20:22:39] 2025-11-25 19:22:39,078 | INFO     | all workflow threads have been joined
[2025-11-25 20:22:39] 2025-11-25 19:22:39,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:22:39] 2025-11-25 19:22:39,079 | INFO     | traces error code: 0
[2025-11-25 20:22:39] 2025-11-25 19:22:39,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:22:39] 2025-11-25 19:22:39,124 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:22:39] 2025-11-25 19:22:39,127 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:22:39] 2025-11-25 19:22:39,130 [wrapper] pilotpid: 1165953
[2025-11-25 20:22:39] 2025-11-25 19:22:39,133 [wrapper] Pilot exit status: 0
[2025-11-25 20:22:39] 2025-11-25 19:22:39,140 [wrapper] pandaids: 6896243458
[2025-11-25 20:22:39] 2025-11-25 19:22:39,158 [wrapper] cleanup supervisor_pilot 1165959 1165954
[2025-11-25 20:22:39] 2025-11-25 19:22:39,161 [wrapper] Test setup, not cleaning
[2025-11-25 20:22:39] 2025-11-25 19:22:39,164 [wrapper] apfmon messages muted
[2025-11-25 20:22:39] 2025-11-25 19:22:39,167 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:22:39] 2025-11-25 19:22:39,169 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:22:39]  *** Error codes and diagnostics ***
[2025-11-25 20:22:39]     "exeErrorCode": 65,
[2025-11-25 20:22:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:22:39]     "pilotErrorCode": 1305,
[2025-11-25 20:22:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 20:22:39]  *** Listing of results directory ***
[2025-11-25 20:22:39] total 406872
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc    576529 Nov 24 22:08 pilot3.tar.gz
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc      5112 Nov 24 22:51 queuedata.json
[2025-11-25 20:22:39] -rwx------ 1 boinc boinc     36292 Nov 24 22:52 runpilot2-wrapper.sh
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc       100 Nov 25 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:22:39] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 20:18 run_atlas
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc       105 Nov 25 20:18 job.xml
[2025-11-25 20:22:39] -rw-r--r-- 2 boinc boinc 412430865 Nov 25 20:18 EVNT.47483658._001423.pool.root.1
[2025-11-25 20:22:39] -rw-r--r-- 2 boinc boinc    590108 Nov 25 20:18 input.tar.gz
[2025-11-25 20:22:39] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:18 start_atlas.sh
[2025-11-25 20:22:39] drwxrwx--x 2 boinc boinc      4096 Nov 25 20:18 shared
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:18 boinc_setup_complete
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc      6196 Nov 25 20:18 init_data.xml
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc         0 Nov 25 20:18 boinc_lockfile
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc      2785 Nov 25 20:18 pandaJob.out
[2025-11-25 20:22:39] -rw------- 1 boinc boinc    991893 Nov 25 20:18 agis_schedconf.cvmfs.json
[2025-11-25 20:22:39] -rw------- 1 boinc boinc   1516240 Nov 25 20:18 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:22:39] drwx------ 5 boinc boinc      4096 Nov 25 20:18 pilot3
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc       523 Nov 25 20:19 boinc_task_state.xml
[2025-11-25 20:22:39] -rw------- 1 boinc boinc       956 Nov 25 20:19 memory_monitor_summary.json
[2025-11-25 20:22:39] -rw------- 1 boinc boinc     56005 Nov 25 20:19 log.47556149._004094.job.log.tgz.1
[2025-11-25 20:22:39] -rw------- 1 boinc boinc        95 Nov 25 20:21 pilot_heartbeat.json
[2025-11-25 20:22:39] -rw------- 1 boinc boinc      8404 Nov 25 20:21 heartbeat.json
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc      8192 Nov 25 20:22 boinc_mmap_file
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc        23 Nov 25 20:22 wrapper_checkpoint.txt
[2025-11-25 20:22:39] -rw------- 1 boinc boinc      4752 Nov 25 20:22 pilotlog.txt
[2025-11-25 20:22:39] -rw------- 1 boinc boinc     93474 Nov 25 20:22 log.47556149._004094.job.log.1
[2025-11-25 20:22:39] -rw------- 1 boinc boinc       186 Nov 25 20:22 output.list
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc       620 Nov 25 20:22 runtime_log
[2025-11-25 20:22:39] -rw------- 1 boinc boinc    174080 Nov 25 20:22 result.tar.gz
[2025-11-25 20:22:39] -rw------- 1 boinc boinc       649 Nov 25 20:22 xelLDmAfth8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSDJKDmGLOItm.diag
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc      8744 Nov 25 20:22 runtime_log.err
[2025-11-25 20:22:39] -rw-r--r-- 1 boinc boinc      8237 Nov 25 20:22 stderr.txt
[2025-11-25 20:22:39] No HITS result produced
[2025-11-25 20:22:39]  *** Contents of shared directory: ***
[2025-11-25 20:22:39] total 403540
[2025-11-25 20:22:39] -rw-r--r-- 2 boinc boinc 412430865 Nov 25 20:18 ATLAS.root_0
[2025-11-25 20:22:39] -rw-r--r-- 2 boinc boinc    590108 Nov 25 20:18 input.tar.gz
[2025-11-25 20:22:39] -rw-r--r-- 2 boinc boinc     15847 Nov 25 20:18 start_atlas.sh
[2025-11-25 20:22:39] -rw------- 1 boinc boinc    174080 Nov 25 20:22 result.tar.gz
20:22:40 (1162211): run_atlas exited; CPU time 32.117309
20:22:40 (1162211): called boinc_finish(0)

</stderr_txt>
]]>

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